Experiment set12H48 for Pseudomonas stutzeri RCH2

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -6.1 -8.3 Phosphotransferase System HPr (HPr) Family compare
Psest_3648 -5.9 -7.0 anthranilate phosphoribosyltransferase compare
Psest_1636 -5.8 -7.9 putative transporter, required for glycine utilization (from data) conserved
Psest_0153 -5.8 -12.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0508 -5.7 -11.5 gamma-glutamyl phosphate reductase compare
Psest_2591 -5.7 -5.5 3-isopropylmalate dehydratase, large subunit compare
Psest_0954 -5.6 -10.6 Fe-S oxidoreductase compare
Psest_0155 -5.6 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3647 -5.5 -9.7 Indole-3-glycerol phosphate synthase compare
Psest_3650 -5.5 -16.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2650 -5.5 -5.8 hypothetical protein compare
Psest_3711 -5.5 -22.0 Glutamate synthase domain 2 compare
Psest_3862 -5.4 -17.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3649 -5.3 -11.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2590 -5.3 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_3710 -5.2 -21.2 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3384 -5.2 -9.3 glutamate 5-kinase compare
Psest_2578 -5.1 -16.3 O-succinylhomoserine sulfhydrylase compare
Psest_0062 -5.1 -15.0 tryptophan synthase, alpha subunit compare
Psest_2088 -5.1 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3818 -5.1 -11.7 endoribonuclease L-PSP, putative compare
Psest_3298 -5.1 -14.5 histidinol dehydrogenase compare
Psest_0152 -5.0 -9.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_3944 -5.0 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2988 -5.0 -6.8 aspartate kinase, monofunctional class compare
Psest_2584 -5.0 -8.9 Phosphoribosylanthranilate isomerase compare
Psest_0279 -4.9 -8.7 methionine biosynthesis protein MetW compare
Psest_3299 -4.8 -16.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3864 -4.7 -19.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0325 -4.4 -15.9 Putative threonine efflux protein compare
Psest_0952 -4.4 -4.4 Uncharacterized conserved protein compare
Psest_3932 -4.4 -8.3 nitrogen regulation protein NR(I) compare
Psest_0313 -4.3 -7.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0063 -4.2 -14.6 tryptophan synthase, beta subunit compare
Psest_0280 -4.2 -17.4 homoserine O-acetyltransferase compare
Psest_3931 -4.1 -6.4 Signal transduction histidine kinase, nitrogen specific compare
Psest_1640 -4.0 -18.2 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0953 -4.0 -12.7 iron-sulfur cluster-binding protein compare
Psest_3943 -3.9 -6.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2845 -3.8 -13.9 [Protein-PII] uridylyltransferase compare
Psest_2589 -3.8 -11.1 3-isopropylmalate dehydrogenase compare
Psest_3866 -3.8 -22.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3338 -3.7 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0111 -3.6 -13.2 Glycine/D-amino acid oxidases (deaminating) conserved
Psest_3226 -3.6 -1.5 Predicted membrane protein compare
Psest_2579 -3.6 -3.5 amidophosphoribosyltransferase compare
Psest_0326 -3.6 -12.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0687 -3.4 -9.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1772 -3.4 -7.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1295 -3.1 -8.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1496 -3.0 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3139 -3.0 -6.4 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_1473 -2.8 -8.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2872 -2.6 -3.7 protein RecA compare
Psest_1505 -2.5 -3.2 Organic radical activating enzymes compare
Psest_1242 -2.4 -4.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0327 -2.3 -4.8 Transcriptional regulator compare
Psest_3031 -2.2 -1.4 hypothetical protein compare
Psest_0442 -2.1 -3.4 ATPases of the AAA+ class compare
Psest_3377 -2.1 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0398 -2.1 -7.8 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1180 -2.1 -6.1 hydroxypyruvate isomerase compare
Psest_3297 -2.1 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3339 -2.0 -4.6 Signal transduction histidine kinase compare
Psest_0296 -1.9 -9.2 glutathione synthetase, prokaryotic compare
Psest_2324 -1.9 -14.8 hypothetical protein compare
Psest_1013 -1.8 -2.1 phosphoribosylamine--glycine ligase compare
Psest_1037 -1.8 -2.9 acetolactate synthase, small subunit compare
Psest_2329 -1.8 -13.0 Transcriptional regulator compare
Psest_1179 -1.8 -3.0 2-hydroxy-3-oxopropionate reductase compare
Psest_2325 -1.8 -8.8 alpha-L-glutamate ligase-related protein compare
Psest_1474 -1.8 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_0958 -1.7 -7.8 Oligoketide cyclase/lipid transport protein compare
Psest_2946 -1.7 -3.8 septum site-determining protein MinD compare
Psest_1509 -1.7 -6.4 quinolinate synthetase complex, A subunit compare
Psest_3721 -1.7 -7.3 Malic enzyme compare
Psest_0498 -1.7 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_0673 -1.7 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0999 -1.7 -3.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1506 -1.7 -6.4 queuosine biosynthesis protein QueC compare
Psest_1527 -1.6 -12.1 Na+/proline symporter compare
Psest_3960 -1.6 -2.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3129 -1.6 -1.7 tyrosine recombinase XerD compare
Psest_2864 -1.6 -3.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3159 -1.6 -5.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3810 -1.5 -1.4 orotate phosphoribosyltransferase compare
Psest_2083 -1.5 -7.4 Putative sterol carrier protein compare
Psest_0359 -1.5 -4.3 Transcriptional regulators compare
Psest_2134 -1.5 -11.3 amino acid carrier protein compare
Psest_0212 -1.5 -2.4 exodeoxyribonuclease V, gamma subunit compare
Psest_2025 -1.5 -1.7 cold shock domain protein CspD compare
Psest_2935 -1.4 -1.8 hypothetical protein compare
Psest_4287 -1.4 -6.0 Predicted glutamine amidotransferases compare
Psest_3351 -1.4 -6.3 peptide chain release factor 3 compare
Psest_2158 -1.4 -10.9 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2945 -1.4 -1.9 septum site-determining protein MinC compare
Psest_1241 -1.4 -7.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3766 -1.4 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_4298 -1.3 -1.3 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3697 -1.3 -2.8 Outer membrane lipoprotein carrier protein LolA. compare
Psest_4082 -1.3 -3.0 hypothetical protein compare
Psest_3767 -1.3 -3.5 tyrosine recombinase XerC compare
Psest_2809 -1.3 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3998 -1.3 -6.2 glutamate--cysteine ligase compare
Psest_2090 -1.2 -2.8 Protein of unknown function (DUF2970). compare
Psest_0257 -1.2 -3.4 Predicted Zn-dependent peptidases compare
Psest_3322 -1.2 -10.6 TIGR02099 family protein compare
Psest_2907 -1.2 -1.7 Protein of unknown function (DUF3618). compare
Psest_0060 -1.2 -3.0 Predicted Fe-S protein compare
Psest_2645 -1.2 -6.0 Transcriptional regulator compare
Psest_2846 -1.2 -3.7 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_1012 -1.2 -3.9 Signal transduction histidine kinase compare
Psest_1522 -1.1 -3.6 hypothetical protein compare
Psest_3458 -1.1 -2.8 hypothetical protein compare
Psest_2848 -1.1 -2.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1812 -1.1 -5.3 pseudaminic acid CMP-transferase compare
Psest_2643 -1.1 -1.9 Beta-glucosidase-related glycosidases compare
Psest_0158 -1.1 -4.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3910 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1974 -1.1 -3.7 integration host factor, alpha subunit compare
Psest_1488 -1.1 -8.7 outer membrane porin, OprD family. compare
Psest_2714 -1.1 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_3316 -1.0 -3.9 Predicted P-loop-containing kinase compare
Psest_0445 -1.0 -7.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1695 -1.0 -2.6 Tfp pilus assembly protein PilZ compare
Psest_3927 -1.0 -3.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2613 -1.0 -1.7 hypothetical protein compare
Psest_2744 -1.0 -1.3 Uncharacterized conserved protein compare
Psest_1920 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3419 -1.0 -4.7 Predicted transcriptional regulators compare
Psest_2022 -1.0 -2.4 ADP-ribose pyrophosphatase compare
Psest_1313 -1.0 -1.8 Uncharacterized conserved small protein compare
Psest_1058 -1.0 -2.3 ribosomal-protein-alanine acetyltransferase compare
Psest_2849 -1.0 -5.9 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_2460 -1.0 -2.0 hypothetical protein compare
Psest_1492 -0.9 -5.0 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1837 -0.9 -4.4 Endoglucanase compare
Psest_2285 -0.9 -2.5 ATP-dependent protease La compare
Psest_1957 -0.9 -6.7 outer membrane porin, OprD family. compare
Psest_4128 -0.9 -1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1065 -0.9 -1.8 hypothetical protein compare
Psest_0411 -0.9 -5.2 biotin synthetase compare
Psest_3045 -0.9 -1.8 Cold shock proteins compare
Psest_3762 -0.9 -3.1 iron donor protein CyaY compare
Psest_1805 -0.9 -1.6 integration host factor, beta subunit compare
Psest_1486 -0.9 -2.7 hypothetical protein compare
Psest_0484 -0.9 -2.4 hypothetical protein compare
Psest_4284 -0.9 -5.9 Spermidine/putrescine-binding periplasmic protein compare
Psest_2079 -0.9 -6.3 Predicted permeases compare
Psest_3964 -0.9 -6.7 formate dehydrogenase family accessory protein FdhD compare
Psest_1282 -0.9 -1.8 Amidases related to nicotinamidase compare
Psest_1870 -0.9 -0.9 Transcriptional regulators compare
Psest_0181 -0.9 -4.3 glycine cleavage system T protein compare
Psest_2981 -0.9 -1.7 sodium pump decarboxylases, gamma subunit compare
Psest_3720 -0.9 -7.2 penicillin-binding protein, 1A family compare
Psest_0691 -0.9 -6.2 ribonuclease R compare
Psest_0164 -0.8 -0.8 Glutaredoxin, GrxC family compare
Psest_2104 -0.8 -1.3 IscR-regulated protein YhgI compare
Psest_0413 -0.8 -3.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0015 -0.8 -2.5 Tetratricopeptide repeat. compare
Psest_1804 -0.8 -1.7 Superfamily II DNA and RNA helicases compare
Psest_1704 -0.8 -1.2 Dehydrogenases (flavoproteins) compare
Psest_0489 -0.8 -1.1 phosphoserine phosphatase SerB compare
Psest_1491 -0.8 -1.6 Cold shock proteins compare
Psest_1686 -0.8 -3.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1815 -0.8 -5.7 pseudaminic acid synthase compare
Psest_0510 -0.8 -2.8 iojap-like ribosome-associated protein compare
Psest_2748 -0.8 -1.6 Transcriptional regulator compare
Psest_2323 -0.8 -5.2 Uncharacterized protein conserved in archaea compare
Psest_1647 -0.8 -2.4 Lhr-like helicases compare
Psest_1518 -0.8 -1.8 tRNA_Ser_CGA compare
Psest_2288 -0.8 -2.7 trigger factor compare
Psest_2001 -0.8 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1163 -0.8 -2.7 diguanylate cyclase (GGDEF) domain compare
Psest_0412 -0.8 -4.7 8-amino-7-oxononanoate synthase compare
Psest_0725 -0.8 -1.2 Negative regulator of beta-lactamase expression compare
Psest_2851 -0.8 -5.8 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_4309 -0.8 -2.6 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_2120 -0.8 -2.7 Transcriptional regulator compare
Psest_0415 -0.8 -3.0 dethiobiotin synthase compare
Psest_0719 -0.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_4084 -0.8 -5.6 oxaloacetate decarboxylase alpha subunit compare
Psest_3809 -0.8 -3.4 hypothetical protein compare
Psest_2612 -0.8 -2.7 hypothetical protein compare
Psest_0385 -0.8 -1.2 Conserved secreted protein compare
Psest_3771 -0.7 -5.6 probable ammonium transporter, marine subtype compare
Psest_4085 -0.7 -5.5 Biotin carboxylase compare
Psest_3790 -0.7 -4.7 Cytochrome c5 compare
Psest_0297 -0.7 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0175 -0.7 -3.9 Xaa-Pro aminopeptidase compare
Psest_3093 -0.7 -4.4 hypothetical protein compare
Psest_4281 -0.7 -5.4 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_3772 -0.7 -2.1 ammonium transporter compare
Psest_1664 -0.7 -4.6 Glycerophosphoryl diester phosphodiesterase compare
Psest_0306 -0.7 -5.4 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0684 -0.7 -3.0 GTP-binding protein HflX compare
Psest_2530 -0.7 -2.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1884 -0.7 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0349 -0.7 -2.9 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_0846 -0.7 -2.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Pseudomonas stutzeri RCH2

For nitrogen source Glycine across organisms