Experiment set12H5 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -7.1 -4.9 methionine biosynthesis protein MetW compare
Psest_0508 -7.0 -8.3 gamma-glutamyl phosphate reductase compare
Psest_2578 -6.9 -9.4 O-succinylhomoserine sulfhydrylase compare
Psest_3647 -6.9 -6.7 Indole-3-glycerol phosphate synthase compare
Psest_3650 -6.8 -13.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3944 -6.7 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2584 -6.6 -4.6 Phosphoribosylanthranilate isomerase compare
Psest_3866 -6.5 -15.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0152 -6.5 -6.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_2591 -6.4 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -6.4 -7.6 anthranilate phosphoribosyltransferase compare
Psest_0062 -6.3 -11.4 tryptophan synthase, alpha subunit compare
Psest_3721 -6.2 -8.6 Malic enzyme compare
Psest_1473 -6.2 -4.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3298 -6.0 -11.6 histidinol dehydrogenase compare
Psest_3384 -6.0 -9.2 glutamate 5-kinase compare
Psest_0153 -5.9 -13.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -5.9 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_0280 -5.9 -16.2 homoserine O-acetyltransferase compare
Psest_0155 -5.8 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0063 -5.8 -12.4 tryptophan synthase, beta subunit compare
Psest_3299 -5.7 -15.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3864 -5.6 -17.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3226 -5.6 -2.0 Predicted membrane protein compare
Psest_0687 -5.2 -10.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0325 -5.2 -15.2 Putative threonine efflux protein compare
Psest_0313 -5.1 -7.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3818 -4.9 -11.8 endoribonuclease L-PSP, putative compare
Psest_4077 -4.9 -19.0 amino acid carrier protein compare
Psest_2589 -4.7 -12.9 3-isopropylmalate dehydrogenase compare
Psest_3649 -4.6 -13.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3943 -4.5 -6.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2329 -4.1 -18.6 Transcriptional regulator compare
Psest_1772 -4.0 -7.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3998 -4.0 -9.4 glutamate--cysteine ligase compare
Psest_2862 -4.0 -13.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2088 -3.9 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1295 -3.8 -8.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -3.8 -3.7 acetolactate synthase, small subunit compare
Psest_2333 -3.8 -1.9 Protein of unknown function (DUF3359). compare
Psest_2579 -3.7 -2.5 amidophosphoribosyltransferase compare
Psest_1686 -3.6 -6.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0326 -3.5 -10.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2651 -3.5 -6.2 DNA topoisomerase I, bacterial compare
Psest_0327 -3.3 -6.0 Transcriptional regulator compare
Psest_3297 -3.3 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0999 -3.0 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3304 -2.9 -7.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0445 -2.9 -16.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1724 -2.6 -6.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1013 -2.6 -1.8 phosphoribosylamine--glycine ligase compare
Psest_3303 -2.6 -7.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3910 -2.5 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1695 -2.5 -5.3 Tfp pilus assembly protein PilZ compare
Psest_1496 -2.5 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3307 -2.5 -8.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3306 -2.5 -4.9 conserved hypothetical integral membrane protein compare
Psest_3129 -2.4 -2.7 tyrosine recombinase XerD compare
Psest_1012 -2.4 -5.7 Signal transduction histidine kinase compare
Psest_0411 -2.3 -11.0 biotin synthetase compare
Psest_1474 -2.3 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_1765 -2.3 -10.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2712 -2.3 -6.3 Surface lipoprotein compare
Psest_4075 -2.3 -11.7 symporter for L-glutamate, L-glutamine, and L-proline (from data) conserved
Psest_3305 -2.3 -9.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0489 -2.2 -1.5 phosphoserine phosphatase SerB compare
