Experiment set12H8 for Pseudomonas stutzeri RCH2

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -7.4 -5.1 methionine biosynthesis protein MetW compare
Psest_0152 -7.1 -6.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3944 -7.0 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0508 -6.9 -9.5 gamma-glutamyl phosphate reductase compare
Psest_3384 -6.3 -9.7 glutamate 5-kinase compare
Psest_3648 -6.3 -8.7 anthranilate phosphoribosyltransferase compare
Psest_3650 -6.3 -15.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3866 -6.2 -19.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0155 -6.1 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2584 -6.1 -7.2 Phosphoribosylanthranilate isomerase compare
Psest_2578 -6.1 -14.6 O-succinylhomoserine sulfhydrylase compare
Psest_2590 -6.0 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psest_0062 -5.9 -15.4 tryptophan synthase, alpha subunit compare
Psest_2591 -5.9 -5.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0153 -5.8 -16.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0280 -5.8 -17.1 homoserine O-acetyltransferase compare
Psest_3299 -5.8 -16.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3298 -5.7 -14.8 histidinol dehydrogenase compare
Psest_3647 -5.7 -9.5 Indole-3-glycerol phosphate synthase compare
Psest_3864 -5.6 -19.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0313 -5.5 -6.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4078 -5.3 -3.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0063 -5.3 -14.4 tryptophan synthase, beta subunit compare
Psest_0325 -5.2 -15.6 Putative threonine efflux protein compare
Psest_2088 -4.6 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_0687 -4.6 -12.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3943 -4.6 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1473 -4.5 -9.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3998 -4.4 -10.1 glutamate--cysteine ligase compare
Psest_2589 -4.2 -11.5 3-isopropylmalate dehydrogenase compare
Psest_3226 -4.2 -2.2 Predicted membrane protein compare
Psest_1772 -3.8 -7.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.7 -3.6 amidophosphoribosyltransferase compare
Psest_0326 -3.5 -10.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3649 -3.5 -12.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3721 -3.2 -7.6 Malic enzyme compare
Psest_2329 -3.2 -19.4 Transcriptional regulator compare
Psest_2333 -3.1 -2.0 Protein of unknown function (DUF3359). compare
Psest_2532 -3.0 -5.7 Uncharacterized protein conserved in bacteria compare
Psest_0999 -2.8 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3818 -2.7 -8.5 endoribonuclease L-PSP, putative compare
Psest_3297 -2.7 -13.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4077 -2.6 -14.8 amino acid carrier protein compare
Psest_0327 -2.6 -4.2 Transcriptional regulator compare
Psest_1037 -2.5 -4.3 acetolactate synthase, small subunit compare
Psest_1013 -2.5 -3.3 phosphoribosylamine--glycine ligase compare
Psest_1474 -2.5 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_1686 -2.3 -3.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0489 -2.2 -2.1 phosphoserine phosphatase SerB compare
Psest_1655 -2.2 -6.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3159 -2.2 -7.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4044 -2.1 -2.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2104 -2.1 -2.4 IscR-regulated protein YhgI compare
Psest_3810 -2.1 -1.4 orotate phosphoribosyltransferase compare
Psest_0442 -2.0 -2.3 ATPases of the AAA+ class compare
Psest_2090 -2.0 -3.9 Protein of unknown function (DUF2970). compare
Psest_1704 -2.0 -1.8 Dehydrogenases (flavoproteins) compare
Psest_0498 -1.9 -2.0 ribosome small subunit-dependent GTPase A compare
Psest_0718 -1.9 -6.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_1656 -1.8 -3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2001 -1.8 -2.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0284 -1.8 -12.8 pyridoxal phosphate enzyme, YggS family compare
Psest_1659 -1.8 -3.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1660 -1.8 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1496 -1.7 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_1012 -1.7 -5.7 Signal transduction histidine kinase compare
