Experiment set12H41 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_4078 +4.1 5.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2066 +2.5 5.0 ABC-type uncharacterized transport system, permease component compare
Psest_1122 +2.2 15.3 putative adhesin (DUF1302) (from data) compare
Psest_2136 +2.2 7.7 Predicted homoserine dehydrogenase compare
Psest_1923 +2.2 5.0 adhesin-associated BNR repeat protein (from data) compare
Psest_1840 +2.1 9.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1725 +2.0 8.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0558 +2.0 1.4 urease, beta subunit compare
Psest_3937 +1.9 2.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0969 +1.9 3.3 transcription elongation factor GreA compare
Psest_2637 +1.8 1.7 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0487 +1.8 4.8 Uncharacterized protein conserved in bacteria compare
Psest_0538 +1.7 14.6 Signal transduction histidine kinase compare
Psest_0759 +1.7 2.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3092 +1.7 2.3 ribonuclease III, bacterial compare
Psest_1721 +1.6 1.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0066 +1.6 2.1 Protein of unknown function (DUF3060). compare
Psest_3129 +1.6 1.7 tyrosine recombinase XerD compare
Psest_1924 +1.6 10.4 adhesin-associated MmpL efflux pump (from data) compare
Psest_1082 +1.6 2.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1635 +1.6 8.3 Signal transduction histidine kinase compare
Psest_0237 +1.5 4.6 intracellular protease, PfpI family compare
Psest_1733 +1.5 2.6 flagellar biosynthetic protein FliQ compare
Psest_1167 +1.5 1.5 hypothetical protein compare
Psest_3100 +1.5 6.0 RNA polymerase sigma factor RpoE compare
Psest_0218 +1.5 4.3 Acyl-CoA hydrolase compare
Psest_2786 +1.5 1.2 Domain of unknown function (DUF3597). compare
Psest_1874 +1.4 4.2 AraC-type DNA-binding domain-containing proteins compare
Psest_1283 +1.4 4.3 Membrane proteins related to metalloendopeptidases compare
Psest_3192 +1.4 4.6 diguanylate cyclase (GGDEF) domain compare
Psest_3113 +1.4 2.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2260 +1.4 8.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0367 +1.4 2.2 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1663 +1.4 3.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2973 +1.4 6.3 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_4134 +1.3 2.3 Uncharacterized protein conserved in bacteria compare
Psest_1195 +1.3 2.7 xanthine permease compare
Psest_1567 +1.3 3.2 Transcriptional regulator compare
Psest_4201 +1.3 2.5 general secretion pathway protein F compare
Psest_1735 +1.3 5.8 flagellar biosynthetic protein FlhB compare
Psest_0799 +1.3 3.7 Uncharacterized protein involved in response to NO compare
Psest_3565 +1.3 1.3 hypothetical protein compare
Psest_4076 +1.3 3.3 hypothetical protein compare
Psest_0259 +1.3 0.8 cell division ATP-binding protein FtsE compare
Psest_3247 +1.3 1.8 Uncharacterized membrane protein compare
Psest_1728 +1.3 6.0 Flagellar basal body-associated protein compare
Psest_3115 +1.2 5.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2870 +1.2 4.4 TIGR00730 family protein compare
Psest_0988 +1.2 2.3 Protein of unknown function (DUF2845). compare
Psest_1999 +1.2 1.1 pseudouridine synthase compare
Psest_2764 +1.2 1.4 hypothetical protein compare
Psest_0725 +1.1 1.6 Negative regulator of beta-lactamase expression compare
Psest_0862 +1.1 2.7 Glycosidases compare
Psest_0737 +1.1 1.0 Cu(I)-responsive transcriptional regulator compare
Psest_2991 +1.1 3.2 hypothetical protein compare
Psest_0440 +1.1 1.3 hypothetical protein compare
Psest_4343 +1.1 1.9 Protein of unknown function (DUF3301). compare
Psest_0959 +1.1 1.2 Uncharacterized protein conserved in bacteria compare
Psest_0312 +1.1 4.0 Superfamily II DNA and RNA helicases compare
Psest_1729 +1.1 2.3 flagellar motor switch protein FliM compare
Psest_2643 +1.1 2.1 Beta-glucosidase-related glycosidases compare
Psest_0828 +1.1 2.9 Nitric oxide reductase activation protein compare
Psest_4273 +1.1 5.2 Lysophospholipase compare
Psest_0298 +1.0 3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1270 +1.0 2.5 hypothetical protein compare
