Experiment set12H48 for Pseudomonas stutzeri RCH2

Compare to:

Glycine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_4078 +3.6 5.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1840 +1.9 17.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4076 +1.7 9.0 hypothetical protein compare
Psest_1655 +1.4 6.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0558 +1.3 1.4 urease, beta subunit compare
Psest_1999 +1.3 2.1 pseudouridine synthase compare
Psest_0401 +1.3 2.8 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3850 +1.3 1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2637 +1.3 2.2 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2066 +1.2 1.3 ABC-type uncharacterized transport system, permease component compare
Psest_1733 +1.2 5.3 flagellar biosynthetic protein FliQ compare
Psest_1635 +1.2 11.1 Signal transduction histidine kinase compare
Psest_2260 +1.2 10.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1718 +1.2 5.1 flagellar hook-basal body complex protein FliE compare
Psest_2585 +1.1 1.5 pseudouridylate synthase I compare
Psest_1719 +1.1 4.8 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_4335 +1.1 2.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1532 +1.0 4.4 DNA recombination-dependent growth factor C compare
Psest_1660 +1.0 1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3206 +1.0 3.6 Uncharacterized protein conserved in bacteria compare
Psest_2136 +1.0 6.9 Predicted homoserine dehydrogenase compare
Psest_1729 +1.0 5.3 flagellar motor switch protein FliM compare
Psest_1661 +1.0 2.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1735 +1.0 6.0 flagellar biosynthetic protein FlhB compare
Psest_3447 +1.0 1.8 Uncharacterized MobA-related protein compare
Psest_0678 +1.0 3.0 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1943 +0.9 5.2 MoxR-like ATPases compare
Psest_1721 +0.9 3.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_4243 +0.9 1.9 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1270 +0.9 4.0 hypothetical protein compare
Psest_0277 +0.9 1.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1720 +0.9 6.4 flagellar motor switch protein FliG compare
Psest_1722 +0.9 6.2 flagellar protein export ATPase FliI compare
Psest_0309 +0.9 0.9 RND family efflux transporter, MFP subunit compare
Psest_4274 +0.9 2.1 hypothetical protein compare
Psest_3001 +0.9 3.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_1115 +0.9 2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2437 +0.9 3.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1725 +0.9 6.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0191 +0.9 1.5 PAS domain S-box compare
Psest_0538 +0.9 8.4 Signal transduction histidine kinase compare
Psest_1659 +0.8 2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1734 +0.8 3.9 flagellar biosynthetic protein FliR compare
Psest_0511 +0.8 0.6 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0842 +0.8 2.3 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1918 +0.8 4.6 Calcineurin-like phosphoesterase. compare
Psest_1938 +0.8 3.8 hypothetical protein compare
Psest_2718 +0.8 1.0 hypothetical protein compare
Psest_1737 +0.8 3.6 flagellar biosynthesis protein FlhA compare
Psest_3890 +0.8 2.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2975 +0.8 2.6 tRNA_Arg_CCT compare
Psest_2965 +0.8 6.6 fagellar hook-basal body proteins compare
Psest_3937 +0.8 1.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0708 +0.8 1.9 outer membrane assembly lipoprotein YfiO compare
Psest_3372 +0.7 5.2 Tfp pilus assembly protein PilW compare
Psest_3536 +0.7 1.2 hypothetical protein compare
Psest_0845 +0.7 1.0 hypothetical protein compare
Psest_3395 +0.7 0.7 hypothetical protein compare
Psest_3954 +0.7 2.2 Small protein A (tmRNA-binding) compare
Psest_3370 +0.7 4.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1890 +0.7 3.8 Uncharacterized conserved protein compare
Psest_4142 +0.7 1.7 hypothetical protein compare
Psest_4126 +0.7 2.2 Predicted peroxiredoxins compare
Psest_3039 +0.7 1.3 periplasmic nitrate reductase, NapE protein compare
Psest_3371 +0.7 4.3 type IV pilus modification protein PilV compare
Psest_0716 +0.7 1.5 Protein of unknown function (DUF3094). compare
