Experiment set12H46 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_2088 -6.7 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0508 -6.3 -7.5 gamma-glutamyl phosphate reductase compare
Psest_2578 -6.1 -8.4 O-succinylhomoserine sulfhydrylase compare
Psest_3866 -5.9 -14.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3650 -5.7 -13.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0152 -5.7 -6.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3647 -5.7 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_3649 -5.7 -8.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3648 -5.6 -6.7 anthranilate phosphoribosyltransferase compare
Psest_0279 -5.5 -6.6 methionine biosynthesis protein MetW compare
Psest_3944 -5.5 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3721 -5.4 -9.1 Malic enzyme compare
Psest_0280 -5.4 -14.4 homoserine O-acetyltransferase compare
Psest_3818 -5.4 -9.0 endoribonuclease L-PSP, putative compare
Psest_2591 -5.4 -5.2 3-isopropylmalate dehydratase, large subunit compare
Psest_2584 -5.4 -7.3 Phosphoribosylanthranilate isomerase compare
Psest_3864 -5.2 -15.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0153 -5.2 -14.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -5.1 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0062 -5.1 -15.0 tryptophan synthase, alpha subunit compare
Psest_3384 -5.1 -9.1 glutamate 5-kinase compare
Psest_3299 -5.0 -16.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3298 -5.0 -12.8 histidinol dehydrogenase compare
Psest_0063 -4.9 -11.0 tryptophan synthase, beta subunit compare
Psest_1473 -4.9 -8.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0313 -4.7 -3.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0325 -4.4 -14.9 Putative threonine efflux protein compare
Psest_0687 -4.2 -10.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0155 -4.2 -9.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2589 -4.1 -13.4 3-isopropylmalate dehydrogenase compare
Psest_3943 -4.0 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3998 -3.9 -7.5 glutamate--cysteine ligase compare
Psest_0326 -3.7 -14.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1295 -3.5 -7.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1772 -3.4 -6.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3766 -3.4 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_2329 -3.4 -18.2 Transcriptional regulator compare
Psest_2579 -3.4 -4.0 amidophosphoribosyltransferase compare
Psest_1695 -2.9 -6.1 Tfp pilus assembly protein PilZ compare
Psest_3226 -2.8 -1.5 Predicted membrane protein compare
Psest_1037 -2.7 -2.5 acetolactate synthase, small subunit compare
Psest_0952 -2.6 -4.0 Uncharacterized conserved protein compare
Psest_0327 -2.6 -5.1 Transcriptional regulator compare
Psest_3711 -2.5 -17.3 Glutamate synthase domain 2 compare
Psest_1012 -2.4 -5.2 Signal transduction histidine kinase compare
Psest_1496 -2.4 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_0954 -2.4 -7.9 Fe-S oxidoreductase compare
Psest_2325 -2.4 -9.3 alpha-L-glutamate ligase-related protein compare
Psest_3710 -2.3 -15.8 glutamate synthase small subunit family protein, proteobacterial compare
Psest_0182 -2.3 -9.3 glycine cleavage system H protein compare
Psest_1505 -2.3 -3.1 Organic radical activating enzymes compare
Psest_1686 -2.2 -6.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2323 -2.2 -12.7 Uncharacterized protein conserved in archaea compare
Psest_3297 -2.2 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3884 -2.2 -1.7 Signal transduction histidine kinase compare
Psest_3536 -2.2 -2.3 hypothetical protein compare
Psest_2090 -2.2 -4.6 Protein of unknown function (DUF2970). compare
Psest_1013 -2.1 -1.5 phosphoribosylamine--glycine ligase compare
Psest_2324 -2.1 -15.2 hypothetical protein compare
Psest_3931 -2.1 -5.5 Signal transduction histidine kinase, nitrogen specific compare
Psest_3932 -2.1 -6.0 nitrogen regulation protein NR(I) compare
Psest_0442 -2.0 -3.9 ATPases of the AAA+ class compare
Psest_0491 -2.0 -12.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0489 -2.0 -1.4 phosphoserine phosphatase SerB compare
Psest_2945 -2.0 -2.2 septum site-determining protein MinC compare