Psest_0193 +1.0 0.6 conserved hypothetical protein compare
Psest_3478 +1.0 1.3 Cytochrome B561 compare
Psest_2020 +1.0 2.9 Uncharacterized protein involved in purine metabolism compare
Psest_1293 +1.0 1.0 VanZ like family. compare
Psest_2424 +1.0 0.9 K+ transport systems, NAD-binding component compare
Psest_1997 +1.0 1.4 6-phosphogluconolactonase compare
Psest_4106 +1.0 2.4 formate dehydrogenase, gamma subunit compare
Psest_0446 +1.0 3.3 hypothetical protein compare
Psest_2126 +1.0 2.1 Transcriptional regulators compare
Psest_0514 +1.0 4.2 lytic murein transglycosylase B compare
Psest_2581 +1.0 1.9 Uncharacterized protein conserved in bacteria compare
Psest_3080 +1.0 1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_3456 +1.0 1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_1562 +1.0 0.7 Uncharacterized protein conserved in bacteria compare
Psest_2864 +1.0 2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2906 +1.0 1.9 tRNA_Thr_CGT compare
Psest_1177 +1.0 2.0 pyruvate kinase compare
Psest_3554 +1.0 1.8 Uncharacterized protein conserved in bacteria compare
Psest_2976 +1.0 0.9 hypothetical protein compare
Psest_2944 +1.0 1.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2594 +1.0 1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2538 +1.0 1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2953 +1.0 1.5 Histone acetyltransferase compare
Psest_2628 +0.9 2.2 Flp pilus assembly protein, protease CpaA compare
Psest_3962 +0.9 1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1722 +0.9 3.3 flagellar protein export ATPase FliI compare
Psest_1431 +0.9 3.1 hypothetical protein compare
Psest_3881 +0.9 0.9 hypothetical protein compare
Psest_3331 +0.9 1.6 rare lipoprotein A compare
Psest_3151 +0.9 1.6 hypothetical protein compare
Psest_2023 +0.9 2.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1843 +0.9 1.8 Uncharacterized Fe-S protein compare
Psest_2622 +0.9 1.7 TadE-like protein. compare
Psest_3888 +0.9 4.1 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_0919 +0.9 1.2 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3732 +0.9 3.8 polyphosphate kinase 1 compare
Psest_3841 +0.9 3.9 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3824 +0.9 2.3 Predicted membrane protein compare
Psest_0697 +0.9 1.4 ribosomal protein L9 compare
Psest_2457 +0.9 2.2 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2645 +0.9 2.0 Transcriptional regulator compare
Psest_3479 +0.9 2.7 molybdenum cofactor synthesis domain compare
Psest_2958 +0.9 5.5 flagellar hook-associated protein 3 compare
Psest_0551 +0.9 3.0 PEP phosphonomutase and related enzymes compare
Psest_4132 +0.9 2.9 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_2736 +0.9 2.4 Transposase and inactivated derivatives compare
Psest_1907 +0.9 1.0 hypothetical protein compare
Psest_1660 +0.9 1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3988 +0.9 2.9 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0853 +0.9 1.6 6-phosphogluconolactonase compare
Psest_1632 +0.9 3.0 Predicted permeases compare
Psest_2775 +0.8 2.0 Glycerol-3-phosphate dehydrogenase compare
Psest_0684 +0.8 2.4 GTP-binding protein HflX compare
Psest_1921 +0.8 1.9 Protein of unknown function (DUF2797). compare
Psest_3447 +0.8 0.7 Uncharacterized MobA-related protein compare
Psest_2648 +0.8 1.5 hypothetical protein compare
Psest_1049 +0.8 1.4 Uncharacterized paraquat-inducible protein A compare
Psest_3476 +0.8 0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3087 +0.8 2.8 Transcriptional regulator compare
Psest_3936 +0.8 1.8 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2718 +0.8 0.7 hypothetical protein compare
Psest_2564 +0.8 3.0 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0785 +0.8 2.1 Thioredoxin reductase compare
Psest_3913 +0.8 1.0 hypothetical protein compare
Psest_1457 +0.8 1.0 FOG: Ankyrin repeat compare
Psest_2965 +0.8 5.4 fagellar hook-basal body proteins compare
Psest_4152 +0.8 2.2 flagellar basal-body rod protein FlgC compare
Psest_2955 +0.8 1.5 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_3850 +0.8 0.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1763 +0.8 1.8 hypothetical protein compare
