Experiment set12H27 for Pseudomonas stutzeri RCH2

Compare to:

Sodium butyrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1700 +10.1 61.3 Transcriptional regulator compare
Psest_2645 +9.1 55.7 Transcriptional regulator compare
Psest_2260 +3.5 32.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +3.4 32.6 Signal transduction histidine kinase compare
Psest_2651 +3.4 12.1 DNA topoisomerase I, bacterial compare
Psest_0418 +2.7 8.0 diguanylate cyclase (GGDEF) domain conserved
Psest_3862 +2.7 21.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3317 +2.5 8.2 Phosphotransferase System HPr (HPr) Family compare
Psest_0538 +2.3 22.5 Signal transduction histidine kinase compare
Psest_1725 +2.3 17.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1686 +2.1 11.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4273 +2.1 15.4 Lysophospholipase compare
Psest_2775 +2.1 8.9 Glycerol-3-phosphate dehydrogenase compare
Psest_1657 +1.9 4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1292 +1.7 12.0 monothiol glutaredoxin, Grx4 family compare
Psest_1924 +1.7 14.7 adhesin-associated MmpL efflux pump (from data) compare
Psest_3670 +1.7 13.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0717 +1.6 14.2 Protein of unknown function (DUF1631). compare
Psest_1625 +1.6 3.3 hypothetical protein compare
Psest_0693 +1.5 13.9 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1655 +1.5 7.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3762 +1.5 7.3 iron donor protein CyaY compare
Psest_3100 +1.4 7.1 RNA polymerase sigma factor RpoE compare
Psest_0466 +1.4 6.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3970 +1.4 7.6 Transcriptional regulator compare
Psest_2104 +1.3 3.2 IscR-regulated protein YhgI compare
Psest_1840 +1.3 12.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4008 +1.3 10.6 PAS domain S-box compare
Psest_2383 +1.3 8.7 Predicted transcriptional regulators compare
Psest_1661 +1.2 2.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1923 +1.2 5.8 adhesin-associated BNR repeat protein (from data) compare
Psest_0164 +1.2 1.8 Glutaredoxin, GrxC family compare
Psest_0192 +1.2 7.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3296 +1.2 2.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1122 +1.2 10.4 putative adhesin (DUF1302) (from data) compare
Psest_0310 +1.2 4.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2136 +1.1 9.0 Predicted homoserine dehydrogenase compare
Psest_0299 +1.1 2.9 Chemotaxis signal transduction protein compare
Psest_0191 +1.1 1.9 PAS domain S-box compare
Psest_1999 +1.1 1.2 pseudouridine synthase compare
Psest_2072 +1.1 6.0 Methyltransferase domain. compare
Psest_2530 +1.1 5.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4003 +1.1 4.4 TIGR00153 family protein compare
Psest_2229 +1.1 3.0 Uncharacterized protein conserved in bacteria compare
Psest_1569 +1.1 5.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1994 +1.0 4.1 Amidases related to nicotinamidase compare
Psest_3565 +1.0 2.2 hypothetical protein compare
Psest_1656 +1.0 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0708 +1.0 1.9 outer membrane assembly lipoprotein YfiO compare
Psest_1187 +1.0 5.1 exodeoxyribonuclease III compare
Psest_0771 +1.0 7.1 Acyl-CoA hydrolase compare
Psest_2023 +1.0 3.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3370 +1.0 5.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0165 +1.0 3.6 protein-export chaperone SecB compare
Psest_1721 +1.0 2.2 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3371 +0.9 6.8 type IV pilus modification protein PilV compare
Psest_1516 +0.9 3.1 Uncharacterized lipoprotein compare
Psest_2122 +0.9 2.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1719 +0.9 5.6 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_3711 +0.9 8.2 Glutamate synthase domain 2 compare
Psest_1496 +0.9 0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_1722 +0.9 6.3 flagellar protein export ATPase FliI compare
Psest_4293 +0.9 7.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4139 +0.9 7.6 PAS domain S-box compare
Psest_2773 +0.9 5.8 glycerol kinase compare
Psest_3113 +0.9 1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1720 +0.9 5.9 flagellar motor switch protein FliG compare
Psest_3816 +0.9 2.1 DNA-directed RNA polymerase, omega subunit compare
Psest_3217 +0.9 8.5 PAS domain S-box compare
Psest_3140 +0.9 6.1 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_4140 +0.9 6.7 Acyl-CoA dehydrogenases compare
Psest_4113 +0.9 4.5 hypothetical protein compare
Psest_3115 +0.9 4.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0969 +0.9 2.0 transcription elongation factor GreA compare
Psest_1022 +0.8 6.3 Thiol:disulfide interchange protein compare
Psest_3731 +0.8 6.9 exopolyphosphatase compare
Psest_2448 +0.8 3.0 AraC-type DNA-binding domain-containing proteins compare
Psest_2066 +0.8 1.6 ABC-type uncharacterized transport system, permease component compare
Psest_4054 +0.8 2.2 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_3562 +0.8 1.8 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_3247 +0.8 1.4 Uncharacterized membrane protein compare
Psest_1752 +0.8 2.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3974 +0.8 3.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0028 +0.8 3.9 Coproporphyrinogen III oxidase compare
Psest_3112 +0.8 3.6 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2096 +0.8 1.5 Domain of unknown function (DUF1883). compare
Psest_2461 +0.8 3.9 tRNA 2-selenouridine synthase compare
Psest_0558 +0.8 1.1 urease, beta subunit compare
Psest_1718 +0.8 3.9 flagellar hook-basal body complex protein FliE compare
Psest_4382 +0.8 7.4 hypothetical protein compare
Psest_3710 +0.8 6.8 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1659 +0.8 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1740 +0.8 4.6 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_2527 +0.8 4.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2091 +0.8 2.0 Molecular chaperone (small heat shock protein) compare
Psest_0311 +0.8 4.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4274 +0.8 2.9 hypothetical protein compare
Psest_0857 +0.8 2.0 Membrane transporters of cations and cationic drugs compare
Psest_1723 +0.8 3.4 flagellar export protein FliJ compare
Psest_1731 +0.7 2.2 flagellar biosynthetic protein FliO compare
Psest_2000 +0.7 4.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2446 +0.7 2.7 acetyl-CoA acetyltransferases compare
Psest_3114 +0.7 4.7 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1734 +0.7 3.6 flagellar biosynthetic protein FliR compare
Psest_2024 +0.7 4.3 isocitrate dehydrogenase, NADP-dependent, prokaryotic type compare
Psest_2551 +0.7 5.0 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_1186 +0.7 4.2 heavy metal sensor kinase compare
Psest_1762 +0.7 1.8 cytochrome c-type biogenesis protein CcmI compare
Psest_0446 +0.7 3.7 hypothetical protein compare
Psest_3812 +0.7 2.5 Uncharacterized protein conserved in bacteria compare
Psest_2396 +0.7 4.8 Predicted transcriptional regulators compare
Psest_3546 +0.7 0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2304 +0.7 1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2798 +0.7 2.4 Truncated hemoglobins compare
Psest_1322 +0.7 2.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1481 +0.7 5.3 Predicted membrane protein compare
Psest_0417 +0.7 1.9 Acyl-CoA dehydrogenases compare
Psest_3720 +0.7 5.8 penicillin-binding protein, 1A family compare
Psest_3323 +0.7 3.2 ribonuclease, Rne/Rng family compare
Psest_1732 +0.7 2.4 flagellar biosynthetic protein FliP compare
Psest_1782 +0.6 1.3 Predicted transcriptional regulators compare
Psest_1313 +0.6 1.3 Uncharacterized conserved small protein compare
Psest_3664 +0.6 1.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0309 +0.6 1.1 RND family efflux transporter, MFP subunit compare
Psest_3372 +0.6 4.5 Tfp pilus assembly protein PilW compare
Psest_1491 +0.6 1.7 Cold shock proteins compare
Psest_4163 +0.6 1.8 hypothetical protein compare
Psest_2288 +0.6 2.5 trigger factor compare
Psest_3093 +0.6 3.2 hypothetical protein compare
Psest_4142 +0.6 1.1 hypothetical protein compare
Psest_4067 +0.6 2.4 Predicted membrane protein compare
Psest_1738 +0.6 3.3 flagellar biosynthetic protein FlhF compare
Psest_3735 +0.6 1.1 uncharacterized domain 1 compare
Psest_3496 +0.6 1.3 Predicted metal-binding protein compare
Psest_2622 +0.6 2.3 TadE-like protein. compare