Psest_0902 +0.7 2.9 Predicted transcriptional regulators compare
Psest_3080 +0.7 2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_3478 +0.7 1.7 Cytochrome B561 compare
Psest_1731 +0.7 1.6 flagellar biosynthetic protein FliO compare
Psest_0950 +0.7 2.1 hypothetical protein compare
Psest_2047 +0.7 2.2 Signal transduction histidine kinase compare
Psest_3777 +0.7 1.8 diguanylate cyclase (GGDEF) domain compare
Psest_1740 +0.7 5.0 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1738 +0.7 3.0 flagellar biosynthetic protein FlhF compare
Psest_0305 +0.7 3.1 RNA methyltransferase, RsmE family compare
Psest_4315 +0.7 2.0 ABC-type metal ion transport system, permease component compare
Psest_2724 +0.6 1.9 hypothetical protein compare
Psest_3573 +0.6 2.9 dTDP-4-dehydrorhamnose reductase compare
Psest_0440 +0.6 1.9 hypothetical protein compare
Psest_1602 +0.6 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3075 +0.6 4.0 sodium/proline symporter compare
Psest_2333 +0.6 0.6 Protein of unknown function (DUF3359). compare
Psest_3100 +0.6 3.2 RNA polymerase sigma factor RpoE compare
Psest_1184 +0.6 2.0 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3192 +0.6 4.5 diguanylate cyclase (GGDEF) domain compare
Psest_0133 +0.6 1.2 type VI secretion protein, VC_A0107 family compare
Psest_4056 +0.6 2.1 FMN reductase, SsuE family compare
Psest_2708 +0.6 4.1 transaldolase compare
Psest_1819 +0.6 5.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_1657 +0.6 1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4077 +0.6 4.5 amino acid carrier protein compare
Psest_1924 +0.6 5.0 adhesin-associated MmpL efflux pump (from data) compare
Psest_3794 +0.6 4.2 Transcriptional regulators compare
Psest_4221 +0.6 1.8 homoserine kinase, Neisseria type compare
Psest_1939 +0.6 3.0 Tetratricopeptide repeat. compare
Psest_3792 +0.6 1.7 Putative translation initiation inhibitor, yjgF family compare
Psest_0795 +0.6 1.7 ABC-type multidrug transport system, ATPase component compare
Psest_2773 +0.6 3.3 glycerol kinase compare
Psest_1122 +0.6 4.9 putative adhesin (DUF1302) (from data) compare
Psest_2726 +0.6 1.2 Rhodanese-related sulfurtransferase compare
Psest_2480 +0.6 2.0 Methyl-accepting chemotaxis protein compare
Psest_1963 +0.6 1.1 Peptidase inhibitor I78 family. compare
Psest_3896 +0.6 2.2 arsenite-activated ATPase ArsA compare
Psest_1942 +0.6 3.5 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_0237 +0.6 1.6 intracellular protease, PfpI family compare
Psest_1134 +0.6 2.5 alkyl hydroperoxide reductase, F subunit compare
Psest_2358 +0.6 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2766 +0.6 0.8 hypothetical protein compare
Psest_1732 +0.6 2.1 flagellar biosynthetic protein FliP compare
Psest_1574 +0.6 1.5 phenazine biosynthesis protein PhzF family compare
Psest_1817 +0.6 2.2 hypothetical protein compare
Psest_0311 +0.6 2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0457 +0.6 1.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3209 +0.6 2.8 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_3437 +0.6 2.3 diguanylate cyclase (GGDEF) domain compare
Psest_3678 +0.6 2.5 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_2962 +0.6 3.6 Flagellar basal body L-ring protein compare
Psest_1816 +0.6 2.7 hypothetical protein compare
Psest_3784 +0.5 1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3244 +0.5 2.1 Protein of unknown function (DUF2726). compare
Psest_1809 +0.5 4.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0956 +0.5 3.4 Transcriptional regulators compare
Psest_1863 +0.5 1.4 hypothetical protein compare
Psest_4172 +0.5 2.2 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_2243 +0.5 0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1511 +0.5 2.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1723 +0.5 2.5 flagellar export protein FliJ compare
Psest_1728 +0.5 2.9 Flagellar basal body-associated protein compare
Psest_0078 +0.5 0.5 hypothetical protein compare
Psest_0487 +0.5 2.2 Uncharacterized protein conserved in bacteria compare
Psest_0239 +0.5 2.9 formamidopyrimidine-DNA glycosylase (fpg) compare
Psest_3230 +0.5 2.9 Uncharacterized conserved protein compare