Psest_3482 +0.8 1.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1942 +0.8 3.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2357 +0.8 1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_1524 +0.8 1.7 Sel1 repeat. compare
Psest_2383 +0.8 2.6 Predicted transcriptional regulators compare
Psest_0385 +0.8 1.3 Conserved secreted protein compare
Psest_4051 +0.8 1.1 molybdenum-pterin binding domain compare
Psest_3573 +0.8 1.4 dTDP-4-dehydrorhamnose reductase compare
Psest_3500 +0.8 1.7 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_4162 +0.8 3.1 Flagellar hook-length control protein compare
Psest_1720 +0.8 3.1 flagellar motor switch protein FliG compare
Psest_1398 +0.8 2.4 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2123 +0.8 1.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4382 +0.8 6.0 hypothetical protein compare
Psest_0233 +0.8 3.5 hypothetical protein compare
Psest_2988 +0.8 3.2 aspartate kinase, monofunctional class compare
Psest_2246 +0.8 1.8 arsenical resistance protein ArsH compare
Psest_1593 +0.8 2.6 hypothetical protein compare
Psest_4231 +0.8 2.6 Predicted alpha/beta hydrolase compare
Psest_0718 +0.8 2.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_1144 +0.7 1.2 AmpG-related permease compare
Psest_3142 +0.7 3.7 Uncharacterized protein conserved in bacteria compare
Psest_2887 +0.7 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4056 +0.7 1.8 FMN reductase, SsuE family compare
Psest_2216 +0.7 1.4 Acyl carrier protein compare
Psest_3508 +0.7 3.7 Putative intracellular protease/amidase compare
Psest_0190 +0.7 1.5 Uncharacterized conserved protein compare
Psest_3122 +0.7 1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4010 +0.7 0.7 peroxiredoxin, OsmC subfamily compare
Psest_0316 +0.7 0.9 Cytochrome c556 compare
Psest_0457 +0.7 1.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1227 +0.7 1.4 Predicted SAM-dependent methyltransferase compare
Psest_2176 +0.7 2.5 Predicted membrane protein compare
Psest_1157 +0.7 2.3 Predicted periplasmic lipoprotein compare
Psest_3145 +0.7 0.7 hypothetical protein compare
Psest_0031 +0.7 0.8 Uncharacterized conserved protein compare
Psest_3762 +0.7 2.1 iron donor protein CyaY compare
Psest_3117 +0.7 2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3357 +0.7 1.5 Predicted pyrophosphatase compare
Psest_2778 +0.7 1.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0088 +0.7 1.4 phosphonate metabolism protein PhnP compare
Psest_2510 +0.7 3.6 chromosome segregation protein SMC, common bacterial type compare
Psest_0006 +0.7 1.9 alkyl hydroperoxide reductase, F subunit compare
Psest_1939 +0.7 2.4 Tetratricopeptide repeat. compare
Psest_1796 +0.7 1.4 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_1155 +0.7 2.0 Methyl-accepting chemotaxis protein compare
Psest_1791 +0.7 1.9 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_2801 +0.7 1.7 hypothetical protein compare
Psest_1076 +0.7 1.9 acetyl-CoA acetyltransferases compare
Psest_1738 +0.7 2.4 flagellar biosynthetic protein FlhF compare
Psest_1910 +0.7 1.5 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_0814 +0.7 1.0 MoxR-like ATPases compare
Psest_1468 +0.7 1.0 hypothetical protein compare
Psest_1180 +0.7 2.0 hydroxypyruvate isomerase compare
Psest_2879 +0.7 1.7 Predicted deacetylase compare
Psest_1537 +0.7 3.0 Bacterioferritin-associated ferredoxin compare
Psest_0112 +0.7 2.3 Transcriptional regulator compare
Psest_0595 +0.7 1.6 Uncharacterized conserved protein compare
Psest_0145 +0.7 1.3 A/G-specific adenine glycosylase compare
Psest_1419 +0.7 1.7 Transcriptional regulator compare
Psest_4072 +0.7 4.2 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Psest_2729 +0.7 1.9 Signal transduction histidine kinase compare
Psest_2402 +0.7 3.0 Cyclopropane fatty acid synthase and related methyltransferases compare
Psest_2940 +0.7 0.8 Predicted membrane protein compare
Psest_1849 +0.7 1.3 Predicted glutamine amidotransferase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas stutzeri RCH2

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms