Experiment set12H7 for Pseudomonas stutzeri RCH2

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3647 -7.3 -5.1 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.9 -9.5 gamma-glutamyl phosphate reductase compare
Psest_3944 -6.8 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0062 -6.7 -11.2 tryptophan synthase, alpha subunit compare
Psest_2578 -6.7 -11.1 O-succinylhomoserine sulfhydrylase compare
Psest_2591 -6.4 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_3866 -6.3 -18.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0155 -6.3 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3650 -6.3 -15.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0153 -6.0 -13.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -5.9 -9.0 anthranilate phosphoribosyltransferase compare
Psest_2584 -5.9 -7.0 Phosphoribosylanthranilate isomerase compare
Psest_0280 -5.8 -17.5 homoserine O-acetyltransferase compare
Psest_3298 -5.8 -12.3 histidinol dehydrogenase compare
Psest_0279 -5.6 -8.5 methionine biosynthesis protein MetW compare
Psest_3384 -5.6 -10.7 glutamate 5-kinase compare
Psest_3864 -5.5 -17.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3299 -5.4 -16.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2088 -5.2 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_0063 -5.2 -11.9 tryptophan synthase, beta subunit compare
Psest_4078 -5.2 -3.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1473 -5.2 -7.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0325 -5.1 -15.3 Putative threonine efflux protein compare
Psest_0152 -4.8 -8.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_0313 -4.6 -9.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2589 -4.5 -11.8 3-isopropylmalate dehydrogenase compare
Psest_0687 -4.4 -9.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3943 -4.4 -6.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3998 -4.3 -9.2 glutamate--cysteine ligase compare
Psest_2590 -4.3 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psest_1686 -4.1 -6.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3649 -4.1 -12.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3226 -4.0 -2.1 Predicted membrane protein compare
Psest_1037 -3.9 -5.7 acetolactate synthase, small subunit compare
Psest_0326 -3.9 -11.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2333 -3.7 -1.9 Protein of unknown function (DUF3359). compare
Psest_3721 -3.6 -12.2 Malic enzyme compare
Psest_1772 -3.5 -6.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.4 -4.6 amidophosphoribosyltransferase compare
Psest_3129 -3.3 -2.8 tyrosine recombinase XerD compare
Psest_2329 -3.2 -17.5 Transcriptional regulator compare
Psest_0999 -3.1 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0498 -2.9 -3.0 ribosome small subunit-dependent GTPase A compare
Psest_1655 -2.9 -5.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3297 -2.8 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3818 -2.7 -9.5 endoribonuclease L-PSP, putative compare
Psest_4077 -2.7 -15.7 amino acid carrier protein compare
Psest_3301 -2.6 -6.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_0327 -2.5 -4.7 Transcriptional regulator compare
Psest_0725 -2.4 -3.0 Negative regulator of beta-lactamase expression compare
Psest_1656 -2.4 -3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2090 -2.4 -5.5 Protein of unknown function (DUF2970). compare
Psest_1660 -2.3 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1474 -2.3 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_0718 -2.3 -6.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_1012 -2.2 -5.6 Signal transduction histidine kinase compare
Psest_3159 -2.0 -6.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3810 -2.0 -1.4 orotate phosphoribosyltransferase compare
Psest_1013 -2.0 -3.0 phosphoribosylamine--glycine ligase compare
Psest_0489 -1.9 -1.8 phosphoserine phosphatase SerB compare
Psest_1704 -1.9 -1.7 Dehydrogenases (flavoproteins) compare
Psest_1661 -1.7 -2.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0284 -1.7 -12.1 pyridoxal phosphate enzyme, YggS family compare
Psest_2104 -1.7 -2.2 IscR-regulated protein YhgI compare
