Experiment set12H46 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_4078 +3.0 10.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4076 +1.6 4.3 hypothetical protein compare
Psest_1733 +1.5 5.1 flagellar biosynthetic protein FliQ compare
Psest_3937 +1.4 4.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1840 +1.2 11.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1122 +1.2 10.2 putative adhesin (DUF1302) (from data) compare
Psest_0309 +1.2 1.6 RND family efflux transporter, MFP subunit compare
Psest_2561 +1.2 1.9 hypothetical protein compare
Psest_3850 +1.2 1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1923 +1.2 4.7 adhesin-associated BNR repeat protein (from data) compare
Psest_2136 +1.2 7.8 Predicted homoserine dehydrogenase compare
Psest_2260 +1.2 10.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +1.2 10.7 Signal transduction histidine kinase compare
Psest_1718 +1.1 4.3 flagellar hook-basal body complex protein FliE compare
Psest_1924 +1.1 9.7 adhesin-associated MmpL efflux pump (from data) compare
Psest_1729 +1.1 5.5 flagellar motor switch protein FliM compare
Psest_1721 +1.1 4.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1723 +1.1 7.7 flagellar export protein FliJ compare
Psest_0538 +1.0 10.2 Signal transduction histidine kinase compare
Psest_1734 +1.0 4.3 flagellar biosynthetic protein FliR compare
Psest_1719 +1.0 4.7 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_0260 +1.0 1.8 Cell division protein compare
Psest_2308 +1.0 1.7 Predicted Fe-S protein compare
Psest_1720 +1.0 6.7 flagellar motor switch protein FliG compare
Psest_3047 +1.0 1.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0487 +1.0 4.0 Uncharacterized protein conserved in bacteria compare
Psest_0725 +1.0 1.4 Negative regulator of beta-lactamase expression compare
Psest_2437 +1.0 2.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0401 +1.0 2.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1663 +1.0 2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1740 +1.0 6.0 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_0609 +0.9 1.5 hypothetical protein compare
Psest_0243 +0.9 1.7 hypothetical protein compare
Psest_1735 +0.9 4.6 flagellar biosynthetic protein FlhB compare
Psest_0744 +0.9 1.4 Uncharacterized conserved protein compare
Psest_3890 +0.9 1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3828 +0.9 1.6 zinc-binding alcohol dehydrogenase family protein compare
Psest_1722 +0.9 6.5 flagellar protein export ATPase FliI compare
Psest_1737 +0.9 5.8 flagellar biosynthesis protein FlhA compare
Psest_1725 +0.8 6.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2243 +0.8 1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3693 +0.8 1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3237 +0.8 1.4 hypothetical protein compare
Psest_2965 +0.8 7.0 fagellar hook-basal body proteins compare
Psest_3735 +0.8 0.9 uncharacterized domain 1 compare
Psest_2637 +0.8 1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1731 +0.8 1.9 flagellar biosynthetic protein FliO compare
Psest_0511 +0.8 1.2 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2001 +0.8 1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1728 +0.8 3.9 Flagellar basal body-associated protein compare
Psest_2847 +0.8 2.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_3954 +0.8 2.5 Small protein A (tmRNA-binding) compare
Psest_1567 +0.8 2.3 Transcriptional regulator compare
Psest_3545 +0.7 3.4 clan AA aspartic protease, TIGR02281 family compare
Psest_0066 +0.7 1.3 Protein of unknown function (DUF3060). compare
Psest_2976 +0.7 1.6 hypothetical protein compare
Psest_0083 +0.7 1.4 Uncharacterized conserved protein compare
Psest_1940 +0.7 3.2 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3960 +0.7 1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2950 +0.7 2.4 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_3247 +0.7 1.7 Uncharacterized membrane protein compare
Psest_2539 +0.7 1.6 adenine phosphoribosyltransferase compare
Psest_1732 +0.7 2.6 flagellar biosynthetic protein FliP compare
Psest_0165 +0.7 2.8 protein-export chaperone SecB compare
Psest_1176 +0.7 3.1 Urea transporter compare
Psest_2718 +0.7 1.0 hypothetical protein compare
Psest_2768 +0.7 1.2 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_3546 +0.7 1.2 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2557 +0.7 2.0 Protein of unknown function (DUF2474). compare
Psest_3819 +0.7 3.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0716 +0.7 1.2 Protein of unknown function (DUF3094). compare
Psest_1942 +0.7 3.7 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2966 +0.7 3.4 Flagellar hook capping protein compare
Psest_3001 +0.7 2.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_0814 +0.7 1.2 MoxR-like ATPases compare
Psest_1166 +0.7 1.9 transcriptional regulator, ArgP family compare
Psest_1326 +0.7 2.2 Uncharacterized conserved protein compare
Psest_3839 +0.6 2.4 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2047 +0.6 2.1 Signal transduction histidine kinase compare
Psest_2885 +0.6 2.2 Acyl carrier protein compare
Psest_4343 +0.6 2.0 Protein of unknown function (DUF3301). compare
Psest_0959 +0.6 1.2 Uncharacterized protein conserved in bacteria compare
Psest_2671 +0.6 1.2 Transcriptional regulator compare
Psest_1938 +0.6 2.5 hypothetical protein compare
Psest_2726 +0.6 1.2 Rhodanese-related sulfurtransferase compare
Psest_3209 +0.6 1.8 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_2248 +0.6 1.3 Predicted transcriptional regulators compare
Psest_2720 +0.6 1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3244 +0.6 2.5 Protein of unknown function (DUF2726). compare
Psest_1462 +0.6 1.9 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_3383 +0.6 1.6 Uncharacterized protein conserved in bacteria compare
Psest_1671 +0.6 2.7 DNA internalization-related competence protein ComEC/Rec2 compare
Psest_2961 +0.6 2.6 Flagellar basal-body P-ring protein compare
Psest_4075 +0.6 3.3 symporter for L-glutamate, L-glutamine, and L-proline (from data) compare
Psest_0225 +0.6 1.6 Predicted permease, DMT superfamily compare
Psest_0348 +0.6 2.2 hypothetical protein compare
Psest_0089 +0.6 2.4 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_0548 +0.6 2.0 Urease accessory protein UreE compare
Psest_0922 +0.6 1.2 alkylhydroperoxidase AhpD family core domain compare
Psest_3372 +0.6 3.5 Tfp pilus assembly protein PilW compare
Psest_4193 +0.5 3.5 Predicted signal transduction protein compare
Psest_4382 +0.5 4.8 hypothetical protein compare
Psest_2585 +0.5 0.7 pseudouridylate synthase I compare
Psest_3895 +0.5 2.0 hypothetical protein compare
Psest_2736 +0.5 1.7 Transposase and inactivated derivatives compare
Psest_2924 +0.5 1.8 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3331 +0.5 1.3 rare lipoprotein A compare
Psest_3965 +0.5 2.8 hypothetical protein compare
Psest_0209 +0.5 1.4 membrane protein AbrB duplication compare
Psest_4310 +0.5 1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3142 +0.5 3.6 Uncharacterized protein conserved in bacteria compare
Psest_0497 +0.5 2.3 Flagellar motor protein compare
Psest_1518 +0.5 0.9 tRNA_Ser_CGA compare
Psest_2756 +0.5 0.5 hypothetical protein compare
Psest_1428 +0.5 1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3122 +0.5 2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0778 +0.5 1.4 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_0869 +0.5 1.0 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3816 +0.5 0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_3841 +0.5 3.0 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_4278 +0.5 2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3192 +0.5 2.6 diguanylate cyclase (GGDEF) domain compare
Psest_4390 +0.5 1.8 hypothetical protein compare
Psest_1408 +0.5 1.7 Predicted unusual protein kinase compare
Psest_0061 +0.5 0.8 hypothetical protein compare
Psest_3837 +0.5 2.6 malate synthase G compare
Psest_1305 +0.5 1.7 Heat shock protein compare
Psest_0310 +0.5 1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2779 +0.5 1.6 Methyl-accepting chemotaxis protein compare
Psest_2253 +0.5 1.3 small redox-active disulfide protein 2 compare
Psest_0652 +0.5 1.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2630 +0.5 2.2 hypothetical protein compare
Psest_0496 +0.5 2.7 flagellar motor stator protein MotA compare
Psest_3694 +0.5 2.3 Predicted acyltransferase compare
Psest_2126 +0.5 2.0 Transcriptional regulators compare
