Experiment set12H44 for Pseudomonas stutzeri RCH2

Compare to:

L-Asparagine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3647 -6.8 -4.7 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.3 -7.5 gamma-glutamyl phosphate reductase compare
Psest_0152 -6.2 -6.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3650 -6.1 -10.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3944 -6.0 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3866 -5.8 -16.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0279 -5.8 -6.9 methionine biosynthesis protein MetW compare
Psest_0153 -5.7 -11.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -5.7 -6.8 anthranilate phosphoribosyltransferase compare
Psest_3649 -5.7 -8.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3299 -5.5 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0062 -5.5 -14.2 tryptophan synthase, alpha subunit compare
Psest_2591 -5.5 -5.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3384 -5.4 -7.4 glutamate 5-kinase compare
Psest_0280 -5.3 -15.0 homoserine O-acetyltransferase compare
Psest_0326 -5.3 -19.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2584 -5.3 -6.2 Phosphoribosylanthranilate isomerase compare
Psest_1473 -5.3 -6.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0155 -5.3 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3721 -5.2 -10.5 Malic enzyme compare
Psest_2578 -5.2 -14.5 O-succinylhomoserine sulfhydrylase compare
Psest_2590 -5.2 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0063 -5.1 -10.9 tryptophan synthase, beta subunit compare
Psest_2088 -5.0 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3298 -4.9 -13.8 histidinol dehydrogenase compare
Psest_0325 -4.9 -14.9 Putative threonine efflux protein compare
Psest_3818 -4.9 -9.3 endoribonuclease L-PSP, putative compare
Psest_3864 -4.8 -17.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0313 -4.8 -3.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4078 -4.7 -3.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3226 -4.6 -1.6 Predicted membrane protein compare
Psest_3943 -4.4 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0687 -4.3 -10.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -4.2 -12.9 3-isopropylmalate dehydrogenase compare
Psest_3998 -4.2 -5.7 glutamate--cysteine ligase compare
Psest_2090 -4.0 -5.1 Protein of unknown function (DUF2970). compare
Psest_3297 -4.0 -15.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2329 -3.7 -20.8 Transcriptional regulator compare
Psest_0954 -3.7 -12.0 Fe-S oxidoreductase compare
Psest_1772 -3.6 -5.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1686 -3.5 -8.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1037 -3.5 -4.5 acetolactate synthase, small subunit compare
Psest_0952 -3.5 -4.6 Uncharacterized conserved protein compare
Psest_2579 -3.4 -4.1 amidophosphoribosyltransferase compare
Psest_0953 -3.2 -14.9 iron-sulfur cluster-binding protein compare
Psest_0327 -2.9 -6.1 Transcriptional regulator compare
Psest_2325 -2.7 -13.0 alpha-L-glutamate ligase-related protein compare
Psest_0284 -2.6 -16.0 pyridoxal phosphate enzyme, YggS family compare
Psest_3710 -2.6 -17.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2650 -2.5 -5.3 hypothetical protein compare
Psest_1496 -2.4 -2.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_1724 -2.4 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3301 -2.3 -5.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_0498 -2.3 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_3351 -2.3 -7.4 peptide chain release factor 3 compare
Psest_2324 -2.3 -15.8 hypothetical protein compare
Psest_3711 -2.3 -16.1 Glutamate synthase domain 2 compare
Psest_1013 -2.2 -1.5 phosphoribosylamine--glycine ligase compare
Psest_0442 -2.2 -2.9 ATPases of the AAA+ class compare
Psest_2323 -2.2 -12.8 Uncharacterized protein conserved in archaea compare
Psest_0138 -2.1 -11.6 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3159 -2.1 -5.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2333 -2.1 -1.2 Protein of unknown function (DUF3359). compare
Psest_0413 -2.1 -9.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0489 -2.1 -1.4 phosphoserine phosphatase SerB compare