Psest_4051 +0.6 1.8 molybdenum-pterin binding domain compare
Psest_3433 +0.6 2.1 ATP-binding cassette protein, ChvD family compare
Psest_3790 +0.6 4.5 Cytochrome c5 compare
Psest_1184 +0.6 2.7 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1643 +0.6 1.0 hypothetical protein compare
Psest_0958 +0.6 3.4 Oligoketide cyclase/lipid transport protein compare
Psest_2594 +0.6 2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0401 +0.6 1.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3192 +0.6 4.3 diguanylate cyclase (GGDEF) domain compare
Psest_2772 +0.6 2.6 MIP family channel proteins compare
Psest_1566 +0.6 3.8 Cation/multidrug efflux pump compare
Psest_2017 +0.6 2.9 Predicted acyltransferase compare
Psest_2973 +0.6 2.5 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1626 +0.6 1.9 Predicted integral membrane protein compare
Psest_1475 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
Psest_3374 +0.6 4.4 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_4340 +0.6 1.8 Protein of unknown function (DUF3617). compare
Psest_3832 +0.6 0.7 hypothetical protein compare
Psest_2901 +0.6 1.2 hypothetical protein compare
Psest_2399 +0.6 3.5 Short-chain dehydrogenases of various substrate specificities compare
Psest_0243 +0.6 1.3 hypothetical protein compare
Psest_2724 +0.6 1.1 hypothetical protein compare
Psest_0350 +0.6 3.6 Predicted signal-transduction protein containing cAMP-binding and CBS domains compare
Psest_3479 +0.6 2.8 molybdenum cofactor synthesis domain compare
Psest_0459 +0.5 4.2 Predicted carbamoyl transferase, NodU family compare
Psest_0355 +0.5 0.8 Glycine cleavage system regulatory protein compare
Psest_1462 +0.5 3.1 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_0950 +0.5 2.3 hypothetical protein compare
Psest_3932 +0.5 2.5 nitrogen regulation protein NR(I) compare
Psest_3146 +0.5 0.7 hypothetical protein compare
Psest_1856 +0.5 2.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2532 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Psest_2958 +0.5 4.4 flagellar hook-associated protein 3 compare
Psest_2959 +0.5 4.5 flagellar hook-associated protein FlgK compare
Psest_0378 +0.5 2.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_0476 +0.5 3.5 type I secretion outer membrane protein, TolC family compare
Psest_1565 +0.5 2.6 RND family efflux transporter, MFP subunit compare
Psest_1921 +0.5 2.3 Protein of unknown function (DUF2797). compare
Psest_3659 +0.5 1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3671 +0.5 3.0 Rhodanese-related sulfurtransferase compare
Psest_1141 +0.5 3.6 diguanylate cyclase (GGDEF) domain compare
Psest_1280 +0.5 4.4 TonB-dependent copper receptor compare
Psest_2048 +0.5 1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3212 +0.5 1.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2219 +0.5 2.8 pyruvate dehydrogenase E1 component, alpha subunit compare
Psest_3784 +0.5 1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0060 +0.5 2.0 Predicted Fe-S protein compare
Psest_1305 +0.5 1.2 Heat shock protein compare
Psest_1907 +0.5 1.1 hypothetical protein compare
Psest_3693 +0.5 1.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0833 +0.5 2.3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_1775 +0.5 2.1 Predicted ATPase (AAA+ superfamily) compare
Psest_0636 +0.5 3.8 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1370 +0.5 1.6 hypothetical protein compare
Psest_0385 +0.5 1.4 Conserved secreted protein compare
Psest_0064 +0.5 1.4 Transcriptional regulator compare
Psest_1631 +0.5 0.8 Uncharacterized conserved small protein compare
Psest_2720 +0.5 1.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1194 +0.5 3.1 Kef-type K+ transport system, predicted NAD-binding component compare
Psest_0664 +0.5 2.6 diguanylate cyclase (GGDEF) domain compare
Psest_1542 +0.5 2.5 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_1444 +0.5 2.1 Curli production assembly/transport component CsgF. compare
Psest_2764 +0.5 1.0 hypothetical protein compare
Psest_1991 +0.5 3.6 Glutathione S-transferase compare
Psest_2444 +0.5 3.1 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas stutzeri RCH2

For carbon source Sodium butyrate across organisms