Psest_2959 +0.5 3.7 flagellar hook-associated protein FlgK compare
Psest_2725 +0.5 1.8 hypothetical protein compare
Psest_0547 +0.5 1.3 Urease accessory protein UreF compare
Psest_0799 +0.5 1.8 Uncharacterized protein involved in response to NO compare
Psest_3459 +0.5 1.6 hypothetical protein compare
Psest_3334 +0.5 2.2 Integral membrane protein CcmA involved in cell shape determination compare
Psest_3564 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Psest_2066 +0.5 0.7 ABC-type uncharacterized transport system, permease component compare
Psest_2091 +0.5 1.3 Molecular chaperone (small heat shock protein) compare
Psest_3692 +0.5 1.6 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0187 +0.5 1.5 Metal-dependent hydrolase compare
Psest_3467 +0.5 2.3 PAP2 (acid phosphatase) superfamily protein compare
Psest_0355 +0.5 0.8 Glycine cleavage system regulatory protein compare
Psest_4152 +0.5 1.8 flagellar basal-body rod protein FlgC compare
Psest_1451 +0.5 1.2 Uncharacterized ABC-type transport system, permease components compare
Psest_4147 +0.4 2.2 Flagellar basal body L-ring protein compare
Psest_1207 +0.4 1.5 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
Psest_2973 +0.4 1.7 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1631 +0.4 0.9 Uncharacterized conserved small protein compare
Psest_3762 +0.4 1.8 iron donor protein CyaY compare
Psest_1626 +0.4 1.2 Predicted integral membrane protein compare
Psest_3455 +0.4 1.6 Dihaem cytochrome c. compare
Psest_1610 +0.4 1.6 hypothetical protein compare
Psest_2092 +0.4 1.1 hypothetical protein compare
Psest_3217 +0.4 4.1 PAS domain S-box compare
Psest_1530 +0.4 2.1 Predicted membrane protein compare
Psest_1863 +0.4 1.3 hypothetical protein compare
Psest_0118 +0.4 1.9 Predicted membrane protein compare
Psest_0950 +0.4 1.5 hypothetical protein compare
Psest_1053 +0.4 1.0 hypothetical protein compare
Psest_2594 +0.4 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1741 +0.4 0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0987 +0.4 1.1 Predicted periplasmic or secreted lipoprotein compare
Psest_4317 +0.4 2.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_4092 +0.4 2.5 Ectoine synthase. compare
Psest_2894 +0.4 0.9 addiction module antidote protein, HigA family compare
Psest_3332 +0.4 2.7 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_1595 +0.4 0.8 Copper chaperone compare
Psest_2070 +0.4 2.6 FOG: LysM repeat compare
Psest_1943 +0.4 2.6 MoxR-like ATPases compare
Psest_3516 +0.4 1.9 Leucine dehydrogenase (EC 1.4.1.9) (from data) compare
Psest_3042 +0.4 0.4 Nitrate reductase cytochrome c-type subunit compare
Psest_4341 +0.4 1.6 hypothetical protein compare
Psest_4249 +0.4 2.1 Rhs element Vgr protein compare
Psest_4186 +0.4 1.6 Methylase of polypeptide chain release factors compare
Psest_3354 +0.4 1.6 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_0644 +0.4 1.1 siderophore ferric iron reductase, AHA_1954 family compare
Psest_0708 +0.4 0.7 outer membrane assembly lipoprotein YfiO compare
Psest_2962 +0.4 2.7 Flagellar basal body L-ring protein compare
Psest_1514 +0.4 1.5 Glycine cleavage system regulatory protein compare
Psest_1419 +0.4 1.9 Transcriptional regulator compare
Psest_2895 +0.4 1.9 Uncharacterized conserved protein compare
Psest_3562 +0.4 1.1 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0902 +0.4 1.5 Predicted transcriptional regulators compare
Psest_4149 +0.4 1.3 fagellar hook-basal body proteins compare
Psest_0299 +0.4 1.3 Chemotaxis signal transduction protein compare
Psest_2096 +0.4 0.9 Domain of unknown function (DUF1883). compare
Psest_0161 +0.4 0.8 Membrane-bound metallopeptidase compare
Psest_4064 +0.4 1.0 Lactate dehydrogenase and related dehydrogenases compare
Psest_2626 +0.4 1.6 Flp pilus assembly protein CpaB compare
Psest_3522 +0.4 1.2 3-hydroxybutyrate dehydrogenase compare
Psest_1115 +0.4 1.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0105 +0.4 1.9 malonate decarboxylase, beta subunit compare
Psest_1184 +0.4 1.1 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3198 +0.4 2.1 Putative hemolysin compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Glutamine in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamine across organisms