Experiment set12H4 for Pseudomonas stutzeri RCH2

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3648 -6.4 -6.3 anthranilate phosphoribosyltransferase compare
Psest_3721 -6.3 -7.6 Malic enzyme compare
Psest_2591 -6.3 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_0153 -6.1 -10.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0062 -6.1 -12.4 tryptophan synthase, alpha subunit compare
Psest_1473 -6.1 -4.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3866 -6.1 -16.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3944 -6.0 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2584 -6.0 -5.9 Phosphoribosylanthranilate isomerase compare
Psest_0508 -6.0 -10.0 gamma-glutamyl phosphate reductase compare
Psest_3647 -6.0 -8.2 Indole-3-glycerol phosphate synthase compare
Psest_3299 -5.9 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -5.8 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_3650 -5.8 -15.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2578 -5.7 -14.3 O-succinylhomoserine sulfhydrylase compare
Psest_0280 -5.5 -16.3 homoserine O-acetyltransferase compare
Psest_0155 -5.5 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0063 -5.5 -13.2 tryptophan synthase, beta subunit compare
Psest_3298 -5.3 -13.2 histidinol dehydrogenase compare
Psest_3384 -5.2 -11.1 glutamate 5-kinase compare
Psest_3864 -5.1 -16.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3998 -5.0 -3.5 glutamate--cysteine ligase compare
Psest_0325 -5.0 -13.8 Putative threonine efflux protein compare
Psest_3943 -5.0 -6.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0326 -5.0 -17.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0279 -4.9 -7.5 methionine biosynthesis protein MetW compare
Psest_0152 -4.9 -6.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0687 -4.8 -10.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3649 -4.8 -11.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2589 -4.7 -13.4 3-isopropylmalate dehydrogenase compare
Psest_0313 -4.4 -8.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2088 -4.3 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3818 -3.9 -9.4 endoribonuclease L-PSP, putative compare
Psest_1686 -3.8 -7.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1295 -3.7 -7.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.5 -2.4 amidophosphoribosyltransferase compare
Psest_2329 -3.4 -17.3 Transcriptional regulator compare
Psest_3297 -3.4 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3226 -3.0 -1.8 Predicted membrane protein compare
Psest_0327 -3.0 -4.8 Transcriptional regulator compare
Psest_2651 -2.7 -5.9 DNA topoisomerase I, bacterial compare
Psest_1772 -2.6 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3129 -2.5 -2.3 tyrosine recombinase XerD compare
Psest_2090 -2.5 -4.5 Protein of unknown function (DUF2970). compare
Psest_1037 -2.4 -3.6 acetolactate synthase, small subunit compare
Psest_0718 -2.4 -6.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_2333 -2.3 -1.6 Protein of unknown function (DUF3359). compare
Psest_3042 -2.3 -2.2 Nitrate reductase cytochrome c-type subunit compare
Psest_1013 -2.3 -2.2 phosphoribosylamine--glycine ligase compare
Psest_3351 -2.3 -6.2 peptide chain release factor 3 compare
Psest_0257 -2.3 -3.8 Predicted Zn-dependent peptidases compare
Psest_1474 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_0489 -2.1 -1.5 phosphoserine phosphatase SerB compare
Psest_1724 -2.1 -5.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1509 -2.1 -7.4 quinolinate synthetase complex, A subunit compare
Psest_2862 -2.1 -9.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3159 -1.9 -5.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3301 -1.9 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_1012 -1.9 -4.6 Signal transduction histidine kinase compare
Psest_0498 -1.9 -2.0 ribosome small subunit-dependent GTPase A compare
Psest_2327 -1.8 -8.0 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_2324 -1.8 -13.9 hypothetical protein compare
Psest_3843 -1.8 -6.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3810 -1.8 -1.2 orotate phosphoribosyltransferase compare
Psest_2863 -1.8 -5.5 Transcriptional regulator compare
Psest_2325 -1.8 -9.5 alpha-L-glutamate ligase-related protein compare
Psest_2323 -1.7 -11.4 Uncharacterized protein conserved in archaea compare
Psest_0284 -1.7 -11.1 pyridoxal phosphate enzyme, YggS family compare
Psest_4191 -1.7 -3.1 Transcriptional regulator compare
Psest_1277 -1.7 -10.0 2-isopropylmalate synthase, yeast type compare
Psest_0442 -1.6 -2.2 ATPases of the AAA+ class compare
Psest_4003 -1.6 -4.5 TIGR00153 family protein compare
Psest_3228 -1.6 -8.4 Zn-dependent protease with chaperone function compare
Psest_3322 -1.6 -12.5 TIGR02099 family protein compare
Psest_2104 -1.6 -2.1 IscR-regulated protein YhgI compare
Psest_3720 -1.6 -11.9 penicillin-binding protein, 1A family compare
Psest_3070 -1.5 -2.6 3-oxoadipyl-CoA thiolase compare
Psest_0445 -1.5 -9.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1510 -1.5 -3.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4044 -1.4 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2650 -1.4 -4.7 hypothetical protein compare
Psest_0485 -1.4 -2.8 clan AA aspartic protease, TIGR02281 family compare
Psest_3101 -1.4 -10.2 L-aspartate oxidase compare
Psest_0028 -1.4 -4.4 Coproporphyrinogen III oxidase compare
Psest_0193 -1.3 -1.3 conserved hypothetical protein compare
Psest_3988 -1.3 -6.2 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3339 -1.3 -5.5 Signal transduction histidine kinase compare
Psest_1292 -1.3 -7.0 monothiol glutaredoxin, Grx4 family compare
Psest_2714 -1.3 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_3146 -1.3 -2.2 hypothetical protein compare
Psest_2872 -1.3 -1.9 protein RecA compare
Psest_0417 -1.3 -2.6 Acyl-CoA dehydrogenases compare
Psest_0457 -1.3 -3.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0959 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3766 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0137 -1.3 -5.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3767 -1.3 -4.1 tyrosine recombinase XerC compare
Psest_3924 -1.2 -9.3 Na+/citrate symporter compare
Psest_1947 -1.2 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3803 -1.2 -1.7 DNA repair protein radc compare
Psest_2719 -1.2 -1.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0296 -1.2 -6.1 glutathione synthetase, prokaryotic compare
Psest_3860 -1.1 -1.9 Predicted permeases compare
Psest_3932 -1.1 -4.8 nitrogen regulation protein NR(I) compare
Psest_1313 -1.1 -1.4 Uncharacterized conserved small protein compare
Psest_1111 -1.1 -2.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1679 -1.1 -1.7 ribonuclease, Rne/Rng family compare
Psest_1636 -1.1 -3.4 putative transporter, required for glycine utilization (from data) compare
Psest_1516 -1.1 -2.4 Uncharacterized lipoprotein compare
Psest_4405 -1.0 -1.8 hypothetical protein compare
Psest_2538 -1.0 -1.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3458 -1.0 -2.6 hypothetical protein compare
Psest_1022 -1.0 -5.9 Thiol:disulfide interchange protein compare
Psest_0136 -1.0 -6.5 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0066 -1.0 -2.1 Protein of unknown function (DUF3060). compare
Psest_0212 -1.0 -1.7 exodeoxyribonuclease V, gamma subunit compare
Psest_2566 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3247 -0.9 -1.4 Uncharacterized membrane protein compare
Psest_0411 -0.9 -5.5 biotin synthetase compare
Psest_3338 -0.9 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0722 -0.9 -4.5 Predicted ATPase compare
Psest_1656 -0.9 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0575 -0.9 -1.0 HrpA-like helicases compare
Psest_1704 -0.9 -1.2 Dehydrogenases (flavoproteins) compare
Psest_2810 -0.9 -3.5 5'/3'-nucleotidase SurE compare
Psest_2850 -0.9 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1054 -0.9 -4.4 Diaminopimelate decarboxylase compare
Psest_2864 -0.9 -3.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3922 -0.9 -2.9 Response regulator of citrate/malate metabolism conserved
Psest_4043 -0.8 -2.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1879 -0.8 -2.2 Trk-type K+ transport systems, membrane components compare
Psest_0520 -0.8 -0.8 hypothetical protein compare
Psest_0652 -0.8 -2.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0097 -0.8 -1.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3270 -0.8 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2764 -0.8 -0.8 hypothetical protein compare
Psest_2809 -0.8 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1144 -0.8 -1.3 AmpG-related permease compare
Psest_3045 -0.8 -1.7 Cold shock proteins compare
Psest_1162 -0.8 -2.4 Spermidine synthase compare
Psest_3910 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3923 -0.8 -5.0 Signal transduction histidine kinase regulating citrate/malate metabolism compare
Psest_1468 -0.8 -2.7 hypothetical protein compare
Psest_3890 -0.8 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2791 -0.8 -2.9 hypothetical protein compare
Psest_0138 -0.8 -4.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2218 -0.7 -1.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_3963 -0.7 -5.0 PAS domain S-box compare
Psest_4243 -0.7 -1.7 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0660 -0.7 -2.1 Methyl-accepting chemotaxis protein compare
Psest_4341 -0.7 -2.1 hypothetical protein compare
Psest_2848 -0.7 -1.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_3447 -0.7 -1.4 Uncharacterized MobA-related protein compare
Psest_3960 -0.7 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1306 -0.7 -1.4 hypothetical protein compare
Psest_0693 -0.7 -6.5 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1677 -0.7 -1.2 Protein-tyrosine-phosphatase compare
Psest_1496 -0.7 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_2308 -0.7 -0.9 Predicted Fe-S protein compare
Psest_4363 -0.7 -4.0 ATPases involved in chromosome partitioning compare
Psest_2334 -0.7 -5.9 Uncharacterized protein conserved in bacteria compare
Psest_2532 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0115 -0.7 -1.0 Predicted integral membrane protein compare
Psest_1166 -0.7 -1.9 transcriptional regulator, ArgP family compare
Psest_0393 -0.7 -3.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2229 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2285 -0.7 -1.9 ATP-dependent protease La compare
Psest_3377 -0.7 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3536 -0.7 -1.2 hypothetical protein compare
Psest_4095 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3731 -0.7 -4.8 exopolyphosphatase compare
Psest_0814 -0.7 -1.1 MoxR-like ATPases compare
Psest_2646 -0.7 -2.0 SOS regulatory protein LexA compare
Psest_1486 -0.7 -1.8 hypothetical protein compare
Psest_1659 -0.7 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3931 -0.7 -2.4 Signal transduction histidine kinase, nitrogen specific compare
Psest_0297 -0.7 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0719 -0.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2901 -0.6 -0.8 hypothetical protein compare
Psest_3519 -0.6 -1.7 Uncharacterized conserved protein compare
Psest_2613 -0.6 -1.1 hypothetical protein compare
Psest_0095 -0.6 -2.7 phosphonate C-P lyase system protein PhnH compare
Psest_1179 -0.6 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_1699 -0.6 -2.2 Selenocysteine lyase compare
Psest_3008 -0.6 -2.0 cobyric acid synthase CobQ compare
Psest_0737 -0.6 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_0740 -0.6 -0.9 Transcriptional regulator compare
Psest_2748 -0.6 -1.4 Transcriptional regulator compare
Psest_4325 -0.6 -1.7 hypothetical protein compare
Psest_0306 -0.6 -4.6 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3882 -0.6 -3.8 Opacity protein and related surface antigens compare
Psest_0414 -0.6 -1.9 biotin biosynthesis protein BioC compare
Psest_3692 -0.6 -1.9 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3739 -0.6 -3.0 Small-conductance mechanosensitive channel compare
Psest_2346 -0.6 -2.4 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3449 -0.6 -0.9 DJ-1 family protein compare
Psest_1957 -0.6 -4.6 outer membrane porin, OprD family. compare
Psest_0154 -0.6 -1.8 Uncharacterized conserved protein compare
Psest_4097 -0.6 -4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4124 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas stutzeri RCH2

For carbon source L-Malic acid disodium salt monohydrate across organisms