Psest_0466 +0.5 2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2421 +0.5 2.6 formate dehydrogenase family accessory protein FdhD compare
Psest_0993 +0.5 4.2 Glucose-6-phosphate isomerase compare
Psest_2425 +0.5 1.1 Trk-type K+ transport systems, membrane components compare
Psest_2511 +0.5 2.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3151 +0.5 1.4 hypothetical protein compare
Psest_1567 +0.5 1.0 Transcriptional regulator compare
Psest_4314 +0.5 1.8 ABC-type metal ion transport system, ATPase component compare
Psest_1663 +0.5 1.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0186 +0.5 2.3 Protein-disulfide isomerase compare
Psest_1326 +0.5 1.4 Uncharacterized conserved protein compare
Psest_2772 +0.5 2.2 MIP family channel proteins compare
Psest_2229 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2961 +0.5 1.7 Flagellar basal-body P-ring protein compare
Psest_3357 +0.5 1.2 Predicted pyrophosphatase compare
Psest_4404 +0.5 3.5 hypothetical protein compare
Psest_2510 +0.5 3.3 chromosome segregation protein SMC, common bacterial type compare
Psest_0416 +0.5 2.4 hypothetical protein compare
Psest_3373 +0.5 2.1 Tfp pilus assembly protein PilX compare
Psest_2903 +0.5 1.9 Site-specific recombinase XerD compare
Psest_1062 +0.5 2.4 Carbonic anhydrase compare
Psest_0227 +0.5 1.2 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_2959 +0.5 3.9 flagellar hook-associated protein FlgK compare
Psest_1961 +0.5 3.4 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1539 +0.5 2.8 Mn2+ and Fe2+ transporters of the NRAMP family compare
Psest_1318 +0.5 2.2 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_3173 +0.5 2.0 Uncharacterized protein conserved in bacteria compare
Psest_3078 +0.5 3.0 L-proline:Na+ symporter (from data) compare
Psest_4252 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Psest_3177 +0.5 0.8 hypothetical protein compare
Psest_4303 +0.5 0.9 HEAT repeat. compare
Psest_3761 +0.5 1.4 Transcription elongation factor compare
Psest_2964 +0.5 1.7 flagellar basal-body rod protein FlgF compare
Psest_1741 +0.5 0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2725 +0.5 1.0 hypothetical protein compare
Psest_0459 +0.5 3.3 Predicted carbamoyl transferase, NodU family compare
Psest_2730 +0.5 2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3231 +0.5 1.6 hypothetical protein compare
Psest_4064 +0.5 1.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_0137 +0.5 2.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4134 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Psest_2622 +0.5 1.6 TadE-like protein. compare
Psest_3662 +0.5 1.5 DnaJ-domain-containing proteins 1 compare
Psest_3389 +0.5 1.3 hypothetical protein compare
Psest_1217 +0.5 2.5 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_3336 +0.4 2.2 Membrane proteins related to metalloendopeptidases compare
Psest_0634 +0.4 2.4 hypothetical protein compare
Psest_3174 +0.4 3.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3479 +0.4 2.4 molybdenum cofactor synthesis domain compare
Psest_1750 +0.4 1.2 Protein of unknown function (DUF2802). compare
Psest_1717 +0.4 2.0 benzoate transporter compare
Psest_3546 +0.4 0.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4273 +0.4 2.7 Lysophospholipase compare
Psest_3079 +0.4 2.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) compare
Psest_1464 +0.4 2.8 Selenocysteine lyase compare
Psest_2768 +0.4 1.2 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_3374 +0.4 3.1 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_2647 +0.4 1.2 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_2422 +0.4 2.7 oxidoreductase alpha (molybdopterin) subunit compare
Psest_1744 +0.4 2.4 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_0066 +0.4 0.8 Protein of unknown function (DUF3060). compare
Psest_2308 +0.4 0.5 Predicted Fe-S protein compare
Psest_3217 +0.4 4.0 PAS domain S-box compare
Psest_1194 +0.4 2.3 Kef-type K+ transport system, predicted NAD-binding component compare
Psest_3782 +0.4 1.9 Alcohol dehydrogenase, class IV compare
Psest_4113 +0.4 2.1 hypothetical protein compare
Psest_1925 +0.4 2.4 uroporphyrin-III C-methyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Pseudomonas stutzeri RCH2

For nitrogen source Glycine across organisms