Experiment set12H36 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_2260 +4.3 40.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +4.3 39.3 Signal transduction histidine kinase compare
Psest_4078 +4.2 10.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0298 +2.8 14.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3192 +2.7 19.0 diguanylate cyclase (GGDEF) domain compare
Psest_3286 +2.6 17.5 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_2586 +2.4 21.6 FimV N-terminal domain compare
Psest_4113 +2.3 6.9 hypothetical protein compare
Psest_1924 +2.3 20.9 adhesin-associated MmpL efflux pump (from data) compare
Psest_1731 +2.3 9.0 flagellar biosynthetic protein FliO compare
Psest_0496 +2.3 12.1 flagellar motor stator protein MotA compare
Psest_1122 +2.2 19.7 putative adhesin (DUF1302) (from data) compare
Psest_1923 +2.2 8.6 adhesin-associated BNR repeat protein (from data) compare
Psest_1718 +2.1 11.3 flagellar hook-basal body complex protein FliE compare
Psest_1737 +2.1 11.7 flagellar biosynthesis protein FlhA compare
Psest_0497 +2.1 13.2 Flagellar motor protein compare
Psest_1719 +2.1 12.7 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1735 +2.0 13.8 flagellar biosynthetic protein FlhB compare
Psest_4193 +2.0 13.7 Predicted signal transduction protein compare
Psest_1732 +2.0 8.6 flagellar biosynthetic protein FliP compare
Psest_0705 +2.0 15.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1625 +2.0 3.8 hypothetical protein compare
Psest_1733 +1.9 6.7 flagellar biosynthetic protein FliQ compare
Psest_1740 +1.9 11.9 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1729 +1.9 12.1 flagellar motor switch protein FliM compare
Psest_0302 +1.9 14.2 Chemotaxis protein histidine kinase and related kinases compare
Psest_1721 +1.9 7.2 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1722 +1.8 14.0 flagellar protein export ATPase FliI compare
Psest_0958 +1.8 12.0 Oligoketide cyclase/lipid transport protein compare
Psest_1734 +1.8 11.1 flagellar biosynthetic protein FliR compare
Psest_1725 +1.8 13.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0706 +1.8 11.9 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3113 +1.7 5.7 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1720 +1.7 12.0 flagellar motor switch protein FliG compare
Psest_3371 +1.7 11.1 type IV pilus modification protein PilV compare
Psest_0538 +1.7 16.3 Signal transduction histidine kinase compare
Psest_1840 +1.7 15.8 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_0301 +1.6 5.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3289 +1.6 10.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2072 +1.6 10.0 Methyltransferase domain. compare
Psest_1567 +1.6 7.2 Transcriptional regulator compare
Psest_2959 +1.6 12.6 flagellar hook-associated protein FlgK compare
Psest_3112 +1.5 6.5 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1123 +1.5 12.4 adhesin-associated sorting protein (DUF1329) (from data) compare
Psest_1723 +1.5 7.9 flagellar export protein FliJ compare
Psest_3372 +1.5 10.2 Tfp pilus assembly protein PilW compare
Psest_2958 +1.5 12.5 flagellar hook-associated protein 3 compare
Psest_2645 +1.5 9.1 Transcriptional regulator compare
Psest_2383 +1.4 10.8 Predicted transcriptional regulators compare
Psest_3900 +1.4 11.0 Spermidine/putrescine-binding periplasmic protein compare
Psest_2965 +1.4 12.2 fagellar hook-basal body proteins compare
Psest_0300 +1.4 10.3 Methyl-accepting chemotaxis protein compare
Psest_3370 +1.3 6.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3373 +1.3 6.1 Tfp pilus assembly protein PilX compare
Psest_2973 +1.3 8.0 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1728 +1.3 6.2 Flagellar basal body-associated protein compare
Psest_3115 +1.3 7.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3122 +1.3 6.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2017 +1.3 4.5 Predicted acyltransferase compare
Psest_1542 +1.2 6.9 Uncharacterized proteins, homologs of lactam utilization protein B conserved
Psest_3117 +1.2 4.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1540 +1.2 3.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_2001 +1.2 2.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0601 +1.2 4.8 hypothetical protein compare
Psest_2961 +1.2 3.9 Flagellar basal-body P-ring protein compare
Psest_1743 +1.1 6.9 Chemotaxis protein histidine kinase and related kinases compare
Psest_0181 +1.1 5.5 glycine cleavage system T protein compare
Psest_2531 +1.1 8.6 cytochrome c oxidase accessory protein FixG compare
Psest_1749 +1.1 6.8 Chemotaxis signal transduction protein compare
Psest_0487 +1.1 5.3 Uncharacterized protein conserved in bacteria compare
Psest_4241 +1.1 3.8 hypothetical protein compare
Psest_2964 +1.1 4.4 flagellar basal-body rod protein FlgF compare
Psest_2285 +1.0 3.8 ATP-dependent protease La compare
Psest_2899 +1.0 2.1 hypothetical protein compare
Psest_0105 +1.0 3.4 malonate decarboxylase, beta subunit compare
Psest_3399 +1.0 1.3 Uncharacterized protein conserved in bacteria compare
Psest_3433 +1.0 6.2 ATP-binding cassette protein, ChvD family compare
Psest_0558 +1.0 1.4 urease, beta subunit compare
Psest_0446 +1.0 4.3 hypothetical protein compare
Psest_4010 +1.0 1.5 peroxiredoxin, OsmC subfamily compare
Psest_3374 +1.0 7.3 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_3901 +1.0 7.9 diguanylate cyclase (GGDEF) domain compare
Psest_0312 +1.0 5.4 Superfamily II DNA and RNA helicases compare
Psest_1539 +0.9 6.1 Mn2+ and Fe2+ transporters of the NRAMP family compare
Psest_3064 +0.9 1.9 hypothetical protein compare
Psest_1541 +0.9 5.5 TIGR00370 family protein compare
Psest_2962 +0.9 6.3 Flagellar basal body L-ring protein compare
Psest_1518 +0.9 3.7 tRNA_Ser_CGA compare
Psest_0707 +0.9 5.2 MYND finger. compare
Psest_2122 +0.9 0.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1315 +0.9 2.7 hypothetical protein compare
Psest_2988 +0.9 4.4 aspartate kinase, monofunctional class compare
Psest_3496 +0.9 1.5 Predicted metal-binding protein compare
Psest_1444 +0.9 6.0 Curli production assembly/transport component CsgF. compare
Psest_1870 +0.9 1.2 Transcriptional regulators compare
Psest_2527 +0.9 5.4 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0740 +0.9 2.8 Transcriptional regulator compare
Psest_3913 +0.9 2.9 hypothetical protein compare
Psest_0050 +0.9 1.4 Predicted acetyltransferase compare
Psest_0708 +0.9 1.8 outer membrane assembly lipoprotein YfiO compare
Psest_2648 +0.9 2.3 hypothetical protein compare
Psest_0108 +0.9 4.4 malonate decarboxylase, epsilon subunit compare
Psest_3114 +0.9 5.3 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3843 +0.8 5.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2507 +0.8 6.7 Flagellin and related hook-associated proteins compare
Psest_2966 +0.8 4.8 Flagellar hook capping protein compare
Psest_3100 +0.8 3.6 RNA polymerase sigma factor RpoE compare
Psest_0299 +0.8 2.7 Chemotaxis signal transduction protein compare
Psest_2963 +0.8 5.1 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_2604 +0.8 3.5 WbqC-like protein family. compare
Psest_4103 +0.8 1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_0959 +0.8 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1643 +0.8 1.3 hypothetical protein compare
Psest_0956 +0.8 5.5 Transcriptional regulators compare
Psest_2786 +0.8 1.4 Domain of unknown function (DUF3597). compare
Psest_1445 +0.8 2.4 Curli assembly protein CsgE. compare
Psest_3447 +0.8 2.0 Uncharacterized MobA-related protein compare
Psest_2775 +0.8 2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_1574 +0.7 1.5 phenazine biosynthesis protein PhzF family compare
Psest_0867 +0.7 1.7 hypothetical protein compare
Psest_3979 +0.7 2.0 Fructose-2,6-bisphosphatase compare
Psest_1292 +0.7 5.1 monothiol glutaredoxin, Grx4 family compare
Psest_1744 +0.7 4.0 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_0476 +0.7 4.5 type I secretion outer membrane protein, TolC family compare
Psest_3841 +0.7 4.1 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3546 +0.7 1.2 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2025 +0.7 1.2 cold shock domain protein CspD compare
Psest_0532 +0.7 4.0 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_1741 +0.7 1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1443 +0.7 3.9 Uncharacterized protein involved in formation of curli polymers compare
Psest_0218 +0.7 1.9 Acyl-CoA hydrolase compare
Psest_3938 +0.7 2.3 Uncharacterized protein conserved in bacteria compare
Psest_3518 +0.7 1.4 Transcriptional regulators compare
Psest_3790 +0.7 4.4 Cytochrome c5 compare
Psest_1314 +0.7 5.6 Putative Zn-dependent protease compare
Psest_0243 +0.7 1.6 hypothetical protein compare
Psest_2594 +0.7 2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3828 +0.7 0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_1124 +0.7 5.9 ATP-dependent transcriptional regulator compare
Psest_0094 +0.7 2.5 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1316 +0.7 5.1 Predicted transmembrane sensor domain compare
Psest_1215 +0.7 1.9 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2596 +0.6 3.8 hypothetical protein compare
Psest_3659 +0.6 2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3775 +0.6 2.3 Mg chelatase-related protein compare
Psest_0355 +0.6 1.2 Glycine cleavage system regulatory protein compare
Psest_3270 +0.6 1.8 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1543 +0.6 3.7 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_1738 +0.6 2.7 flagellar biosynthetic protein FlhF compare
Psest_3449 +0.6 0.8 DJ-1 family protein compare
Psest_2647 +0.6 1.6 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_2603 +0.6 4.2 capsular exopolysaccharide family compare
Psest_1818 +0.6 4.6 GDP-mannose 4,6-dehydratase compare
Psest_0684 +0.6 1.9 GTP-binding protein HflX compare
Psest_2587 +0.6 2.0 Aspartate-semialdehyde dehydrogenase compare
Psest_3664 +0.6 1.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3670 +0.6 4.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3339 +0.6 2.2 Signal transduction histidine kinase compare
Psest_2070 +0.6 3.5 FOG: LysM repeat compare
Psest_2971 +0.6 3.2 flagella basal body P-ring formation protein FlgA compare
Psest_2600 +0.6 3.9 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Psest_0737 +0.6 0.8 Cu(I)-responsive transcriptional regulator compare
Psest_1531 +0.6 4.2 hypothetical protein compare
Psest_1238 +0.6 2.9 Predicted membrane protein/domain compare
Psest_2565 +0.6 2.1 Transcriptional regulator compare
Psest_1821 +0.6 4.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1666 +0.6 2.6 PilZ domain. compare
Psest_3148 +0.6 1.0 hypothetical protein compare
Psest_3063 +0.6 1.8 hypothetical protein compare
Psest_2646 +0.6 1.7 SOS regulatory protein LexA compare
Psest_1498 +0.6 1.9 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2399 +0.5 3.2 Short-chain dehydrogenases of various substrate specificities compare
Psest_0115 +0.5 1.1 Predicted integral membrane protein compare
Psest_2066 +0.5 1.0 ABC-type uncharacterized transport system, permease component compare
Psest_1566 +0.5 3.7 Cation/multidrug efflux pump compare
Psest_4076 +0.5 1.3 hypothetical protein compare
Psest_2960 +0.5 3.2 flagellar rod assembly protein/muramidase FlgJ compare
Psest_1456 +0.5 1.6 Protein of unknown function (DUF2892). compare
Psest_3750 +0.5 2.9 Predicted signal transduction protein with a C-terminal ATPase domain compare
Psest_3669 +0.5 2.2 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Psest_2561 +0.5 0.8 hypothetical protein compare
Psest_0032 +0.5 4.2 D-alanyl-D-alanine carboxypeptidase compare
Psest_4364 +0.5 2.0 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_0378 +0.5 2.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_0144 +0.5 3.0 Fe-S cluster protector protein compare
Psest_1752 +0.5 1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3191 +0.5 1.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0988 +0.5 1.1 Protein of unknown function (DUF2845). compare
Psest_2976 +0.5 0.6 hypothetical protein compare
Psest_4128 +0.5 1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3745 +0.5 1.8 Uncharacterized enzyme of heme biosynthesis compare
Psest_0106 +0.5 2.1 malonate decarboxylase, gamma subunit compare
Psest_2505 +0.5 4.0 Flagellar capping protein compare
Psest_2429 +0.5 2.5 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1530 +0.5 2.5 Predicted membrane protein compare
Psest_2136 +0.5 3.7 Predicted homoserine dehydrogenase compare
Psest_3434 +0.5 4.4 Serine phosphatase RsbU, regulator of sigma subunit compare
Psest_2000 +0.5 1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0142 +0.5 4.1 Micrococcal nuclease (thermonuclease) homologs compare
Psest_1457 +0.5 1.3 FOG: Ankyrin repeat compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Glutamine in Pseudomonas stutzeri RCH2

For carbon source L-Glutamine across organisms