Experiment set12H27 for Pseudomonas stutzeri RCH2

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -6.4 -4.4 methionine biosynthesis protein MetW compare
Psest_2578 -6.2 -7.3 O-succinylhomoserine sulfhydrylase compare
Psest_3647 -6.1 -5.9 Indole-3-glycerol phosphate synthase compare
Psest_0153 -6.0 -8.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3866 -5.9 -14.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1037 -5.7 -4.0 acetolactate synthase, small subunit compare
Psest_3650 -5.6 -12.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2591 -5.6 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_3864 -5.5 -12.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3648 -5.5 -7.5 anthranilate phosphoribosyltransferase compare
Psest_3299 -5.4 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -5.4 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_0062 -5.3 -12.4 tryptophan synthase, alpha subunit compare
Psest_3384 -5.3 -8.1 glutamate 5-kinase compare
Psest_0419 -5.3 -25.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
Psest_1765 -5.2 -10.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0155 -5.2 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0280 -5.1 -14.4 homoserine O-acetyltransferase compare
Psest_0508 -5.1 -9.8 gamma-glutamyl phosphate reductase compare
Psest_0063 -5.1 -10.9 tryptophan synthase, beta subunit compare
Psest_0152 -5.1 -7.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3943 -5.1 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2584 -5.0 -6.9 Phosphoribosylanthranilate isomerase compare
Psest_1567 -4.8 -6.4 Transcriptional regulator compare
Psest_3298 -4.8 -12.0 histidinol dehydrogenase compare
Psest_0170 -4.8 -8.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_0325 -4.7 -12.2 Putative threonine efflux protein compare
Psest_1163 -4.6 -4.5 diguanylate cyclase (GGDEF) domain compare
Psest_2014 -4.6 -8.6 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_0313 -4.6 -5.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1724 -4.5 -5.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3944 -4.3 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1640 -4.1 -14.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1772 -4.0 -4.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0326 -4.0 -13.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2589 -3.9 -11.8 3-isopropylmalate dehydrogenase compare
Psest_0300 -3.9 -10.0 Methyl-accepting chemotaxis protein compare
Psest_0297 -3.8 -5.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3288 -3.8 -16.6 type IV-A pilus assembly ATPase PilB compare
Psest_3375 -3.8 -11.2 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3806 -3.7 -11.8 Phosphomannomutase compare
Psest_1695 -3.7 -5.0 Tfp pilus assembly protein PilZ compare
Psest_1139 -3.7 -6.1 PAS domain S-box compare
Psest_0491 -3.6 -12.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1473 -3.6 -8.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3717 -3.6 -9.6 Tfp pilus assembly protein PilO compare
Psest_3809 -3.6 -6.9 hypothetical protein compare
Psest_1012 -3.5 -3.4 Signal transduction histidine kinase compare
Psest_1295 -3.5 -5.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0024 -3.3 -14.0 LysM domain. compare
Psest_4298 -3.3 -1.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4005 -3.2 -8.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3715 -3.2 -19.7 type IV pilus secretin (or competence protein) PilQ compare
Psest_3286 -3.1 -7.9 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0705 -3.1 -14.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3458 -3.0 -5.0 hypothetical protein compare
Psest_2586 -2.9 -20.3 FimV N-terminal domain compare
Psest_3716 -2.9 -12.9 Tfp pilus assembly protein PilP compare
Psest_0687 -2.9 -4.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0285 -2.9 -9.9 pilus retraction protein PilT compare
Psest_2579 -2.8 -2.7 amidophosphoribosyltransferase compare
Psest_1851 -2.8 -11.1 Uncharacterized protein conserved in bacteria conserved
Psest_3719 -2.8 -12.6 type IV pilus assembly protein PilM compare
Psest_0706 -2.7 -12.4 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1853 -2.6 -8.1 MoxR-like ATPases compare
Psest_0393 -2.5 -7.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1260 -2.5 -7.5 type IV pilus biogenesis/stability protein PilW compare
Psest_4097 -2.5 -12.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2027 -2.5 -11.2 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3718 -2.5 -5.1 Tfp pilus assembly protein PilN compare
Psest_2714 -2.5 -2.9 7-cyano-7-deazaguanine reductase compare
Psest_1679 -2.4 -2.2 ribonuclease, Rne/Rng family compare
Psest_3926 -2.4 -10.6 GTP-binding protein TypA/BipA compare
Psest_0327 -2.4 -3.7 Transcriptional regulator compare
Psest_4078 -2.3 -3.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3850 -2.3 -1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3289 -2.3 -10.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0248 -2.2 -5.5 Transcriptional regulator compare
Psest_2324 -2.1 -14.0 hypothetical protein compare
Psest_1814 -2.1 -14.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3287 -2.1 -3.9 Type II secretory pathway, component PulF compare
Psest_0520 -2.1 -1.4 hypothetical protein compare
Psest_1813 -2.0 -11.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1013 -1.9 -1.3 phosphoribosylamine--glycine ligase compare
Psest_0296 -1.8 -7.9 glutathione synthetase, prokaryotic compare
Psest_2325 -1.8 -9.2 alpha-L-glutamate ligase-related protein compare
Psest_2323 -1.7 -11.2 Uncharacterized protein conserved in archaea compare
Psest_1986 -1.7 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2967 -1.7 -3.4 flagellar basal-body rod protein FlgC compare
Psest_2312 -1.6 -9.0 Small-conductance mechanosensitive channel compare
Psest_1474 -1.6 -1.1 phosphoribosylaminoimidazole synthetase compare
Psest_0445 -1.6 -10.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1703 -1.6 -6.4 Uncharacterized protein conserved in bacteria conserved
Psest_0489 -1.6 -1.1 phosphoserine phosphatase SerB compare
Psest_3180 -1.6 -8.3 Exonuclease I compare
Psest_3910 -1.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1704 -1.6 -1.1 Dehydrogenases (flavoproteins) compare
Psest_4345 -1.5 -7.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3721 -1.5 -7.6 Malic enzyme compare
Psest_0740 -1.5 -3.1 Transcriptional regulator compare
Psest_3322 -1.5 -11.8 TIGR02099 family protein compare
Psest_3226 -1.5 -1.3 Predicted membrane protein compare
Psest_0722 -1.4 -6.2 Predicted ATPase compare
Psest_0359 -1.4 -3.2 Transcriptional regulators compare
Psest_3159 -1.4 -5.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1989 -1.4 -5.6 Transcriptional regulators compare
Psest_0442 -1.4 -1.3 ATPases of the AAA+ class compare
Psest_2864 -1.3 -3.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3810 -1.3 -0.9 orotate phosphoribosyltransferase compare
Psest_0725 -1.3 -2.0 Negative regulator of beta-lactamase expression compare
Psest_2277 -1.3 -3.9 coenzyme PQQ biosynthesis protein A compare
Psest_1505 -1.3 -2.0 Organic radical activating enzymes compare
Psest_1509 -1.3 -5.1 quinolinate synthetase complex, A subunit compare
Psest_3555 -1.3 -2.6 Predicted methyltransferase compare
Psest_1215 -1.3 -2.8 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2968 -1.3 -6.6 flagellar basal-body rod protein FlgB compare
Psest_0212 -1.2 -2.3 exodeoxyribonuclease V, gamma subunit compare
Psest_2971 -1.2 -5.7 flagella basal body P-ring formation protein FlgA compare
Psest_1741 -1.2 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0218 -1.2 -3.4 Acyl-CoA hydrolase compare
Psest_4363 -1.2 -5.5 ATPases involved in chromosome partitioning compare
Psest_1076 -1.2 -3.6 acetyl-CoA acetyltransferases compare
Psest_0697 -1.2 -2.3 ribosomal protein L9 compare
Psest_3187 -1.2 -3.9 hypothetical protein compare
Psest_2744 -1.2 -1.7 Uncharacterized conserved protein compare
Psest_2766 -1.2 -1.2 hypothetical protein compare
Psest_3351 -1.2 -3.9 peptide chain release factor 3 compare
Psest_2278 -1.2 -1.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2946 -1.1 -2.1 septum site-determining protein MinD compare
Psest_0349 -1.1 -5.0 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_3998 -1.1 -5.4 glutamate--cysteine ligase compare
