Experiment set12H42 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_4078 +3.7 14.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1840 +2.3 20.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2136 +2.1 14.9 Predicted homoserine dehydrogenase compare
Psest_1122 +2.0 16.2 putative adhesin (DUF1302) (from data) compare
Psest_2066 +1.9 1.8 ABC-type uncharacterized transport system, permease component compare
Psest_0218 +1.8 5.9 Acyl-CoA hydrolase compare
Psest_1923 +1.8 7.7 adhesin-associated BNR repeat protein (from data) compare
Psest_1725 +1.8 11.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0538 +1.8 17.1 Signal transduction histidine kinase compare
Psest_1924 +1.7 15.0 adhesin-associated MmpL efflux pump (from data) compare
Psest_0487 +1.7 7.2 Uncharacterized protein conserved in bacteria compare
Psest_1635 +1.7 15.5 Signal transduction histidine kinase compare
Psest_0558 +1.6 1.7 urease, beta subunit compare
Psest_2260 +1.5 13.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3192 +1.5 9.6 diguanylate cyclase (GGDEF) domain compare
Psest_4076 +1.4 3.8 hypothetical protein compare
Psest_1306 +1.4 3.0 hypothetical protein compare
Psest_0309 +1.3 2.3 RND family efflux transporter, MFP subunit compare
Psest_2308 +1.3 2.3 Predicted Fe-S protein compare
Psest_1733 +1.2 3.2 flagellar biosynthetic protein FliQ compare
Psest_1625 +1.2 6.7 hypothetical protein compare
Psest_3816 +1.1 1.9 DNA-directed RNA polymerase, omega subunit compare
Psest_3100 +1.1 5.6 RNA polymerase sigma factor RpoE compare
Psest_1735 +1.1 5.9 flagellar biosynthetic protein FlhB compare
Psest_3129 +1.1 1.4 tyrosine recombinase XerD compare
Psest_1731 +1.1 2.7 flagellar biosynthetic protein FliO compare
Psest_3988 +1.1 5.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0312 +1.0 5.3 Superfamily II DNA and RNA helicases compare
Psest_1737 +1.0 3.7 flagellar biosynthesis protein FlhA compare
Psest_1602 +1.0 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1719 +1.0 5.5 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1721 +1.0 2.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1722 +1.0 7.7 flagellar protein export ATPase FliI compare
Psest_1720 +0.9 5.7 flagellar motor switch protein FliG compare
Psest_1227 +0.9 3.1 Predicted SAM-dependent methyltransferase compare
Psest_1734 +0.9 4.4 flagellar biosynthetic protein FliR compare
Psest_3850 +0.9 0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1354 +0.9 1.1 Uncharacterized protein conserved in bacteria compare
Psest_2248 +0.9 1.5 Predicted transcriptional regulators compare
Psest_1562 +0.9 2.4 Uncharacterized protein conserved in bacteria compare
Psest_1740 +0.9 4.9 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_0740 +0.9 1.8 Transcriptional regulator compare
Psest_2718 +0.9 1.6 hypothetical protein compare
Psest_0417 +0.9 2.4 Acyl-CoA dehydrogenases compare
Psest_1997 +0.9 1.4 6-phosphogluconolactonase compare
Psest_1728 +0.9 3.9 Flagellar basal body-associated protein compare
Psest_3005 +0.9 3.0 Fructose-2,6-bisphosphatase compare
Psest_0497 +0.9 5.3 Flagellar motor protein compare
Psest_1718 +0.8 3.8 flagellar hook-basal body complex protein FliE compare
Psest_1723 +0.8 3.3 flagellar export protein FliJ compare
Psest_3762 +0.8 3.1 iron donor protein CyaY compare
Psest_2585 +0.8 0.9 pseudouridylate synthase I compare
Psest_4273 +0.8 5.1 Lysophospholipase compare
Psest_0298 +0.8 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3142 +0.8 5.2 Uncharacterized protein conserved in bacteria compare
Psest_0243 +0.8 0.9 hypothetical protein compare
Psest_0083 +0.8 1.7 Uncharacterized conserved protein compare
Psest_4335 +0.8 1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1729 +0.8 3.9 flagellar motor switch protein FliM compare
Psest_0969 +0.8 1.9 transcription elongation factor GreA compare
Psest_0446 +0.8 3.3 hypothetical protein compare
Psest_3437 +0.7 2.7 diguanylate cyclase (GGDEF) domain compare
Psest_2965 +0.7 6.1 fagellar hook-basal body proteins compare
Psest_2786 +0.7 1.0 Domain of unknown function (DUF3597). compare
Psest_2671 +0.7 1.6 Transcriptional regulator compare
Psest_0094 +0.7 2.5 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2645 +0.7 3.9 Transcriptional regulator compare
Psest_0993 +0.7 5.3 Glucose-6-phosphate isomerase compare
Psest_3117 +0.7 2.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3732 +0.7 4.0 polyphosphate kinase 1 compare
Psest_0119 +0.7 1.4 hypothetical protein compare
Psest_2333 +0.7 0.7 Protein of unknown function (DUF3359). compare
Psest_4172 +0.7 2.4 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_3838 +0.7 1.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1749 +0.7 3.5 Chemotaxis signal transduction protein compare
Psest_4193 +0.7 4.1 Predicted signal transduction protein compare
Psest_3399 +0.7 0.9 Uncharacterized protein conserved in bacteria compare
Psest_2730 +0.7 2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3372 +0.7 4.3 Tfp pilus assembly protein PilW compare
Psest_3156 +0.7 2.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1854 +0.7 3.3 Domain of Unknown Function (DUF748). compare
Psest_1270 +0.7 3.2 hypothetical protein compare
Psest_1428 +0.7 1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1567 +0.7 1.9 Transcriptional regulator compare
Psest_0496 +0.7 3.8 flagellar motor stator protein MotA compare
Psest_4405 +0.6 1.3 hypothetical protein compare
Psest_2334 +0.6 4.8 Uncharacterized protein conserved in bacteria compare
Psest_1514 +0.6 2.6 Glycine cleavage system regulatory protein compare
Psest_3841 +0.6 4.0 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3700 +0.6 1.2 hypothetical protein compare
Psest_3115 +0.6 3.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0998 +0.6 1.7 poly(A) polymerase compare
Psest_3001 +0.6 1.5 molybdenum ABC transporter, ATP-binding protein compare
Psest_0194 +0.6 3.9 hypothetical protein compare
Psest_4338 +0.6 3.1 Fe2+-dicitrate sensor, membrane component compare
Psest_2070 +0.6 3.4 FOG: LysM repeat compare
Psest_3357 +0.6 2.1 Predicted pyrophosphatase compare
Psest_3092 +0.6 1.0 ribonuclease III, bacterial compare
Psest_2437 +0.6 2.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1631 +0.6 0.7 Uncharacterized conserved small protein compare
Psest_1946 +0.6 2.3 Protein of unknown function (DUF2835). compare
Psest_0105 +0.6 2.2 malonate decarboxylase, beta subunit compare
Psest_3206 +0.6 2.3 Uncharacterized protein conserved in bacteria compare
Psest_0078 +0.6 0.4 hypothetical protein compare
Psest_0089 +0.6 2.3 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_4102 +0.6 1.5 peroxiredoxin, Ohr subfamily compare
Psest_2958 +0.6 4.6 flagellar hook-associated protein 3 compare
Psest_3531 +0.6 1.0 Peptidase propeptide and YPEB domain. compare
Psest_0571 +0.6 3.0 Transcriptional regulators compare
Psest_1451 +0.6 1.9 Uncharacterized ABC-type transport system, permease components compare
Psest_2425 +0.6 1.4 Trk-type K+ transport systems, membrane components compare
Psest_2667 +0.6 1.6 Uncharacterized protein involved in propionate catabolism compare
Psest_0363 +0.6 2.3 tripartite ATP-independent periplasmic transporter solute receptor, DctP family compare
Psest_4403 +0.6 3.5 hypothetical protein compare
Psest_2253 +0.6 1.3 small redox-active disulfide protein 2 compare
Psest_0546 +0.6 2.9 hypothetical protein compare
Psest_2150 +0.6 1.3 DNA polymerase LigD, polymerase domain compare
Psest_2072 +0.6 3.1 Methyltransferase domain. compare
Psest_2976 +0.6 1.0 hypothetical protein compare
Psest_1510 +0.6 2.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1218 +0.6 1.8 Predicted endonuclease containing a URI domain compare
Psest_0708 +0.6 0.7 outer membrane assembly lipoprotein YfiO compare
Psest_3890 +0.5 0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3842 +0.5 1.2 Transcriptional regulators compare
Psest_1890 +0.5 3.6 Uncharacterized conserved protein compare
Psest_4303 +0.5 1.3 HEAT repeat. compare
Psest_1732 +0.5 1.7 flagellar biosynthetic protein FliP compare
Psest_0959 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_0521 +0.5 3.4 lytic murein transglycosylase compare
Psest_4149 +0.5 1.8 fagellar hook-basal body proteins compare
Psest_3637 +0.5 0.9 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_3148 +0.5 0.8 hypothetical protein compare
Psest_0511 +0.5 0.7 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0718 +0.5 2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_3433 +0.5 3.3 ATP-binding cassette protein, ChvD family compare
Psest_4241 +0.5 2.0 hypothetical protein compare
Psest_2312 +0.5 2.9 Small-conductance mechanosensitive channel compare
Psest_1691 +0.5 0.9 aminodeoxychorismate lyase compare
Psest_3965 +0.5 2.0 hypothetical protein compare
Psest_1322 +0.5 1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2988 +0.5 2.7 aspartate kinase, monofunctional class compare
Psest_2538 +0.5 1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3479 +0.5 2.2 molybdenum cofactor synthesis domain compare
Psest_1942 +0.5 3.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3008 +0.5 1.7 cobyric acid synthase CobQ compare
Psest_4056 +0.5 2.6 FMN reductase, SsuE family compare
Psest_3202 +0.5 1.5 Flavodoxins compare
Psest_4382 +0.5 4.5 hypothetical protein compare
Psest_1950 +0.5 3.9 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family compare
Psest_0355 +0.5 1.0 Glycine cleavage system regulatory protein compare
Psest_2959 +0.5 4.3 flagellar hook-associated protein FlgK compare
Psest_0490 +0.5 2.9 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1434 +0.5 2.0 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_3316 +0.5 2.6 Predicted P-loop-containing kinase compare
Psest_4126 +0.5 0.9 Predicted peroxiredoxins compare
Psest_3546 +0.5 0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3803 +0.5 0.5 DNA repair protein radc compare
Psest_2798 +0.5 1.2 Truncated hemoglobins compare
Psest_1565 +0.5 1.7 RND family efflux transporter, MFP subunit compare
Psest_1408 +0.5 1.8 Predicted unusual protein kinase compare
Psest_3370 +0.5 3.3 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1528 +0.5 1.9 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_0950 +0.5 1.7 hypothetical protein compare
Psest_4072 +0.5 3.8 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Psest_0476 +0.5 2.8 type I secretion outer membrane protein, TolC family compare
Psest_4276 +0.5 1.4 hypothetical protein compare
Psest_4140 +0.5 3.6 Acyl-CoA dehydrogenases compare
Psest_2525 +0.5 1.2 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_2183 +0.5 1.7 Transcriptional regulator compare
Psest_0108 +0.5 2.6 malonate decarboxylase, epsilon subunit compare
Psest_3518 +0.5 0.6 Transcriptional regulators compare
Psest_3470 +0.5 1.7 Uncharacterized conserved protein compare
Psest_4151 +0.5 1.2 Flagellar hook capping protein compare
Psest_3022 +0.5 1.9 Predicted membrane protein compare
Psest_1938 +0.5 2.5 hypothetical protein compare
Psest_2752 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
Psest_1458 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3962 +0.5 1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0805 +0.5 1.4 hypothetical protein compare
Psest_0851 +0.5 3.2 Transcriptional regulators compare
Psest_3112 +0.5 1.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3757 +0.5 2.1 TIGR02647 family protein compare
Psest_3006 +0.5 2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
Psest_2510 +0.5 2.9 chromosome segregation protein SMC, common bacterial type compare
Psest_1940 +0.5 1.4 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1932 +0.5 2.3 nitrite extrusion protein (nitrite facilitator) compare
Psest_2626 +0.5 1.7 Flp pilus assembly protein CpaB compare
Psest_3476 +0.5 0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3113 +0.5 1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2486 +0.5 2.3 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Psest_2911 +0.5 1.2 Protein of unknown function (DUF2945). compare
Psest_4079 +0.5 2.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2383 +0.5 3.1 Predicted transcriptional regulators compare
Psest_1491 +0.5 0.8 Cold shock proteins compare
Psest_0514 +0.5 2.1 lytic murein transglycosylase B compare
Psest_1167 +0.5 0.7 hypothetical protein compare
Psest_2555 +0.5 3.1 hypothetical protein compare
Psest_0466 +0.5 1.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1468 +0.5 1.4 hypothetical protein compare
Psest_1796 +0.5 1.7 Predicted NAD/FAD-dependent oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms