Experiment set12H28 for Pseudomonas stutzeri RCH2

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3648 -6.4 -4.4 anthranilate phosphoribosyltransferase compare
Psest_3647 -6.3 -6.1 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.0 -9.2 gamma-glutamyl phosphate reductase compare
Psest_2578 -6.0 -10.0 O-succinylhomoserine sulfhydrylase compare
Psest_0279 -5.9 -7.0 methionine biosynthesis protein MetW compare
Psest_2591 -5.8 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_0155 -5.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0280 -5.6 -14.1 homoserine O-acetyltransferase compare
Psest_3650 -5.6 -13.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0062 -5.6 -13.0 tryptophan synthase, alpha subunit compare
Psest_0153 -5.6 -11.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -5.5 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psest_3298 -5.5 -10.5 histidinol dehydrogenase compare
Psest_3866 -5.4 -17.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2584 -5.4 -5.3 Phosphoribosylanthranilate isomerase compare
Psest_0063 -5.4 -11.0 tryptophan synthase, beta subunit compare
Psest_0419 -5.3 -25.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
Psest_3299 -5.3 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3384 -5.3 -8.8 glutamate 5-kinase compare
Psest_1765 -5.1 -10.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0152 -4.8 -5.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_3864 -4.8 -16.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0325 -4.6 -13.5 Putative threonine efflux protein compare
Psest_1567 -4.4 -7.9 Transcriptional regulator compare
Psest_0313 -4.4 -7.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1640 -4.3 -16.8 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3943 -4.3 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0170 -4.1 -9.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1724 -4.1 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0297 -4.1 -6.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2589 -4.1 -11.3 3-isopropylmalate dehydrogenase compare
Psest_2014 -4.1 -5.5 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_1772 -4.0 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3806 -4.0 -10.0 Phosphomannomutase compare
Psest_3288 -3.9 -18.1 type IV-A pilus assembly ATPase PilB compare
Psest_1037 -3.8 -4.6 acetolactate synthase, small subunit compare
Psest_0326 -3.8 -11.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1473 -3.8 -7.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1163 -3.8 -6.3 diguanylate cyclase (GGDEF) domain compare
Psest_3809 -3.8 -7.6 hypothetical protein compare
Psest_0193 -3.7 -2.1 conserved hypothetical protein compare
Psest_3944 -3.7 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1295 -3.7 -5.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1012 -3.7 -3.6 Signal transduction histidine kinase compare
Psest_4298 -3.4 -2.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0300 -3.4 -7.9 Methyl-accepting chemotaxis protein compare
Psest_0491 -3.4 -12.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3717 -3.4 -9.3 Tfp pilus assembly protein PilO compare
Psest_3286 -3.3 -9.2 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3716 -3.3 -12.9 Tfp pilus assembly protein PilP compare
Psest_4005 -3.3 -8.3 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1260 -3.3 -6.6 type IV pilus biogenesis/stability protein PilW compare
Psest_1695 -3.3 -5.9 Tfp pilus assembly protein PilZ compare
Psest_3718 -3.2 -7.8 Tfp pilus assembly protein PilN compare
Psest_3375 -3.2 -11.7 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0393 -3.2 -12.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1139 -3.2 -7.1 PAS domain S-box compare
Psest_0687 -3.1 -5.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3715 -3.1 -18.1 type IV pilus secretin (or competence protein) PilQ compare
Psest_0706 -3.1 -12.3 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1853 -3.0 -12.6 MoxR-like ATPases compare
Psest_2579 -3.0 -2.9 amidophosphoribosyltransferase compare
Psest_4097 -2.9 -13.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2586 -2.8 -21.4 FimV N-terminal domain compare
Psest_3287 -2.8 -5.3 Type II secretory pathway, component PulF compare
Psest_0705 -2.8 -14.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0285 -2.7 -9.9 pilus retraction protein PilT compare
Psest_2027 -2.7 -13.3 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3719 -2.7 -12.8 type IV pilus assembly protein PilM compare
Psest_0024 -2.6 -11.2 LysM domain. compare
Psest_1814 -2.5 -17.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3458 -2.5 -4.3 hypothetical protein compare
Psest_3289 -2.5 -11.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1851 -2.3 -9.5 Uncharacterized protein conserved in bacteria conserved
Psest_3960 -2.3 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0327 -2.3 -3.8 Transcriptional regulator compare
Psest_3926 -2.3 -12.6 GTP-binding protein TypA/BipA compare
Psest_4078 -2.2 -3.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0359 -2.1 -3.0 Transcriptional regulators compare
Psest_3400 -2.1 -2.4 Copper resistance protein D. compare
Psest_1813 -2.1 -10.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0296 -2.1 -9.3 glutathione synthetase, prokaryotic compare
Psest_3377 -2.0 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0999 -1.9 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2324 -1.8 -14.2 hypothetical protein compare
Psest_2323 -1.8 -12.2 Uncharacterized protein conserved in archaea compare
Psest_0498 -1.8 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_3351 -1.8 -5.1 peptide chain release factor 3 compare
Psest_3180 -1.8 -9.1 Exonuclease I compare
Psest_1704 -1.7 -1.2 Dehydrogenases (flavoproteins) compare
Psest_0445 -1.7 -11.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0489 -1.7 -1.2 phosphoserine phosphatase SerB compare
Psest_1474 -1.7 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_3306 -1.7 -5.1 conserved hypothetical integral membrane protein compare
Psest_3322 -1.7 -13.0 TIGR02099 family protein compare
Psest_1013 -1.6 -1.9 phosphoribosylamine--glycine ligase compare
Psest_2333 -1.6 -1.5 Protein of unknown function (DUF3359). compare
Psest_2325 -1.6 -8.9 alpha-L-glutamate ligase-related protein compare
Psest_1703 -1.6 -7.0 Uncharacterized protein conserved in bacteria conserved
Psest_3998 -1.6 -7.0 glutamate--cysteine ligase compare
Psest_4345 -1.6 -6.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2025 -1.6 -1.5 cold shock domain protein CspD compare
Psest_0442 -1.5 -1.5 ATPases of the AAA+ class compare
Psest_1008 -1.5 -1.8 hypothetical protein compare
Psest_3129 -1.5 -1.5 tyrosine recombinase XerD compare
Psest_2967 -1.5 -4.0 flagellar basal-body rod protein FlgC compare
Psest_0845 -1.5 -1.6 hypothetical protein compare
Psest_0722 -1.5 -6.4 Predicted ATPase compare
Psest_3304 -1.5 -5.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0248 -1.5 -2.9 Transcriptional regulator compare
Psest_0707 -1.5 -7.0 MYND finger. compare
Psest_3159 -1.4 -5.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3419 -1.4 -6.1 Predicted transcriptional regulators compare
Psest_3721 -1.4 -6.3 Malic enzyme compare
Psest_0697 -1.4 -2.4 ribosomal protein L9 compare
Psest_1505 -1.4 -2.2 Organic radical activating enzymes compare
Psest_2312 -1.4 -7.5 Small-conductance mechanosensitive channel compare
Psest_1679 -1.3 -2.4 ribonuclease, Rne/Rng family compare
Psest_2285 -1.3 -3.1 ATP-dependent protease La compare
Psest_0218 -1.3 -2.6 Acyl-CoA hydrolase compare
Psest_1506 -1.2 -5.4 queuosine biosynthesis protein QueC compare
Psest_4363 -1.2 -5.2 ATPases involved in chromosome partitioning compare
Psest_3732 -1.2 -6.1 polyphosphate kinase 1 compare
Psest_1989 -1.2 -5.7 Transcriptional regulators compare
Psest_0257 -1.2 -2.1 Predicted Zn-dependent peptidases compare
Psest_2968 -1.2 -5.9 flagellar basal-body rod protein FlgB compare
Psest_0298 -1.1 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3810 -1.1 -1.1 orotate phosphoribosyltransferase compare
Psest_2566 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1076 -1.1 -5.2 acetyl-CoA acetyltransferases compare
Psest_3303 -1.1 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2864 -1.1 -3.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1812 -1.1 -5.6 pseudaminic acid CMP-transferase compare
Psest_1075 -1.1 -4.4 Predicted transcriptional regulators compare
Psest_2067 -1.1 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0354 -1.0 -6.8 Malate synthase G (EC 2.3.3.9) (from data) compare
Psest_4243 -1.0 -1.9 type VI secretion lipoprotein, VC_A0113 family compare
Psest_4287 -1.0 -3.7 Predicted glutamine amidotransferases compare
Psest_0725 -1.0 -1.4 Negative regulator of beta-lactamase expression compare
Psest_2971 -1.0 -5.8 flagella basal body P-ring formation protein FlgA compare
Psest_2504 -1.0 -4.7 flagellar biosynthetic protein FliS compare
Psest_2278 -1.0 -2.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_4297 -1.0 -6.3 PAS domain S-box compare
Psest_1242 -1.0 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0262 -1.0 -8.4 PAS domain S-box compare
Psest_3047 -1.0 -1.4 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0718 -1.0 -3.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_1167 -0.9 -1.1 hypothetical protein compare
Psest_0030 -0.9 -2.9 Putative NADH-flavin reductase compare
Psest_3555 -0.9 -3.8 Predicted methyltransferase compare
Psest_2712 -0.9 -2.9 Surface lipoprotein compare
Psest_3476 -0.9 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0334 -0.9 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0691 -0.9 -6.7 ribonuclease R compare
Psest_3187 -0.9 -4.0 hypothetical protein compare
Psest_4084 -0.9 -6.5 oxaloacetate decarboxylase alpha subunit compare
Psest_2648 -0.9 -2.0 hypothetical protein compare
Psest_3338 -0.9 -1.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2933 -0.9 -5.3 Signal transduction histidine kinase compare
Psest_3766 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3838 -0.9 -1.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2718 -0.9 -0.9 hypothetical protein compare
Psest_4098 -0.9 -2.3 Superfamily I DNA and RNA helicases compare
Psest_4103 -0.9 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_1082 -0.8 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3537 -0.8 -3.2 hypothetical protein compare
Psest_1509 -0.8 -4.7 quinolinate synthetase complex, A subunit compare
Psest_0520 -0.8 -0.9 hypothetical protein compare
Psest_2460 -0.8 -2.1 hypothetical protein compare
Psest_0302 -0.8 -5.3 Chemotaxis protein histidine kinase and related kinases compare
Psest_1527 -0.8 -6.6 Na+/proline symporter compare
Psest_4191 -0.8 -2.1 Transcriptional regulator compare
Psest_3123 -0.8 -1.1 dihydroorotase, homodimeric type compare
Psest_3573 -0.8 -2.6 dTDP-4-dehydrorhamnose reductase compare
Psest_3305 -0.8 -4.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4178 -0.8 -2.1 hypothetical protein compare
Psest_2940 -0.8 -2.5 Predicted membrane protein compare
Psest_2714 -0.8 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_2308 -0.8 -1.1 Predicted Fe-S protein compare
Psest_2809 -0.8 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1103 -0.8 -1.9 GTP-binding protein YchF compare
Psest_0086 -0.7 -2.0 hypothetical protein compare
Psest_1496 -0.7 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0759 -0.7 -1.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1463 -0.7 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0347 -0.7 -6.0 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_2845 -0.7 -4.5 [Protein-PII] uridylyltransferase compare
Psest_3185 -0.7 -1.8 MoxR-like ATPases compare
Psest_1486 -0.7 -1.6 hypothetical protein compare
Psest_3532 -0.7 -3.2 Peptidase propeptide and YPEB domain. compare
Psest_1818 -0.7 -5.3 GDP-mannose 4,6-dehydratase compare
Psest_4044 -0.7 -1.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2507 -0.7 -5.4 Flagellin and related hook-associated proteins compare
Psest_2719 -0.7 -0.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2911 -0.7 -1.4 Protein of unknown function (DUF2945). compare
Psest_3226 -0.7 -0.9 Predicted membrane protein compare
Psest_0349 -0.7 -3.3 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_1241 -0.7 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0575 -0.7 -0.9 HrpA-like helicases compare
Psest_1144 -0.7 -0.7 AmpG-related permease compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas stutzeri RCH2

For carbon source Sodium butyrate across organisms