Psest_4297 -1.1 -5.8 PAS domain S-box compare
Psest_0262 -1.1 -9.9 PAS domain S-box compare
Psest_0193 -1.1 -0.7 conserved hypothetical protein compare
Psest_0998 -1.1 -1.7 poly(A) polymerase compare
Psest_1421 -1.1 -2.3 Glutathione S-transferase compare
Psest_0707 -1.1 -4.0 MYND finger. compare
Psest_3732 -1.1 -5.4 polyphosphate kinase 1 compare
Psest_3419 -1.1 -4.7 Predicted transcriptional regulators compare
Psest_2067 -1.0 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2411 -1.0 -5.9 PAS domain S-box compare
Psest_2001 -1.0 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0346 -1.0 -2.1 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_4287 -1.0 -4.1 Predicted glutamine amidotransferases compare
Psest_2712 -1.0 -2.7 Surface lipoprotein compare
Psest_1699 -1.0 -3.0 Selenocysteine lyase compare
Psest_4141 -1.0 -3.9 3-carboxymuconate cyclase compare
Psest_0141 -1.0 -2.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3338 -0.9 -1.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0298 -0.9 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2933 -0.9 -5.8 Signal transduction histidine kinase compare
Psest_3145 -0.9 -1.5 hypothetical protein compare
Psest_0354 -0.9 -5.8 Malate synthase G (EC 2.3.3.9) (from data) compare
Psest_1167 -0.9 -1.0 hypothetical protein compare
Psest_3377 -0.9 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3838 -0.9 -2.3 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1812 -0.9 -5.3 pseudaminic acid CMP-transferase compare
Psest_2648 -0.9 -1.6 hypothetical protein compare
Psest_0691 -0.9 -6.1 ribonuclease R compare
Psest_4126 -0.9 -1.9 Predicted peroxiredoxins compare
Psest_3123 -0.9 -1.1 dihydroorotase, homodimeric type compare
Psest_3305 -0.9 -4.3 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3532 -0.9 -5.2 Peptidase propeptide and YPEB domain. compare
Psest_0347 -0.8 -6.4 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_0999 -0.8 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3204 -0.8 -4.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0575 -0.8 -0.9 HrpA-like helicases compare
Psest_3060 -0.8 -2.5 hypothetical protein compare
Psest_3550 -0.8 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0302 -0.8 -5.0 Chemotaxis protein histidine kinase and related kinases compare
Psest_0175 -0.8 -3.5 Xaa-Pro aminopeptidase compare
Psest_2981 -0.8 -1.6 sodium pump decarboxylases, gamma subunit compare
Psest_4044 -0.8 -1.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3537 -0.8 -3.6 hypothetical protein compare
Psest_4084 -0.8 -5.6 oxaloacetate decarboxylase alpha subunit compare
Psest_4184 -0.8 -2.3 hypothetical protein compare
Psest_1860 -0.8 -1.5 Uncharacterized conserved protein compare
Psest_1888 -0.8 -1.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2711 -0.8 -0.8 PilZ domain. compare
Psest_4193 -0.8 -4.8 Predicted signal transduction protein compare
Psest_2585 -0.8 -0.8 pseudouridylate synthase I compare
Psest_1506 -0.8 -3.4 queuosine biosynthesis protein QueC compare
Psest_1707 -0.8 -3.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4095 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1527 -0.8 -5.1 Na+/proline symporter compare
Psest_3306 -0.7 -2.8 conserved hypothetical integral membrane protein compare
Psest_3777 -0.7 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_1639 -0.7 -3.3 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_3014 -0.7 -0.9 cob(I)alamin adenosyltransferase compare
Psest_3960 -0.7 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1160 -0.7 -2.5 Uncharacterized conserved protein compare
Psest_3064 -0.7 -1.9 hypothetical protein compare
Psest_4085 -0.7 -5.1 Biotin carboxylase compare
Psest_1945 -0.7 -1.9 hypothetical protein compare
Psest_4396 -0.7 -3.7 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2809 -0.7 -1.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2561 -0.7 -0.7 hypothetical protein compare
Psest_3968 -0.7 -4.4 Acyl-CoA dehydrogenases compare
Psest_1881 -0.7 -2.4 Nitroreductase compare
Psest_1818 -0.7 -4.8 GDP-mannose 4,6-dehydratase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas stutzeri RCH2

For carbon source Sodium butyrate across organisms