Experiment set12H24 for Pseudomonas stutzeri RCH2

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
Psest_2584 -5.3 -9.5 Phosphoribosylanthranilate isomerase compare
Psest_1473 -5.3 -8.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3650 -5.2 -18.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -5.1 -12.1 anthranilate phosphoribosyltransferase compare
Psest_3647 -4.6 -9.3 Indole-3-glycerol phosphate synthase compare
Psest_0062 -4.0 -12.8 tryptophan synthase, alpha subunit compare
Psest_0063 -4.0 -14.4 tryptophan synthase, beta subunit compare
Psest_2579 -3.7 -3.6 amidophosphoribosyltransferase compare
Psest_1686 -3.0 -6.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1012 -3.0 -6.9 Signal transduction histidine kinase compare
Psest_3226 -2.9 -2.0 Predicted membrane protein compare
Psest_3649 -2.7 -10.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1474 -2.4 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_2333 -2.3 -1.8 Protein of unknown function (DUF3359). compare
Psest_0489 -2.3 -1.6 phosphoserine phosphatase SerB compare
Psest_3301 -2.0 -4.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_3810 -2.0 -1.4 orotate phosphoribosyltransferase compare
Psest_1013 -1.9 -3.4 phosphoribosylamine--glycine ligase compare
Psest_3159 -1.9 -5.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0297 -1.9 -5.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3129 -1.9 -2.1 tyrosine recombinase XerD compare
Psest_3306 -1.8 -5.0 conserved hypothetical integral membrane protein compare
Psest_3031 -1.7 -1.3 hypothetical protein compare
Psest_0999 -1.7 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1695 -1.7 -3.3 Tfp pilus assembly protein PilZ compare
Psest_3304 -1.5 -5.4 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3511 -1.5 -6.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) conserved
Psest_3303 -1.5 -5.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2712 -1.4 -5.1 Surface lipoprotein compare
Psest_3809 -1.4 -4.3 hypothetical protein compare
Psest_3092 -1.4 -2.4 ribonuclease III, bacterial compare
Psest_1724 -1.4 -2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1295 -1.4 -6.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1661 -1.3 -2.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3288 -1.3 -8.8 type IV-A pilus assembly ATPase PilB compare
Psest_3519 -1.3 -4.4 Uncharacterized conserved protein compare
Psest_1655 -1.3 -4.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2293 -1.3 -1.9 hypothetical protein compare
Psest_3816 -1.3 -1.7 DNA-directed RNA polymerase, omega subunit compare
Psest_0393 -1.3 -6.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4221 -1.3 -4.6 homoserine kinase, Neisseria type compare
Psest_1115 -1.2 -3.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2845 -1.2 -7.3 [Protein-PII] uridylyltransferase compare
Psest_1947 -1.2 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1167 -1.2 -1.4 hypothetical protein compare
Psest_1163 -1.2 -3.6 diguanylate cyclase (GGDEF) domain compare
Psest_0491 -1.2 -7.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1704 -1.2 -1.7 Dehydrogenases (flavoproteins) compare
Psest_3721 -1.2 -5.5 Malic enzyme compare
Psest_1260 -1.2 -5.6 type IV pilus biogenesis/stability protein PilW compare
Psest_0164 -1.2 -1.0 Glutaredoxin, GrxC family compare
Psest_1509 -1.2 -6.7 quinolinate synthetase complex, A subunit compare
Psest_3307 -1.2 -5.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1242 -1.2 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3305 -1.2 -6.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0300 -1.1 -7.2 Methyl-accepting chemotaxis protein compare
Psest_4003 -1.1 -5.4 TIGR00153 family protein compare
Psest_1665 -1.1 -4.3 hypothetical protein compare
Psest_3731 -1.1 -7.7 exopolyphosphatase compare
Psest_3512 -1.1 -7.1 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_1037 -1.1 -2.0 acetolactate synthase, small subunit compare
Psest_2933 -1.1 -7.6 Signal transduction histidine kinase compare
Psest_1657 -1.1 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3806 -1.1 -4.6 Phosphomannomutase compare
Psest_2651 -1.1 -3.0 DNA topoisomerase I, bacterial compare
Psest_3178 -1.1 -2.9 formyltetrahydrofolate deformylase compare
Psest_4097 -1.0 -7.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3884 -1.0 -1.0 Signal transduction histidine kinase compare
Psest_1656 -1.0 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4044 -1.0 -3.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3716 -1.0 -6.0 Tfp pilus assembly protein PilP compare
Psest_3715 -1.0 -8.1 type IV pilus secretin (or competence protein) PilQ compare
Psest_3717 -1.0 -4.8 Tfp pilus assembly protein PilO compare
Psest_3079 -1.0 -5.7 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) compare
Psest_2325 -1.0 -6.2 alpha-L-glutamate ligase-related protein compare
Psest_0498 -1.0 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_2324 -1.0 -8.0 hypothetical protein compare
Psest_1659 -0.9 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0558 -0.9 -0.9 urease, beta subunit compare
Psest_3720 -0.9 -7.7 penicillin-binding protein, 1A family compare
Psest_2855 -0.9 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1920 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3718 -0.9 -3.3 Tfp pilus assembly protein PilN compare
Psest_3670 -0.9 -6.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2323 -0.9 -6.3 Uncharacterized protein conserved in archaea compare
Psest_2566 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0511 -0.8 -1.2 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0248 -0.8 -4.7 Transcriptional regulator compare
Psest_3998 -0.8 -4.0 glutamate--cysteine ligase compare
Psest_3080 -0.8 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0706 -0.8 -4.7 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1532 -0.8 -2.4 DNA recombination-dependent growth factor C compare
Psest_3270 -0.8 -1.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2975 -0.8 -2.4 tRNA_Arg_CCT compare
Psest_3860 -0.8 -1.8 Predicted permeases compare
Psest_3287 -0.8 -3.3 Type II secretory pathway, component PulF compare
Psest_4005 -0.8 -3.5 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_4142 -0.8 -1.1 hypothetical protein compare
Psest_1660 -0.8 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3323 -0.8 -3.6 ribonuclease, Rne/Rng family compare
Psest_1999 -0.8 -1.1 pseudouridine synthase compare
Psest_3719 -0.8 -4.9 type IV pilus assembly protein PilM compare
Psest_3069 -0.8 -1.5 3-oxoadipate enol-lactonase compare
Psest_1975 -0.8 -4.8 Predicted transcriptional regulators compare
Psest_3476 -0.8 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3767 -0.7 -2.4 tyrosine recombinase XerC compare
Psest_4345 -0.7 -4.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1144 -0.7 -1.5 AmpG-related permease compare
Psest_0515 -0.7 -2.1 rare lipoprotein A compare
Psest_4191 -0.7 -1.9 Transcriptional regulator compare
Psest_1056 -0.7 -1.8 2-isopropylmalate synthase, bacterial type compare
Psest_1087 -0.7 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_1049 -0.7 -3.0 Uncharacterized paraquat-inducible protein A compare
Psest_1486 -0.7 -2.3 hypothetical protein compare
Psest_4274 -0.7 -1.4 hypothetical protein compare
Psest_0334 -0.7 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3322 -0.7 -5.9 TIGR02099 family protein compare
Psest_2343 -0.7 -2.7 Mg-dependent DNase compare
Psest_2911 -0.7 -1.4 Protein of unknown function (DUF2945). compare
Psest_3819 -0.7 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3146 -0.7 -1.3 hypothetical protein compare
Psest_2719 -0.7 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1259 -0.7 -2.9 23S rRNA m2A2503 methyltransferase compare
Psest_1804 -0.7 -1.3 Superfamily II DNA and RNA helicases compare
Psest_3084 -0.7 -2.0 methyltransferase, putative compare
Psest_1837 -0.7 -3.9 Endoglucanase compare
Psest_1008 -0.7 -1.0 hypothetical protein compare
Psest_1000 -0.7 -4.5 PAS domain S-box compare
Psest_0066 -0.7 -1.1 Protein of unknown function (DUF3060). compare
Psest_0708 -0.6 -1.0 outer membrane assembly lipoprotein YfiO compare
Psest_2580 -0.6 -2.5 Uncharacterized membrane protein, required for colicin V production compare
Psest_2945 -0.6 -1.0 septum site-determining protein MinC compare
Psest_2637 -0.6 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0655 -0.6 -1.6 Chemotaxis signal transduction protein compare
Psest_0020 -0.6 -2.3 K+ transport systems, NAD-binding component compare
Psest_3228 -0.6 -3.8 Zn-dependent protease with chaperone function compare
Psest_2907 -0.6 -0.9 Protein of unknown function (DUF3618). compare
Psest_2586 -0.6 -5.5 FimV N-terminal domain compare
Psest_1001 -0.6 -1.8 hypothetical protein compare
Psest_4128 -0.6 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1166 -0.6 -1.6 transcriptional regulator, ArgP family compare
Psest_1111 -0.6 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2872 -0.6 -1.1 protein RecA compare
Psest_0296 -0.6 -3.6 glutathione synthetase, prokaryotic compare
Psest_3168 -0.6 -1.5 Molybdopterin converting factor, large subunit compare
Psest_0533 -0.6 -2.4 Sel1 repeat. compare
Psest_3988 -0.6 -3.2 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1139 -0.6 -2.1 PAS domain S-box compare
Psest_1161 -0.6 -1.5 E3 Ubiquitin ligase. compare
Psest_0014 -0.6 -2.1 PilZ domain. compare
Psest_4098 -0.6 -1.5 Superfamily I DNA and RNA helicases compare
Psest_1078 -0.6 -2.3 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1860 -0.6 -1.9 Uncharacterized conserved protein compare
Psest_3478 -0.5 -0.7 Cytochrome B561 compare
Psest_1748 -0.5 -3.1 CheW-like domain. compare
Psest_0346 -0.5 -1.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0592 -0.5 -1.9 hypothetical protein compare
Psest_2520 -0.5 -0.9 Predicted SAM-dependent methyltransferase compare
Psest_0718 -0.5 -1.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_0837 -0.5 -2.2 Putative lipid carrier protein compare
Psest_0737 -0.5 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_3878 -0.5 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3180 -0.5 -3.4 Exonuclease I compare
Psest_3215 -0.5 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_4256 -0.5 -2.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2475 -0.5 -2.4 Acyl-CoA dehydrogenases compare
Psest_4082 -0.5 -1.6 hypothetical protein compare
Psest_1709 -0.5 -1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1562 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1595 -0.5 -1.0 Copper chaperone compare
Psest_3813 -0.5 -3.2 ribonuclease PH compare
Psest_3395 -0.5 -0.8 hypothetical protein compare
Psest_0601 -0.5 -1.1 hypothetical protein compare
Psest_0212 -0.5 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_2870 -0.5 -1.8 TIGR00730 family protein compare
Psest_3075 -0.5 -3.4 sodium/proline symporter compare
Psest_0170 -0.5 -2.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_2458 -0.5 -1.5 MoxR-like ATPases compare
Psest_1813 -0.5 -3.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2424 -0.5 -0.9 K+ transport systems, NAD-binding component compare
Psest_2067 -0.5 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4363 -0.5 -3.0 ATPases involved in chromosome partitioning compare
Psest_0182 -0.5 -2.6 glycine cleavage system H protein compare
Psest_0445 -0.5 -3.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0872 -0.5 -0.6 Helix-turn-helix. compare
Psest_4303 -0.5 -1.1 HEAT repeat. compare
Psest_4252 -0.5 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3645 -0.5 -3.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4307 -0.5 -1.2 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1814 -0.5 -4.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2138 -0.5 -1.9 RND family efflux transporter, MFP subunit compare
Psest_1565 -0.5 -2.2 RND family efflux transporter, MFP subunit compare
Psest_0292 -0.5 -1.1 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_4021 -0.5 -1.8 hypothetical protein compare
Psest_0587 -0.5 -1.2 Domain of Unknown Function (DUF326). compare
Psest_0031 -0.5 -0.9 Uncharacterized conserved protein compare
Psest_0320 -0.5 -2.4 ABC-type multidrug transport system, ATPase component compare
Psest_3838 -0.5 -1.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0575 -0.5 -0.7 HrpA-like helicases compare
Psest_3913 -0.5 -1.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source casamino acids in Pseudomonas stutzeri RCH2

For carbon source casamino acids across organisms