Psest_0999 -2.0 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2123 -1.9 -3.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3645 -1.9 -10.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0953 -1.9 -8.4 iron-sulfur cluster-binding protein compare
Psest_3159 -1.9 -5.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3809 -1.8 -5.6 hypothetical protein compare
Psest_1724 -1.8 -4.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1474 -1.7 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_0284 -1.7 -11.8 pyridoxal phosphate enzyme, YggS family compare
Psest_2845 -1.7 -9.9 [Protein-PII] uridylyltransferase compare
Psest_4005 -1.7 -5.4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_0498 -1.7 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_3338 -1.7 -1.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3806 -1.6 -6.4 Phosphomannomutase compare
Psest_2122 -1.6 -1.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2018 -1.6 -4.1 Uncharacterized conserved protein compare
Psest_3301 -1.6 -4.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_3720 -1.6 -12.3 penicillin-binding protein, 1A family compare
Psest_3322 -1.6 -12.6 TIGR02099 family protein compare
Psest_3161 -1.6 -9.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3715 -1.6 -11.4 type IV pilus secretin (or competence protein) PilQ compare
Psest_1704 -1.6 -1.9 Dehydrogenases (flavoproteins) compare
Psest_0300 -1.5 -7.1 Methyl-accepting chemotaxis protein compare
Psest_4077 -1.5 -9.4 amino acid carrier protein compare
Psest_0445 -1.5 -9.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3375 -1.5 -7.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2327 -1.5 -7.2 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3288 -1.5 -9.3 type IV-A pilus assembly ATPase PilB compare
Psest_2946 -1.5 -3.2 septum site-determining protein MinD compare
Psest_3810 -1.5 -1.4 orotate phosphoribosyltransferase compare
Psest_2809 -1.5 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3286 -1.5 -7.3 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0024 -1.4 -8.2 LysM domain. compare
Psest_3351 -1.4 -6.0 peptide chain release factor 3 compare
Psest_3287 -1.4 -5.2 Type II secretory pathway, component PulF compare
Psest_0705 -1.4 -9.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1167 -1.3 -1.3 hypothetical protein compare
Psest_3162 -1.3 -7.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1179 -1.3 -2.4 2-hydroxy-3-oxopropionate reductase compare
Psest_1506 -1.3 -5.4 queuosine biosynthesis protein QueC compare
Psest_3289 -1.3 -5.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2285 -1.3 -3.4 ATP-dependent protease La compare
Psest_3719 -1.3 -8.6 type IV pilus assembly protein PilM compare
Psest_4191 -1.3 -3.5 Transcriptional regulator compare
Psest_2333 -1.3 -0.8 Protein of unknown function (DUF3359). compare
Psest_1805 -1.3 -2.3 integration host factor, beta subunit compare
Psest_0771 -1.2 -8.0 Acyl-CoA hydrolase compare
Psest_1163 -1.2 -3.9 diguanylate cyclase (GGDEF) domain compare
Psest_3716 -1.2 -6.7 Tfp pilus assembly protein PilP compare
Psest_0484 -1.2 -2.6 hypothetical protein compare
Psest_0297 -1.2 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2850 -1.2 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2872 -1.2 -1.8 protein RecA compare
Psest_0119 -1.1 -2.2 hypothetical protein compare
Psest_2566 -1.1 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2862 -1.1 -6.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3767 -1.1 -3.3 tyrosine recombinase XerC compare
Psest_2586 -1.1 -9.2 FimV N-terminal domain compare
Psest_3163 -1.1 -5.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain conserved
Psest_0969 -1.1 -1.6 transcription elongation factor GreA compare
Psest_3717 -1.1 -4.2 Tfp pilus assembly protein PilO compare
Psest_0706 -1.1 -5.5 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2810 -1.1 -4.4 5'/3'-nucleotidase SurE compare
Psest_1260 -1.1 -4.2 type IV pilus biogenesis/stability protein PilW compare
Psest_2911 -1.1 -2.1 Protein of unknown function (DUF2945). compare
Psest_1905 -1.0 -2.9 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3458 -1.0 -2.3 hypothetical protein compare