Psest_0722 -1.7 -7.7 Predicted ATPase compare
Psest_4044 -1.6 -2.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3860 -1.6 -3.9 Predicted permeases compare
Psest_3843 -1.6 -8.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1659 -1.6 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0442 -1.5 -2.7 ATPases of the AAA+ class compare
Psest_2946 -1.5 -3.4 septum site-determining protein MinD compare
Psest_2325 -1.5 -10.0 alpha-L-glutamate ligase-related protein compare
Psest_2527 -1.5 -6.4 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4076 -1.5 -7.3 hypothetical protein compare
Psest_1277 -1.5 -8.5 2-isopropylmalate synthase, yeast type compare
Psest_1679 -1.5 -2.9 ribonuclease, Rne/Rng family compare
Psest_2532 -1.5 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1509 -1.4 -5.4 quinolinate synthetase complex, A subunit compare
Psest_2324 -1.4 -11.0 hypothetical protein compare
Psest_2530 -1.3 -4.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3322 -1.3 -11.2 TIGR02099 family protein compare
Psest_0411 -1.3 -7.8 biotin synthetase compare
Psest_1657 -1.3 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1947 -1.3 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3850 -1.3 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2323 -1.2 -8.3 Uncharacterized protein conserved in archaea compare
Psest_1144 -1.2 -1.2 AmpG-related permease compare
Psest_2719 -1.2 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1292 -1.2 -6.2 monothiol glutaredoxin, Grx4 family compare
Psest_2001 -1.2 -1.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3988 -1.2 -6.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_4191 -1.2 -2.5 Transcriptional regulator compare
Psest_0292 -1.2 -2.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3910 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1814 -1.1 -8.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0845 -1.1 -1.4 hypothetical protein compare
Psest_2651 -1.1 -3.3 DNA topoisomerase I, bacterial compare
Psest_0959 -1.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2646 -1.1 -2.2 SOS regulatory protein LexA compare
Psest_3146 -1.1 -1.3 hypothetical protein compare
Psest_1884 -1.1 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2955 -1.1 -2.0 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_2018 -1.1 -2.4 Uncharacterized conserved protein compare
Psest_2718 -1.1 -1.6 hypothetical protein compare
Psest_0306 -1.0 -7.7 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0413 -1.0 -4.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3114 -1.0 -5.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2285 -1.0 -2.8 ATP-dependent protease La compare
Psest_0028 -1.0 -2.7 Coproporphyrinogen III oxidase compare
Psest_1001 -1.0 -2.4 hypothetical protein compare
Psest_1000 -1.0 -5.7 PAS domain S-box compare
Psest_3962 -0.9 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2277 -0.9 -2.3 coenzyme PQQ biosynthesis protein A compare
Psest_0061 -0.9 -2.4 hypothetical protein compare
Psest_2862 -0.9 -6.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0259 -0.9 -1.6 cell division ATP-binding protein FtsE compare
Psest_3296 -0.9 -1.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1804 -0.9 -1.5 Superfamily II DNA and RNA helicases compare
Psest_4003 -0.9 -3.5 TIGR00153 family protein compare
Psest_2037 -0.9 -5.0 uroporphyrin-III C-methyltransferase compare
Psest_2950 -0.9 -3.5 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_3123 -0.9 -1.7 dihydroorotase, homodimeric type compare
Psest_2531 -0.9 -5.9 cytochrome c oxidase accessory protein FixG compare
Psest_0417 -0.8 -1.9 Acyl-CoA dehydrogenases compare
Psest_0060 -0.8 -1.9 Predicted Fe-S protein compare
Psest_3927 -0.8 -3.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1813 -0.8 -5.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3395 -0.8 -1.4 hypothetical protein compare
Psest_0575 -0.8 -1.1 HrpA-like helicases compare
Psest_3351 -0.8 -3.5 peptide chain release factor 3 compare
Psest_4043 -0.8 -0.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3536 -0.8 -1.6 hypothetical protein compare
Psest_1677 -0.8 -2.7 Protein-tyrosine-phosphatase compare