Psest_1509 -1.7 -10.0 quinolinate synthetase complex, A subunit compare
Psest_4076 -1.7 -8.1 hypothetical protein compare
Psest_0028 -1.6 -5.6 Coproporphyrinogen III oxidase compare
Psest_3301 -1.6 -3.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_1657 -1.6 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4191 -1.5 -4.1 Transcriptional regulator compare
Psest_1661 -1.5 -2.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1679 -1.5 -2.1 ribonuclease, Rne/Rng family compare
Psest_2324 -1.5 -12.1 hypothetical protein compare
Psest_0411 -1.4 -9.4 biotin synthetase compare
Psest_3988 -1.4 -8.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2325 -1.4 -9.0 alpha-L-glutamate ligase-related protein compare
Psest_1277 -1.3 -9.1 2-isopropylmalate synthase, yeast type compare
Psest_3400 -1.3 -2.2 Copper resistance protein D. compare
Psest_3843 -1.3 -5.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0466 -1.3 -3.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1947 -1.3 -0.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0212 -1.2 -2.7 exodeoxyribonuclease V, gamma subunit compare
Psest_0722 -1.2 -6.8 Predicted ATPase compare
Psest_1242 -1.2 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1814 -1.2 -9.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2527 -1.2 -5.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3322 -1.1 -9.5 TIGR02099 family protein compare
Psest_1000 -1.1 -6.8 PAS domain S-box compare
Psest_3478 -1.1 -2.3 Cytochrome B561 compare
Psest_1144 -1.1 -1.6 AmpG-related permease compare
Psest_4219 -1.1 -2.3 DNA polymerase I compare
Psest_3351 -1.1 -4.7 peptide chain release factor 3 compare
Psest_0412 -1.0 -6.4 8-amino-7-oxononanoate synthase compare
Psest_1292 -1.0 -6.0 monothiol glutaredoxin, Grx4 family compare
Psest_2950 -1.0 -5.0 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_2323 -1.0 -7.0 Uncharacterized protein conserved in archaea compare
Psest_2719 -1.0 -1.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3146 -1.0 -1.4 hypothetical protein compare
Psest_1306 -1.0 -1.6 hypothetical protein compare
Psest_3377 -1.0 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1994 -0.9 -2.4 Amidases related to nicotinamidase compare
Psest_2862 -0.9 -6.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0306 -0.9 -7.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0415 -0.9 -3.7 dethiobiotin synthase compare
Psest_2855 -0.9 -1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1249 -0.9 -4.7 serine O-acetyltransferase compare
Psest_0277 -0.9 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2454 -0.9 -2.9 Rhodanese-related sulfurtransferase compare
Psest_3112 -0.9 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2911 -0.9 -1.8 Protein of unknown function (DUF2945). compare
Psest_0170 -0.9 -4.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_3767 -0.9 -3.0 tyrosine recombinase XerC compare
Psest_3792 -0.9 -2.4 Putative translation initiation inhibitor, yjgF family compare
Psest_4098 -0.8 -2.6 Superfamily I DNA and RNA helicases compare
Psest_1954 -0.8 -3.9 hypothetical protein compare
Psest_0831 -0.8 -1.3 hypothetical protein compare
Psest_0970 -0.8 -2.6 hypothetical protein compare
Psest_3296 -0.8 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2809 -0.8 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1804 -0.8 -1.4 Superfamily II DNA and RNA helicases compare
Psest_2651 -0.8 -3.3 DNA topoisomerase I, bacterial compare
Psest_2023 -0.8 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0959 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1813 -0.8 -5.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2037 -0.8 -3.6 uroporphyrin-III C-methyltransferase compare
Psest_3962 -0.8 -1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2810 -0.8 -3.5 5'/3'-nucleotidase SurE compare
Psest_3123 -0.8 -1.7 dihydroorotase, homodimeric type compare
Psest_0697 -0.8 -2.2 ribosomal protein L9 compare
Psest_2766 -0.7 -1.1 hypothetical protein compare
Psest_0413 -0.7 -3.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2531 -0.7 -5.2 cytochrome c oxidase accessory protein FixG compare
Psest_2650 -0.7 -2.4 hypothetical protein compare
Psest_2981 -0.7 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_0355 -0.7 -1.0 Glycine cleavage system regulatory protein compare
Psest_0740 -0.7 -1.8 Transcriptional regulator compare
Psest_3927 -0.7 -2.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1518 -0.7 -2.4 tRNA_Ser_CGA compare
Psest_2637 -0.7 -1.5 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2945 -0.7 -0.9 septum site-determining protein MinC compare
Psest_2628 -0.7 -2.3 Flp pilus assembly protein, protease CpaA compare
Psest_2525 -0.7 -2.9 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_3113 -0.7 -1.4 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0297 -0.7 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2626 -0.7 -1.5 Flp pilus assembly protein CpaB compare
Psest_1724 -0.7 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3995 -0.7 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1022 -0.7 -4.6 Thiol:disulfide interchange protein compare
Psest_0958 -0.7 -3.2 Oligoketide cyclase/lipid transport protein compare
Psest_0193 -0.7 -0.7 conserved hypothetical protein compare
Psest_4363 -0.7 -3.5 ATPases involved in chromosome partitioning compare
Psest_3228 -0.7 -4.3 Zn-dependent protease with chaperone function compare
Psest_4003 -0.6 -3.4 TIGR00153 family protein compare
Psest_4134 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3519 -0.6 -2.2 Uncharacterized conserved protein compare
Psest_0485 -0.6 -2.4 clan AA aspartic protease, TIGR02281 family compare
Psest_3790 -0.6 -3.9 Cytochrome c5 compare
Psest_2530 -0.6 -2.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3702 -0.6 -2.9 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_2872 -0.6 -1.0 protein RecA compare
Psest_1904 -0.6 -1.8 Arabinose efflux permease compare
Psest_3050 -0.6 -2.1 tRNA_Gly_CCC compare
Psest_1884 -0.6 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1582 -0.6 -2.4 Protein of unknown function (DUF3087). compare
Psest_3084 -0.6 -2.0 methyltransferase, putative compare
Psest_4158 -0.6 -2.0 Flagellar motor protein compare
Psest_1879 -0.6 -1.7 Trk-type K+ transport systems, membrane components compare
Psest_1457 -0.6 -1.0 FOG: Ankyrin repeat compare
Psest_1700 -0.6 -2.4 Transcriptional regulator compare
Psest_0730 -0.6 -2.7 O-6-methylguanine DNA methyltransferase compare
Psest_2956 -0.6 -2.3 Uncharacterized conserved protein compare
Psest_1397 -0.6 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2748 -0.6 -1.6 Transcriptional regulator compare
Psest_1595 -0.6 -1.1 Copper chaperone compare
Psest_1498 -0.5 -1.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1826 -0.5 -2.4 hypothetical protein compare
Psest_1695 -0.5 -2.1 Tfp pilus assembly protein PilZ compare
Psest_3965 -0.5 -2.4 hypothetical protein compare
Psest_3042 -0.5 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_3117 -0.5 -1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1986 -0.5 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0401 -0.5 -0.7 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0148 -0.5 -1.3 nitrate transport ATP-binding subunits C and D compare
Psest_4149 -0.5 -2.2 fagellar hook-basal body proteins compare
Psest_2327 -0.5 -2.9 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3865 -0.5 -2.1 Predicted integral membrane protein (DUF2269). compare
Psest_2863 -0.5 -3.0 Transcriptional regulator compare
Psest_3860 -0.5 -1.2 Predicted permeases compare
Psest_2500 -0.5 -1.5 hypothetical protein compare
Psest_1604 -0.5 -2.0 Thiol-disulfide isomerase and thioredoxins compare
Psest_2092 -0.5 -2.0 hypothetical protein compare
Psest_2778 -0.5 -1.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3323 -0.5 -2.2 ribonuclease, Rne/Rng family compare
Psest_3645 -0.5 -3.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0511 -0.5 -1.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_4338 -0.5 -2.4 Fe2+-dicitrate sensor, membrane component compare
Psest_1717 -0.5 -1.9 benzoate transporter compare
Psest_0296 -0.5 -3.4 glutathione synthetase, prokaryotic compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Pseudomonas stutzeri RCH2

For carbon source L-Asparagine across organisms