Experiment set12H9 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.0 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0152 -6.6 -4.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_2578 -6.5 -4.5 O-succinylhomoserine sulfhydrylase compare
Psest_3721 -6.4 -4.4 Malic enzyme compare
Psest_3650 -6.3 -8.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -6.2 -6.0 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.1 -8.4 gamma-glutamyl phosphate reductase compare
Psest_3648 -6.1 -5.9 anthranilate phosphoribosyltransferase compare
Psest_0279 -6.0 -5.9 methionine biosynthesis protein MetW compare
Psest_0155 -6.0 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3866 -5.9 -13.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0153 -5.9 -9.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1037 -5.9 -4.0 acetolactate synthase, small subunit compare
Psest_3384 -5.8 -5.6 glutamate 5-kinase compare
Psest_2591 -5.7 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3298 -5.7 -8.7 histidinol dehydrogenase compare
Psest_3864 -5.6 -12.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3299 -5.6 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -5.4 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psest_2584 -5.4 -5.3 Phosphoribosylanthranilate isomerase compare
Psest_0062 -5.3 -11.3 tryptophan synthase, alpha subunit compare
Psest_1473 -5.2 -5.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3818 -5.1 -9.1 endoribonuclease L-PSP, putative compare
Psest_3943 -5.1 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0280 -5.1 -15.0 homoserine O-acetyltransferase compare
Psest_0063 -4.9 -11.0 tryptophan synthase, beta subunit compare
Psest_0313 -4.7 -4.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -4.7 -8.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1772 -4.7 -3.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0325 -4.6 -12.4 Putative threonine efflux protein compare
Psest_3303 -4.3 -5.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2589 -4.2 -11.5 3-isopropylmalate dehydrogenase compare
Psest_3306 -4.2 -4.1 conserved hypothetical integral membrane protein compare
Psest_2329 -4.0 -17.8 Transcriptional regulator compare
Psest_3649 -3.8 -10.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1686 -3.7 -5.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4081 -3.5 -8.5 Glutaminase (EC 3.5.1.2) (from data) conserved
Psest_3304 -3.4 -6.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1295 -3.4 -6.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3307 -3.3 -8.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3998 -3.2 -8.1 glutamate--cysteine ligase compare
Psest_2712 -3.2 -5.8 Surface lipoprotein compare
Psest_3305 -3.2 -9.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2088 -3.1 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_4097 -3.1 -13.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3297 -3.1 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2579 -3.0 -2.1 amidophosphoribosyltransferase compare
Psest_1765 -3.0 -8.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0445 -3.0 -14.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1012 -2.9 -4.8 Signal transduction histidine kinase compare
Psest_0697 -2.9 -3.9 ribosomal protein L9 compare
Psest_1656 -2.8 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4077 -2.8 -14.0 amino acid carrier protein compare
Psest_3129 -2.8 -2.3 tyrosine recombinase XerD compare
Psest_2651 -2.8 -4.6 DNA topoisomerase I, bacterial compare
Psest_0248 -2.7 -8.4 Transcriptional regulator compare
Psest_0466 -2.6 -4.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3322 -2.5 -17.8 TIGR02099 family protein compare
Psest_2232 -2.5 -12.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0999 -2.5 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0170 -2.5 -7.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_1657 -2.4 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0851 -2.3 -11.3 Transcriptional regulators compare
Psest_1277 -2.3 -12.8 2-isopropylmalate synthase, yeast type compare
Psest_1813 -2.3 -12.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2325 -2.2 -10.0 alpha-L-glutamate ligase-related protein compare