Psest_3228 -0.8 -4.7 Zn-dependent protease with chaperone function compare
Psest_1056 -0.8 -1.2 2-isopropylmalate synthase, bacterial type compare
Psest_3766 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1111 -0.8 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0697 -0.8 -2.0 ribosomal protein L9 compare
Psest_2585 -0.8 -0.7 pseudouridylate synthase I compare
Psest_2327 -0.7 -4.3 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0412 -0.7 -5.2 8-amino-7-oxononanoate synthase compare
Psest_2944 -0.7 -1.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0401 -0.7 -1.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0958 -0.7 -3.5 Oligoketide cyclase/lipid transport protein compare
Psest_4273 -0.7 -3.8 Lysophospholipase compare
Psest_1824 -0.7 -1.9 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0655 -0.7 -1.4 Chemotaxis signal transduction protein compare
Psest_0440 -0.7 -2.4 hypothetical protein compare
Psest_0415 -0.7 -2.4 dethiobiotin synthase compare
Psest_4371 -0.7 -2.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2714 -0.7 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_2218 -0.7 -1.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1177 -0.7 -3.5 pyruvate kinase compare
Psest_4363 -0.7 -3.7 ATPases involved in chromosome partitioning compare
Psest_1073 -0.6 -2.2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_1475 -0.6 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0445 -0.6 -4.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0141 -0.6 -2.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2566 -0.6 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0013 -0.6 -3.4 Lauroyl/myristoyl acyltransferase compare
Psest_2766 -0.6 -0.9 hypothetical protein compare
Psest_1249 -0.6 -3.4 serine O-acetyltransferase compare
Psest_1445 -0.6 -3.1 Curli assembly protein CsgE. compare
Psest_2102 -0.6 -5.5 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_3115 -0.6 -3.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3419 -0.6 -2.9 Predicted transcriptional regulators compare
Psest_2304 -0.6 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3042 -0.6 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_3092 -0.6 -1.1 ribonuclease III, bacterial compare
Psest_1724 -0.6 -2.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2975 -0.6 -1.6 tRNA_Arg_CCT compare
Psest_0950 -0.6 -1.5 hypothetical protein compare
Psest_1486 -0.6 -2.1 hypothetical protein compare
Psest_0182 -0.6 -2.8 glycine cleavage system H protein compare
Psest_4393 -0.6 -2.9 Capsule polysaccharide export protein compare
Psest_1496 -0.6 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0789 -0.6 -2.5 hypothetical protein compare
Psest_1562 -0.6 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3323 -0.6 -2.2 ribonuclease, Rne/Rng family compare
Psest_4310 -0.6 -0.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1954 -0.6 -2.3 hypothetical protein compare
Psest_1176 -0.6 -1.8 Urea transporter compare
Psest_2863 -0.6 -2.5 Transcriptional regulator compare
Psest_1601 -0.6 -1.2 Signal transduction histidine kinase compare
Psest_2322 -0.6 -2.5 Transcriptional regulators compare
Psest_3400 -0.5 -0.9 Copper resistance protein D. compare
Psest_1238 -0.5 -2.8 Predicted membrane protein/domain compare
Psest_2525 -0.5 -1.6 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0414 -0.5 -2.5 biotin biosynthesis protein BioC compare
Psest_0054 -0.5 -2.2 hypothetical protein compare
Psest_1489 -0.5 -1.6 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3790 -0.5 -3.4 Cytochrome c5 compare
Psest_1459 -0.5 -2.4 hypothetical protein compare
Psest_3645 -0.5 -3.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1125 -0.5 -2.3 Protein of unknown function (DUF3509). compare
Psest_4158 -0.5 -2.1 Flagellar motor protein compare
Psest_2724 -0.5 -1.1 hypothetical protein compare
Psest_0193 -0.5 -0.9 conserved hypothetical protein compare
Psest_4106 -0.5 -2.7 formate dehydrogenase, gamma subunit compare
Psest_0133 -0.5 -1.0 type VI secretion protein, VC_A0107 family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Pseudomonas stutzeri RCH2

For carbon source L-Asparagine across organisms