Experiment set12H22 for Pseudomonas stutzeri RCH2

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.9 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3647 -7.6 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_0508 -7.3 -8.6 gamma-glutamyl phosphate reductase compare
Psest_3648 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
Psest_3650 -7.1 -11.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0155 -6.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3794 -6.6 -14.9 Transcriptional regulators conserved
Psest_2591 -6.6 -4.6 3-isopropylmalate dehydratase, large subunit compare
Psest_2584 -6.6 -6.4 Phosphoribosylanthranilate isomerase compare
Psest_0279 -6.6 -7.8 methionine biosynthesis protein MetW compare
Psest_0346 -6.5 -4.5 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0152 -6.4 -7.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_3384 -6.4 -8.7 glutamate 5-kinase compare
Psest_3298 -6.4 -11.5 histidinol dehydrogenase compare
Psest_0062 -6.3 -12.9 tryptophan synthase, alpha subunit compare
Psest_3866 -6.3 -19.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2578 -6.3 -15.3 O-succinylhomoserine sulfhydrylase compare
Psest_0153 -6.1 -13.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -6.0 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_0063 -6.0 -12.1 tryptophan synthase, beta subunit compare
Psest_3299 -6.0 -18.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3226 -5.7 -2.0 Predicted membrane protein compare
Psest_0325 -5.6 -16.1 Putative threonine efflux protein compare
Psest_0326 -5.5 -17.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0280 -5.5 -19.1 homoserine O-acetyltransferase compare
Psest_3322 -5.5 -27.4 TIGR02099 family protein compare
Psest_3793 -5.4 -11.2 D-alanine dehydrogenase (EC 1.4.99.-) (from data) conserved
Psest_0313 -5.3 -7.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3998 -5.3 -6.3 glutamate--cysteine ligase compare
Psest_3943 -5.2 -8.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0687 -5.1 -12.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3864 -4.9 -17.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3301 -4.9 -5.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0347 -4.8 -25.1 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_2589 -4.7 -12.5 3-isopropylmalate dehydrogenase compare
Psest_2088 -4.3 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_3818 -4.2 -11.1 endoribonuclease L-PSP, putative compare
Psest_1295 -4.0 -8.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3720 -4.0 -23.7 penicillin-binding protein, 1A family compare
Psest_1037 -3.9 -4.0 acetolactate synthase, small subunit compare
Psest_1527 -3.7 -16.4 Na+/proline symporter compare
Psest_2579 -3.6 -4.9 amidophosphoribosyltransferase compare
Psest_4191 -3.5 -5.3 Transcriptional regulator compare
Psest_1473 -3.5 -9.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1765 -3.3 -10.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1814 -3.3 -21.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2864 -3.3 -7.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1686 -3.2 -8.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3649 -3.0 -11.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0327 -2.9 -4.5 Transcriptional regulator compare
Psest_0999 -2.9 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2967 -2.9 -7.1 flagellar basal-body rod protein FlgC compare
Psest_1013 -2.9 -2.0 phosphoribosylamine--glycine ligase compare
Psest_2809 -2.7 -5.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0349 -2.6 -8.4 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_3721 -2.6 -10.0 Malic enzyme compare
Psest_3297 -2.5 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1474 -2.5 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_4085 -2.4 -15.0 Biotin carboxylase compare
Psest_0442 -2.3 -1.6 ATPases of the AAA+ class compare
Psest_2651 -2.3 -5.6 DNA topoisomerase I, bacterial compare
Psest_4086 -2.3 -13.2 Transcriptional regulator compare
Psest_4084 -2.2 -15.1 oxaloacetate decarboxylase alpha subunit compare
Psest_0489 -2.2 -2.1 phosphoserine phosphatase SerB compare
Psest_1496 -2.2 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_1704 -2.2 -2.0 Dehydrogenases (flavoproteins) compare
Psest_3766 -2.2 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_2333 -2.1 -1.8 Protein of unknown function (DUF3359). compare
Psest_3159 -2.1 -8.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2968 -2.0 -10.2 flagellar basal-body rod protein FlgB compare
Psest_2329 -2.0 -13.8 Transcriptional regulator compare
Psest_2324 -2.0 -15.6 hypothetical protein compare
Psest_2104 -1.9 -2.5 IscR-regulated protein YhgI compare
Psest_0411 -1.9 -10.9 biotin synthetase compare
Psest_2507 -1.9 -13.4 Flagellin and related hook-associated proteins compare
Psest_1813 -1.9 -12.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2532 -1.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_3664 -1.8 -1.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1724 -1.8 -4.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0498 -1.8 -2.1 ribosome small subunit-dependent GTPase A compare
Psest_0359 -1.7 -4.2 Transcriptional regulators compare
Psest_1082 -1.7 -2.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2504 -1.7 -6.1 flagellar biosynthetic protein FliS compare
Psest_0514 -1.7 -5.6 lytic murein transglycosylase B compare
Psest_2325 -1.7 -10.3 alpha-L-glutamate ligase-related protein compare
Psest_2323 -1.7 -11.7 Uncharacterized protein conserved in archaea compare
Psest_0466 -1.6 -5.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2810 -1.6 -5.4 5'/3'-nucleotidase SurE compare
Psest_0673 -1.6 -5.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_4097 -1.6 -10.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2232 -1.5 -12.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2001 -1.5 -2.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1000 -1.5 -8.1 PAS domain S-box compare
Psest_0515 -1.5 -4.8 rare lipoprotein A compare
Psest_3042 -1.5 -2.1 Nitrate reductase cytochrome c-type subunit compare
Psest_0993 -1.4 -8.2 Glucose-6-phosphate isomerase compare
Psest_0520 -1.4 -1.3 hypothetical protein compare
Psest_1947 -1.4 -0.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0212 -1.4 -2.7 exodeoxyribonuclease V, gamma subunit compare
Psest_1012 -1.4 -5.0 Signal transduction histidine kinase compare
Psest_2945 -1.4 -1.7 septum site-determining protein MinC compare
Psest_1640 -1.4 -9.8 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0348 -1.4 -4.7 hypothetical protein compare
Psest_2090 -1.3 -3.9 Protein of unknown function (DUF2970). compare
Psest_0028 -1.3 -4.6 Coproporphyrinogen III oxidase compare
Psest_2946 -1.3 -3.4 septum site-determining protein MinD compare
Psest_4044 -1.3 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0306 -1.2 -9.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3810 -1.2 -1.8 orotate phosphoribosyltransferase compare
Psest_0718 -1.2 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_2308 -1.2 -1.6 Predicted Fe-S protein compare
Psest_0958 -1.2 -5.3 Oligoketide cyclase/lipid transport protein compare
Psest_1292 -1.1 -6.3 monothiol glutaredoxin, Grx4 family compare
Psest_2646 -1.1 -1.1 SOS regulatory protein LexA compare
Psest_3792 -1.1 -3.6 Putative translation initiation inhibitor, yjgF family compare
Psest_1486 -1.1 -3.4 hypothetical protein compare
Psest_0257 -1.1 -2.2 Predicted Zn-dependent peptidases compare
Psest_0445 -1.1 -8.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3338 -1.1 -1.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3148 -1.1 -1.4 hypothetical protein compare
Psest_1080 -1.1 -6.8 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_1744 -1.1 -5.0 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_0284 -1.1 -7.9 pyridoxal phosphate enzyme, YggS family compare
Psest_1144 -1.0 -1.8 AmpG-related permease compare
Psest_1510 -1.0 -3.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3306 -1.0 -3.1 conserved hypothetical integral membrane protein compare
Psest_2025 -1.0 -1.3 cold shock domain protein CspD compare
Psest_2963 -1.0 -7.0 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_0485 -1.0 -3.3 clan AA aspartic protease, TIGR02281 family compare
Psest_2650 -1.0 -2.5 hypothetical protein compare
Psest_0969 -1.0 -1.3 transcription elongation factor GreA compare
Psest_1001 -1.0 -2.6 hypothetical protein compare
Psest_1111 -1.0 -2.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3304 -1.0 -4.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2712 -1.0 -3.6 Surface lipoprotein compare
Psest_2971 -1.0 -6.3 flagella basal body P-ring formation protein FlgA compare
Psest_2316 -1.0 -7.1 phosphoenolpyruvate synthase compare
Psest_2527 -1.0 -5.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2961 -1.0 -3.7 Flagellar basal-body P-ring protein compare
Psest_0412 -1.0 -6.4 8-amino-7-oxononanoate synthase compare
Psest_3339 -1.0 -4.6 Signal transduction histidine kinase compare
Psest_0867 -0.9 -2.1 hypothetical protein compare
Psest_2944 -0.9 -1.2 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0851 -0.9 -7.0 Transcriptional regulators compare
Psest_1083 -0.9 -6.5 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_2964 -0.9 -5.4 flagellar basal-body rod protein FlgF compare
Psest_1505 -0.9 -1.8 Organic radical activating enzymes compare
Psest_2285 -0.9 -2.8 ATP-dependent protease La compare
Psest_0413 -0.9 -3.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3843 -0.9 -5.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1763 -0.9 -3.3 hypothetical protein compare
Psest_2960 -0.9 -4.9 flagellar rod assembly protein/muramidase FlgJ compare
Psest_3228 -0.9 -6.0 Zn-dependent protease with chaperone function compare
Psest_4335 -0.9 -1.9 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2988 -0.8 -3.8 aspartate kinase, monofunctional class compare
Psest_3303 -0.8 -3.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3438 -0.8 -3.9 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_2505 -0.8 -6.1 Flagellar capping protein compare
Psest_2862 -0.8 -5.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2293 -0.8 -1.4 hypothetical protein compare
Psest_0164 -0.8 -0.8 Glutaredoxin, GrxC family compare
Psest_2566 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1528 -0.8 -3.2 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_1562 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0170 -0.8 -3.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2643 -0.8 -1.9 Beta-glucosidase-related glycosidases compare
Psest_0297 -0.8 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3884 -0.8 -0.9 Signal transduction histidine kinase compare
Psest_0312 -0.8 -3.9 Superfamily II DNA and RNA helicases compare
Psest_1957 -0.8 -5.7 outer membrane porin, OprD family. compare
Psest_1504 -0.8 -2.6 tol-pal system protein YbgF compare
Psest_3518 -0.8 -1.3 Transcriptional regulators compare
Psest_2379 -0.8 -5.3 PAS domain S-box compare
Psest_3853 -0.8 -1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2744 -0.8 -1.5 Uncharacterized conserved protein compare
Psest_4003 -0.8 -3.3 TIGR00153 family protein compare
Psest_3092 -0.7 -1.3 ribonuclease III, bacterial compare
Psest_2083 -0.7 -3.0 Putative sterol carrier protein compare
Psest_2958 -0.7 -6.1 flagellar hook-associated protein 3 compare
Psest_3305 -0.7 -3.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1954 -0.7 -2.1 hypothetical protein compare
Psest_2304 -0.7 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1879 -0.7 -1.9 Trk-type K+ transport systems, membrane components compare
Psest_2845 -0.7 -5.2 [Protein-PII] uridylyltransferase compare
Psest_3988 -0.7 -3.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2158 -0.7 -6.1 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0998 -0.7 -1.9 poly(A) polymerase compare
Psest_4219 -0.7 -1.2 DNA polymerase I compare
Psest_2628 -0.7 -2.4 Flp pilus assembly protein, protease CpaA compare
Psest_0521 -0.7 -4.6 lytic murein transglycosylase compare
Psest_1075 -0.7 -3.3 Predicted transcriptional regulators compare
Psest_3323 -0.7 -2.5 ribonuclease, Rne/Rng family compare
Psest_0292 -0.7 -1.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1447 -0.7 -2.0 Putative threonine efflux protein compare
Psest_2719 -0.7 -1.4 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3180 -0.7 -3.8 Exonuclease I compare
Psest_1480 -0.7 -2.4 arsenate reductase (glutaredoxin) compare
Psest_2026 -0.7 -4.6 Uncharacterized conserved protein compare
Psest_2855 -0.7 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0362 -0.7 -2.0 TRAP-type C4-dicarboxylate transport system, small permease component compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Alanine in Pseudomonas stutzeri RCH2

For carbon source D-Alanine across organisms