Psest_2327 -2.1 -8.6 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0498 -2.1 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_3168 -2.1 -2.4 Molybdopterin converting factor, large subunit compare
Psest_3226 -2.0 -1.6 Predicted membrane protein compare
Psest_0326 -2.0 -6.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1814 -2.0 -13.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2324 -2.0 -14.5 hypothetical protein compare
Psest_0993 -2.0 -9.2 Glucose-6-phosphate isomerase compare
Psest_2862 -2.0 -9.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2323 -1.9 -11.7 Uncharacterized protein conserved in archaea compare
Psest_2316 -1.9 -10.6 phosphoenolpyruvate synthase compare
Psest_4075 -1.9 -11.3 symporter for L-glutamate, L-glutamine, and L-proline (from data) conserved
Psest_1659 -1.9 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2714 -1.9 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_1724 -1.9 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3883 -1.8 -6.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0558 -1.8 -1.2 urease, beta subunit compare
Psest_0284 -1.8 -10.1 pyridoxal phosphate enzyme, YggS family compare
Psest_1474 -1.8 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_1704 -1.8 -1.2 Dehydrogenases (flavoproteins) compare
Psest_4082 -1.7 -3.9 hypothetical protein compare
Psest_1075 -1.7 -6.6 Predicted transcriptional regulators compare
Psest_1660 -1.7 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0327 -1.7 -3.8 Transcriptional regulator compare
Psest_1486 -1.7 -4.4 hypothetical protein compare
Psest_3180 -1.7 -9.0 Exonuclease I compare
Psest_3159 -1.6 -4.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3228 -1.6 -8.1 Zn-dependent protease with chaperone function compare
Psest_0718 -1.6 -4.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_0359 -1.6 -2.1 Transcriptional regulators compare
Psest_1013 -1.6 -2.1 phosphoribosylamine--glycine ligase compare
Psest_0411 -1.5 -9.1 biotin synthetase compare
Psest_0520 -1.5 -1.2 hypothetical protein compare
Psest_2946 -1.5 -3.0 septum site-determining protein MinD compare
Psest_4191 -1.5 -2.2 Transcriptional regulator compare
Psest_0417 -1.5 -2.2 Acyl-CoA dehydrogenases compare
Psest_1655 -1.4 -3.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0182 -1.4 -4.1 glycine cleavage system H protein compare
Psest_1944 -1.4 -10.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) compare
Psest_3960 -1.4 -1.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3810 -1.4 -1.0 orotate phosphoribosyltransferase compare
Psest_2872 -1.4 -1.6 protein RecA compare
Psest_1496 -1.4 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_2333 -1.4 -1.2 Protein of unknown function (DUF3359). compare
Psest_1661 -1.4 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0998 -1.4 -2.9 poly(A) polymerase compare
Psest_0191 -1.4 -0.9 PAS domain S-box compare
Psest_3301 -1.4 -3.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_3123 -1.4 -0.9 dihydroorotase, homodimeric type compare
Psest_2491 -1.3 -4.9 succinyl-CoA synthetase, beta subunit compare
Psest_0257 -1.3 -2.6 Predicted Zn-dependent peptidases compare
Psest_1149 -1.3 -2.9 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1879 -1.3 -2.7 Trk-type K+ transport systems, membrane components compare
Psest_1957 -1.3 -8.0 outer membrane porin, OprD family. compare
Psest_0442 -1.3 -1.5 ATPases of the AAA+ class compare
Psest_0722 -1.3 -5.5 Predicted ATPase compare
Psest_0457 -1.3 -3.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0489 -1.3 -1.2 phosphoserine phosphatase SerB compare
Psest_3338 -1.3 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4273 -1.2 -4.7 Lysophospholipase compare
Psest_3550 -1.2 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_4405 -1.2 -2.6 hypothetical protein compare
Psest_2090 -1.2 -2.5 Protein of unknown function (DUF2970). compare
Psest_4298 -1.2 -1.2 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0449 -1.2 -5.6 Glutamine synthetase adenylyltransferase compare
Psest_1000 -1.2 -6.4 PAS domain S-box compare
Psest_3988 -1.2 -4.2 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2312 -1.2 -5.8 Small-conductance mechanosensitive channel compare
Psest_1510 -1.2 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3691 -1.2 -4.0 Predicted membrane protein compare
Psest_0083 -1.2 -2.6 Uncharacterized conserved protein compare
Psest_2317 -1.2 -6.5 Uncharacterized protein conserved in bacteria compare
Psest_2067 -1.2 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2102 -1.2 -9.8 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_1489 -1.2 -3.5 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2490 -1.1 -7.2 succinyl-CoA synthetase, alpha subunit compare
Psest_2864 -1.1 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3806 -1.1 -6.4 Phosphomannomutase compare
Psest_1163 -1.1 -2.9 diguanylate cyclase (GGDEF) domain compare
Psest_1994 -1.1 -2.9 Amidases related to nicotinamidase compare
Psest_0297 -1.1 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0969 -1.1 -1.7 transcription elongation factor GreA compare
Psest_1472 -1.1 -4.6 Protein of unknown function (DUF3108). compare
Psest_0292 -1.1 -1.8 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2711 -1.0 -2.3 PilZ domain. compare
Psest_3768 -1.0 -3.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_4088 -1.0 -3.1 Transcriptional regulators compare
Psest_0193 -1.0 -0.7 conserved hypothetical protein compare
Psest_0281 -1.0 -5.8 Dynamin family. compare
Psest_1920 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0709 -1.0 -5.6 pseudouridine synthase, RluA family compare
Psest_3926 -1.0 -6.2 GTP-binding protein TypA/BipA compare
Psest_1054 -1.0 -4.6 Diaminopimelate decarboxylase compare
Psest_1516 -1.0 -2.2 Uncharacterized lipoprotein compare
Psest_2901 -1.0 -1.8 hypothetical protein compare
Psest_2628 -1.0 -3.5 Flp pilus assembly protein, protease CpaA compare
Psest_3177 -1.0 -1.3 hypothetical protein compare
Psest_2940 -1.0 -2.0 Predicted membrane protein compare
Psest_4363 -0.9 -4.5 ATPases involved in chromosome partitioning compare
Psest_3766 -0.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0655 -0.9 -2.0 Chemotaxis signal transduction protein compare
Psest_2278 -0.9 -1.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0482 -0.9 -3.5 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_4170 -0.9 -1.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3014 -0.9 -1.7 cob(I)alamin adenosyltransferase compare
Psest_1918 -0.9 -4.3 Calcineurin-like phosphoesterase. compare
Psest_3042 -0.9 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1747 -0.9 -5.2 ATPases involved in chromosome partitioning compare
Psest_0028 -0.9 -2.8 Coproporphyrinogen III oxidase compare
Psest_3537 -0.9 -3.4 hypothetical protein compare
Psest_3872 -0.9 -4.5 FAD/FMN-containing dehydrogenases compare
Psest_1204 -0.9 -1.9 Transcriptional regulators compare
Psest_2810 -0.9 -3.8 5'/3'-nucleotidase SurE compare
Psest_1601 -0.8 -1.9 Signal transduction histidine kinase compare
Psest_1716 -0.8 -2.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0208 -0.8 -4.8 Uncharacterized protein conserved in bacteria compare
Psest_1951 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3419 -0.8 -3.7 Predicted transcriptional regulators compare
Psest_1001 -0.8 -1.6 hypothetical protein compare
Psest_2027 -0.8 -5.4 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1974 -0.8 -2.0 integration host factor, alpha subunit compare
Psest_3573 -0.8 -2.8 dTDP-4-dehydrorhamnose reductase compare
Psest_2863 -0.8 -3.1 Transcriptional regulator compare
Psest_0309 -0.8 -0.9 RND family efflux transporter, MFP subunit compare
Psest_1388 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1103 -0.8 -2.2 GTP-binding protein YchF compare
Psest_2277 -0.8 -1.3 coenzyme PQQ biosynthesis protein A compare
Psest_3878 -0.8 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1506 -0.8 -2.9 queuosine biosynthesis protein QueC compare
Psest_1952 -0.8 -2.6 hypothetical protein compare
Psest_1700 -0.8 -3.4 Transcriptional regulator compare
Psest_0789 -0.8 -3.1 hypothetical protein compare
Psest_1306 -0.8 -1.0 hypothetical protein compare
Psest_4124 -0.8 -1.7 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Glutamine in Pseudomonas stutzeri RCH2

For carbon source L-Glutamine across organisms