Psest_0136 -2.0 -12.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0306 -2.0 -14.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0411 -2.0 -11.3 biotin synthetase compare
Psest_1695 -1.9 -6.8 Tfp pilus assembly protein PilZ compare
Psest_0415 -1.9 -4.2 dethiobiotin synthase compare
Psest_0412 -1.9 -11.3 8-amino-7-oxononanoate synthase compare
Psest_3766 -1.8 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_1474 -1.8 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_3810 -1.7 -1.2 orotate phosphoribosyltransferase compare
Psest_2946 -1.7 -3.5 septum site-determining protein MinD compare
Psest_0955 -1.6 -5.0 D,L-lactate:H+ symporter (from data) compare
Psest_1509 -1.6 -9.8 quinolinate synthetase complex, A subunit compare
Psest_0139 -1.6 -3.6 ABC-type histidine transport system, ATPase component compare
Psest_0137 -1.6 -7.2 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1012 -1.6 -4.5 Signal transduction histidine kinase compare
Psest_1277 -1.5 -10.0 2-isopropylmalate synthase, yeast type compare
Psest_4191 -1.5 -3.8 Transcriptional regulator compare
Psest_2327 -1.4 -6.3 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_1506 -1.4 -5.9 queuosine biosynthesis protein QueC compare
Psest_0414 -1.4 -5.0 biotin biosynthesis protein BioC compare
Psest_3809 -1.4 -4.6 hypothetical protein compare
Psest_3720 -1.4 -11.4 penicillin-binding protein, 1A family compare
Psest_3843 -1.4 -7.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0028 -1.4 -4.1 Coproporphyrinogen III oxidase compare
Psest_4044 -1.4 -2.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1295 -1.4 -6.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2651 -1.3 -3.5 DNA topoisomerase I, bacterial compare
Psest_1661 -1.3 -2.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3322 -1.3 -11.5 TIGR02099 family protein compare
Psest_2561 -1.3 -1.3 hypothetical protein compare
Psest_1704 -1.3 -1.6 Dehydrogenases (flavoproteins) compare
Psest_2945 -1.3 -1.6 septum site-determining protein MinC compare
Psest_1167 -1.3 -1.4 hypothetical protein compare
Psest_4142 -1.2 -1.1 hypothetical protein compare
Psest_0722 -1.2 -5.8 Predicted ATPase compare
Psest_0872 -1.2 -1.4 Helix-turn-helix. compare
Psest_3932 -1.2 -4.4 nitrogen regulation protein NR(I) compare
Psest_3806 -1.2 -5.6 Phosphomannomutase compare
Psest_2527 -1.2 -5.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3146 -1.2 -2.1 hypothetical protein compare
Psest_1292 -1.1 -6.6 monothiol glutaredoxin, Grx4 family compare
Psest_2872 -1.1 -2.1 protein RecA compare
Psest_2530 -1.1 -4.3 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4128 -1.1 -1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3377 -1.1 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3862 -1.1 -8.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2001 -1.1 -1.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2091 -1.1 -2.0 Molecular chaperone (small heat shock protein) compare
Psest_2643 -1.0 -1.8 Beta-glucosidase-related glycosidases compare
Psest_2104 -1.0 -1.6 IscR-regulated protein YhgI compare
Psest_0182 -1.0 -4.1 glycine cleavage system H protein compare
Psest_0257 -1.0 -2.3 Predicted Zn-dependent peptidases compare
Psest_2532 -1.0 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0445 -1.0 -7.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0334 -1.0 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3931 -1.0 -3.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_2862 -1.0 -5.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0297 -1.0 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0491 -1.0 -7.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1574 -1.0 -2.2 phenazine biosynthesis protein PhzF family compare
Psest_3288 -1.0 -7.6 type IV-A pilus assembly ATPase PilB compare
Psest_0296 -1.0 -5.5 glutathione synthetase, prokaryotic compare
Psest_2101 -1.0 -2.2 hypothetical protein compare
Psest_3317 -1.0 -3.9 Phosphotransferase System HPr (HPr) Family compare
Psest_3884 -1.0 -1.1 Signal transduction histidine kinase compare
Psest_2285 -0.9 -2.9 ATP-dependent protease La compare
Psest_2240 -0.9 -1.6 hypothetical protein compare
Psest_2646 -0.9 -1.3 SOS regulatory protein LexA compare
Psest_0300 -0.9 -5.8 Methyl-accepting chemotaxis protein compare
Psest_3960 -0.9 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0951 -0.9 -5.2 FAD/FMN-containing dehydrogenases compare
Psest_4363 -0.9 -4.9 ATPases involved in chromosome partitioning compare
Psest_4163 -0.9 -2.2 hypothetical protein compare
Psest_2023 -0.9 -2.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3191 -0.9 -2.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3767 -0.9 -3.1 tyrosine recombinase XerC compare
Psest_3715 -0.9 -7.2 type IV pilus secretin (or competence protein) PilQ compare
Psest_3645 -0.9 -5.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3042 -0.9 -1.3 Nitrate reductase cytochrome c-type subunit compare
Psest_2714 -0.9 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_1679 -0.9 -1.6 ribonuclease, Rne/Rng family compare
Psest_3719 -0.9 -6.1 type IV pilus assembly protein PilM compare
Psest_2758 -0.9 -1.9 Predicted transcriptional regulators compare
Psest_3865 -0.9 -2.7 Predicted integral membrane protein (DUF2269). compare
Psest_1388 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1814 -0.9 -7.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4003 -0.8 -3.4 TIGR00153 family protein compare
Psest_0705 -0.8 -6.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3718 -0.8 -3.4 Tfp pilus assembly protein PilN compare
Psest_1870 -0.8 -0.8 Transcriptional regulators compare
Psest_0718 -0.8 -3.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_2744 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_1241 -0.8 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1765 -0.8 -4.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3991 -0.8 -1.7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_4345 -0.8 -4.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2863 -0.8 -3.7 Transcriptional regulator compare
Psest_2933 -0.8 -5.3 Signal transduction histidine kinase compare
Psest_3100 -0.8 -3.1 RNA polymerase sigma factor RpoE compare
Psest_4086 -0.8 -4.4 Transcriptional regulator compare
Psest_3287 -0.8 -3.8 Type II secretory pathway, component PulF compare
Psest_2757 -0.8 -1.1 hypothetical protein compare
Psest_3927 -0.8 -3.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4393 -0.8 -2.7 Capsule polysaccharide export protein compare
Psest_0133 -0.8 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_4364 -0.8 -2.6 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_4084 -0.8 -6.1 oxaloacetate decarboxylase alpha subunit compare
Psest_3962 -0.8 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1505 -0.8 -1.1 Organic radical activating enzymes compare
Psest_3389 -0.7 -2.0 hypothetical protein compare
Psest_3717 -0.7 -4.3 Tfp pilus assembly protein PilO compare
Psest_2809 -0.7 -2.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3391 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3988 -0.7 -3.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2743 -0.7 -2.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3031 -0.7 -0.8 hypothetical protein compare
Psest_3790 -0.7 -4.8 Cytochrome c5 compare
Psest_0707 -0.7 -3.0 MYND finger. compare
Psest_1905 -0.7 -2.5 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_4209 -0.7 -1.4 Uncharacterized conserved small protein compare
Psest_2810 -0.7 -2.6 5'/3'-nucleotidase SurE compare
Psest_3005 -0.7 -2.1 Fructose-2,6-bisphosphatase compare
Psest_0359 -0.7 -2.4 Transcriptional regulators compare
Psest_3228 -0.7 -4.9 Zn-dependent protease with chaperone function compare
Psest_2981 -0.7 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_0064 -0.7 -2.0 Transcriptional regulator compare
Psest_1510 -0.7 -2.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0998 -0.7 -2.0 poly(A) polymerase compare
Psest_0575 -0.7 -0.7 HrpA-like helicases compare
Psest_2864 -0.7 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2953 -0.7 -1.7 Histone acetyltransferase compare
Psest_0170 -0.7 -3.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_0193 -0.7 -0.6 conserved hypothetical protein compare
Psest_0024 -0.7 -4.3 LysM domain. compare
Psest_1813 -0.7 -4.7 pseudaminic acid biosynthesis-associated protein PseG compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in nitrogen source experiments

For nitrogen source L-Asparagine across organisms