Psest_1277 -1.0 -6.5 2-isopropylmalate synthase, yeast type compare
Psest_1242 -1.0 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0138 -1.0 -5.6 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1920 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2613 -1.0 -1.6 hypothetical protein compare
Psest_1540 -1.0 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_0136 -1.0 -6.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2530 -1.0 -3.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2304 -1.0 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0137 -1.0 -4.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2101 -1.0 -1.5 hypothetical protein compare
Psest_2120 -1.0 -3.2 Transcriptional regulator compare
Psest_0867 -1.0 -1.5 hypothetical protein compare
Psest_2102 -1.0 -8.4 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_1241 -1.0 -5.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3718 -1.0 -3.5 Tfp pilus assembly protein PilN compare
Psest_0028 -0.9 -3.2 Coproporphyrinogen III oxidase compare
Psest_0257 -0.9 -2.6 Predicted Zn-dependent peptidases compare
Psest_0707 -0.9 -4.0 MYND finger. compare
Psest_2527 -0.9 -4.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1679 -0.9 -1.4 ribonuclease, Rne/Rng family compare
Psest_0064 -0.9 -1.9 Transcriptional regulator compare
Psest_2612 -0.9 -2.9 hypothetical protein compare
Psest_4363 -0.9 -4.1 ATPases involved in chromosome partitioning compare
Psest_1804 -0.9 -1.6 Superfamily II DNA and RNA helicases compare
Psest_4067 -0.9 -2.4 Predicted membrane protein compare
Psest_2899 -0.9 -1.0 hypothetical protein compare
Psest_3084 -0.9 -1.4 methyltransferase, putative compare
Psest_2758 -0.8 -1.8 Predicted transcriptional regulators compare
Psest_3927 -0.8 -3.2 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4021 -0.8 -3.6 hypothetical protein compare
Psest_3790 -0.8 -5.3 Cytochrome c5 compare
Psest_0294 -0.8 -2.9 Putative transcriptional regulator compare
Psest_4345 -0.8 -5.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0411 -0.8 -4.6 biotin synthetase compare
Psest_2278 -0.8 -2.0 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0285 -0.8 -4.4 pilus retraction protein PilT compare
Psest_4128 -0.8 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1879 -0.8 -2.1 Trk-type K+ transport systems, membrane components compare
Psest_3339 -0.8 -3.4 Signal transduction histidine kinase compare
Psest_1488 -0.8 -6.5 outer membrane porin, OprD family. compare
Psest_0575 -0.8 -0.7 HrpA-like helicases compare
Psest_3754 -0.8 -2.5 Uncharacterized protein involved in response to NO compare
Psest_1204 -0.8 -2.1 Transcriptional regulators compare
Psest_4085 -0.8 -5.6 Biotin carboxylase compare
Psest_1479 -0.8 -3.2 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3832 -0.8 -1.7 hypothetical protein compare
Psest_0558 -0.8 -0.5 urease, beta subunit compare
Psest_0872 -0.8 -0.9 Helix-turn-helix. compare
Psest_0139 -0.8 -2.3 ABC-type histidine transport system, ATPase component compare
Psest_0334 -0.8 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4151 -0.8 -1.6 Flagellar hook capping protein compare
Psest_1709 -0.8 -2.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4049 -0.8 -1.3 hypothetical protein compare
Psest_3744 -0.7 -3.3 Disulfide bond formation protein DsbB compare
Psest_3777 -0.7 -2.2 diguanylate cyclase (GGDEF) domain compare
Psest_3367 -0.7 -1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_1643 -0.7 -0.9 hypothetical protein compare
Psest_3535 -0.7 -2.4 hypothetical protein compare
Psest_0248 -0.7 -3.3 Transcriptional regulator compare
Psest_2983 -0.7 -2.3 hypothetical protein compare
Psest_1860 -0.7 -1.9 Uncharacterized conserved protein compare
Psest_4044 -0.7 -2.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0412 -0.7 -4.6 8-amino-7-oxononanoate synthase compare
Psest_1813 -0.7 -5.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3307 -0.7 -3.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4297 -0.7 -5.0 PAS domain S-box compare
Psest_2641 -0.7 -4.7 Conserved secreted protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Glutamine in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamine across organisms