Psest_3691 -2.1 -4.9 Predicted membrane protein compare
Psest_1277 -2.1 -11.8 2-isopropylmalate synthase, yeast type compare
Psest_0466 -2.1 -5.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4191 -2.1 -4.3 Transcriptional regulator compare
Psest_2325 -2.1 -12.6 alpha-L-glutamate ligase-related protein compare
Psest_3720 -2.1 -15.2 penicillin-binding protein, 1A family compare
Psest_4085 -2.0 -14.0 Biotin carboxylase compare
Psest_3159 -2.0 -6.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3301 -2.0 -5.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_4298 -2.0 -1.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4084 -2.0 -13.3 oxaloacetate decarboxylase alpha subunit compare
Psest_2324 -2.0 -15.1 hypothetical protein compare
Psest_1813 -1.9 -11.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0718 -1.9 -5.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_0851 -1.9 -12.7 Transcriptional regulators compare
Psest_3810 -1.9 -1.3 orotate phosphoribosyltransferase compare
Psest_2863 -1.9 -5.2 Transcriptional regulator compare
Psest_1704 -1.9 -1.7 Dehydrogenases (flavoproteins) compare
Psest_0248 -1.9 -10.5 Transcriptional regulator compare
Psest_3322 -1.8 -14.7 TIGR02099 family protein compare
Psest_0359 -1.8 -3.9 Transcriptional regulators compare
Psest_0722 -1.8 -7.9 Predicted ATPase compare
Psest_0412 -1.8 -10.0 8-amino-7-oxononanoate synthase compare
Psest_1163 -1.7 -5.9 diguanylate cyclase (GGDEF) domain compare
Psest_0170 -1.7 -5.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_0442 -1.7 -2.3 ATPases of the AAA+ class compare
Psest_0297 -1.7 -3.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2323 -1.6 -10.2 Uncharacterized protein conserved in archaea compare
Psest_3809 -1.6 -5.8 hypothetical protein compare
Psest_3031 -1.6 -1.2 hypothetical protein compare
Psest_3806 -1.6 -8.3 Phosphomannomutase compare
Psest_4086 -1.6 -8.9 Transcriptional regulator compare
Psest_2327 -1.5 -7.7 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_2090 -1.5 -3.0 Protein of unknown function (DUF2970). compare
Psest_0306 -1.5 -11.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2646 -1.5 -1.7 SOS regulatory protein LexA compare
Psest_1920 -1.4 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_4044 -1.4 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0415 -1.4 -5.2 dethiobiotin synthase compare
Psest_4098 -1.4 -3.1 Superfamily I DNA and RNA helicases compare
Psest_0207 -1.3 -3.3 hypothetical protein compare
Psest_4097 -1.3 -8.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0485 -1.3 -4.2 clan AA aspartic protease, TIGR02281 family compare
Psest_1879 -1.3 -3.1 Trk-type K+ transport systems, membrane components compare
Psest_1000 -1.3 -7.1 PAS domain S-box compare
Psest_0533 -1.3 -5.6 Sel1 repeat. compare
Psest_0771 -1.3 -8.5 Acyl-CoA hydrolase compare
Psest_1986 -1.3 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0498 -1.3 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_3288 -1.3 -8.7 type IV-A pilus assembly ATPase PilB compare
Psest_4297 -1.3 -7.6 PAS domain S-box compare
Psest_3988 -1.2 -7.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0257 -1.2 -3.0 Predicted Zn-dependent peptidases compare
Psest_2316 -1.2 -8.4 phosphoenolpyruvate synthase compare
Psest_3766 -1.2 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_1075 -1.2 -5.6 Predicted transcriptional regulators compare
Psest_1947 -1.2 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0491 -1.2 -8.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0193 -1.2 -1.0 conserved hypothetical protein compare
Psest_0309 -1.2 -1.6 RND family efflux transporter, MFP subunit compare
Psest_2718 -1.2 -1.6 hypothetical protein compare
Psest_0198 -1.2 -7.0 TRAP transporter solute receptor, TAXI family compare
Psest_3180 -1.1 -7.1 Exonuclease I compare
Psest_0417 -1.1 -2.3 Acyl-CoA dehydrogenases compare
Psest_0414 -1.1 -3.6 biotin biosynthesis protein BioC compare
Psest_1505 -1.1 -1.8 Organic radical activating enzymes compare
Psest_1994 -1.1 -3.5 Amidases related to nicotinamidase compare
Psest_3039 -1.1 -1.9 periplasmic nitrate reductase, NapE protein compare
Psest_1944 -1.1 -9.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) compare
Psest_3323 -1.1 -3.3 ribonuclease, Rne/Rng family compare
Psest_2293 -1.1 -1.6 hypothetical protein compare
Psest_2317 -1.1 -6.7 Uncharacterized protein conserved in bacteria compare
Psest_1486 -1.1 -2.3 hypothetical protein compare
Psest_2037 -1.1 -5.5 uroporphyrin-III C-methyltransferase compare
Psest_3550 -1.1 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0998 -1.0 -2.2 poly(A) polymerase compare
Psest_0285 -1.0 -6.6 pilus retraction protein PilT compare
Psest_2809 -1.0 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1814 -1.0 -8.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2379 -1.0 -6.1 PAS domain S-box compare
Psest_0413 -1.0 -5.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3645 -1.0 -5.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1974 -1.0 -3.3 integration host factor, alpha subunit compare
Psest_3231 -1.0 -1.5 hypothetical protein compare
Psest_0449 -1.0 -6.1 Glutamine synthetase adenylyltransferase compare
Psest_3449 -1.0 -2.8 DJ-1 family protein compare
Psest_4082 -1.0 -2.4 hypothetical protein compare
Psest_0197 -1.0 -7.2 TRAP transporter, 4TM/12TM fusion protein compare
Psest_0281 -0.9 -6.0 Dynamin family. compare
Psest_0284 -0.9 -5.7 pyridoxal phosphate enzyme, YggS family compare
Psest_0334 -0.9 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1082 -0.9 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1054 -0.9 -4.8 Diaminopimelate decarboxylase compare
Psest_0292 -0.9 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0031 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_2911 -0.8 -2.3 Protein of unknown function (DUF2945). compare
Psest_1260 -0.8 -4.1 type IV pilus biogenesis/stability protein PilW compare
Psest_4124 -0.8 -2.8 hypothetical protein compare
Psest_1510 -0.8 -2.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1204 -0.8 -2.2 Transcriptional regulators compare
Psest_4095 -0.8 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2454 -0.8 -2.0 Rhodanese-related sulfurtransferase compare
Psest_2102 -0.8 -7.4 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_2946 -0.8 -2.3 septum site-determining protein MinD compare
Psest_1516 -0.8 -1.7 Uncharacterized lipoprotein compare
Psest_1888 -0.8 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3228 -0.8 -4.9 Zn-dependent protease with chaperone function compare
Psest_4363 -0.8 -4.8 ATPases involved in chromosome partitioning compare
Psest_3047 -0.8 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1677 -0.8 -2.2 Protein-tyrosine-phosphatase compare
Psest_2864 -0.8 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0182 -0.8 -4.2 glycine cleavage system H protein compare
Psest_0138 -0.8 -4.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3339 -0.8 -3.3 Signal transduction histidine kinase compare
Psest_4088 -0.8 -2.1 Transcriptional regulators compare
Psest_0393 -0.8 -4.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3287 -0.8 -3.2 Type II secretory pathway, component PulF compare
Psest_3860 -0.8 -1.8 Predicted permeases compare
Psest_3377 -0.8 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2748 -0.7 -1.6 Transcriptional regulator compare
Psest_0872 -0.7 -1.2 Helix-turn-helix. compare
Psest_3069 -0.7 -1.5 3-oxoadipate enol-lactonase compare
Psest_1535 -0.7 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0691 -0.7 -5.1 ribonuclease R compare
Psest_2491 -0.7 -4.2 succinyl-CoA synthetase, beta subunit compare
Psest_1327 -0.7 -4.5 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1354 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0709 -0.7 -4.1 pseudouridine synthase, RluA family compare
Psest_0457 -0.7 -2.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0208 -0.7 -4.4 Uncharacterized protein conserved in bacteria compare
Psest_2503 -0.7 -2.9 hypothetical protein compare
Psest_0136 -0.7 -4.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1905 -0.7 -2.1 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0028 -0.7 -2.2 Coproporphyrinogen III oxidase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas stutzeri RCH2

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms