Experiment set12H16 for Pseudomonas stutzeri RCH2

Compare to:

L-Isoleucine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_2448 -6.5 -6.3 AraC-type DNA-binding domain-containing proteins conserved
Psest_0279 -6.5 -7.7 methionine biosynthesis protein MetW compare
Psest_2446 -6.4 -4.4 acetyl-CoA acetyltransferases compare
Psest_2591 -5.8 -5.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0062 -5.8 -14.6 tryptophan synthase, alpha subunit compare
Psest_3517 -5.7 -21.3 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) compare
Psest_3298 -5.5 -13.8 histidinol dehydrogenase compare
Psest_2584 -5.5 -9.9 Phosphoribosylanthranilate isomerase compare
Psest_0280 -5.5 -18.6 homoserine O-acetyltransferase compare
Psest_3650 -5.4 -18.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -5.4 -10.9 anthranilate phosphoribosyltransferase compare
Psest_2578 -5.3 -16.6 O-succinylhomoserine sulfhydrylase compare
Psest_0325 -5.2 -15.9 Putative threonine efflux protein compare
Psest_0155 -5.1 -10.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0063 -5.0 -15.0 tryptophan synthase, beta subunit compare
Psest_3299 -5.0 -17.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3647 -4.9 -10.9 Indole-3-glycerol phosphate synthase compare
Psest_1292 -4.8 -9.2 monothiol glutaredoxin, Grx4 family compare
Psest_3998 -4.8 -8.0 glutamate--cysteine ligase compare
Psest_1640 -4.7 -18.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0313 -4.6 -9.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1037 -4.5 -5.0 acetolactate synthase, small subunit compare
Psest_0450 -4.5 -12.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
Psest_2589 -4.4 -12.0 3-isopropylmalate dehydrogenase compare
Psest_2590 -4.4 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psest_0326 -4.3 -15.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0508 -4.2 -11.2 gamma-glutamyl phosphate reductase compare
Psest_0152 -4.2 -6.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_0687 -4.1 -12.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3518 -4.0 -1.9 Transcriptional regulators compare
Psest_3943 -3.9 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3960 -3.9 -2.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2088 -3.7 -4.4 Uncharacterized protein conserved in bacteria compare
Psest_3384 -3.7 -10.2 glutamate 5-kinase compare
Psest_3516 -3.7 -9.9 Leucine dehydrogenase (EC 1.4.1.9) (from data) compare
Psest_2988 -3.6 -8.8 aspartate kinase, monofunctional class compare
Psest_2320 -3.5 -9.9 2-methylcitrate synthase/citrate synthase II conserved
Psest_0153 -3.5 -11.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3670 -3.3 -15.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2445 -3.2 -7.1 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
Psest_2579 -3.2 -5.3 amidophosphoribosyltransferase compare
Psest_0999 -3.2 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0327 -3.0 -5.0 Transcriptional regulator compare
Psest_3864 -2.9 -16.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3159 -2.8 -2.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1657 -2.8 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1013 -2.5 -2.4 phosphoribosylamine--glycine ligase compare
Psest_2437 -2.5 -5.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1704 -2.4 -1.6 Dehydrogenases (flavoproteins) compare
Psest_0193 -2.4 -2.2 conserved hypothetical protein compare
Psest_1474 -2.3 -2.3 phosphoribosylaminoimidazole synthetase compare
Psest_0296 -2.2 -12.1 glutathione synthetase, prokaryotic compare
Psest_1661 -2.1 -2.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0571 -2.0 -10.9 Transcriptional regulators conserved
Psest_2447 -2.0 -3.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3226 -2.0 -1.9 Predicted membrane protein compare
Psest_3944 -1.9 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0489 -1.9 -1.8 phosphoserine phosphatase SerB compare
Psest_3810 -1.8 -1.7 orotate phosphoribosyltransferase compare
Psest_3129 -1.7 -1.9 tyrosine recombinase XerD compare
Psest_0442 -1.6 -2.8 ATPases of the AAA+ class compare
Psest_2436 -1.5 -5.6 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) conserved
Psest_3816 -1.5 -2.1 DNA-directed RNA polymerase, omega subunit compare
Psest_3767 -1.4 -4.8 tyrosine recombinase XerC compare
Psest_1659 -1.4 -2.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2744 -1.4 -2.3 Uncharacterized conserved protein compare
Psest_1082 -1.3 -2.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3123 -1.3 -2.1 dihydroorotase, homodimeric type compare
Psest_1947 -1.3 -0.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2322 -1.3 -3.0 Transcriptional regulators compare
Psest_1765 -1.3 -6.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1277 -1.2 -8.9 2-isopropylmalate synthase, yeast type compare
Psest_4191 -1.2 -3.3 Transcriptional regulator compare
Psest_4044 -1.2 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4083 -1.1 -8.5 Predicted permease compare
Psest_1655 -1.1 -4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4012 -1.1 -7.6 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_0359 -1.1 -3.2 Transcriptional regulators compare
Psest_1000 -1.1 -6.9 PAS domain S-box compare
Psest_1282 -1.1 -1.7 Amidases related to nicotinamidase compare
Psest_0814 -1.1 -3.4 MoxR-like ATPases compare
Psest_1079 -1.1 -4.2 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_2321 -1.1 -2.6 methylisocitrate lyase compare
Psest_1080 -1.1 -6.5 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_2325 -1.1 -7.7 alpha-L-glutamate ligase-related protein compare
Psest_3301 -1.0 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_2324 -1.0 -8.7 hypothetical protein compare
Psest_2243 -1.0 -1.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3377 -1.0 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1473 -1.0 -4.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_4098 -1.0 -2.4 Superfamily I DNA and RNA helicases compare
Psest_2532 -1.0 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3910 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3322 -0.9 -8.4 TIGR02099 family protein compare
Psest_3664 -0.9 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0170 -0.9 -4.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_0722 -0.9 -4.6 Predicted ATPase compare
Psest_1496 -0.9 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_0851 -0.9 -6.5 Transcriptional regulators compare
Psest_2719 -0.9 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1144 -0.9 -1.5 AmpG-related permease compare
Psest_0737 -0.9 -1.0 Cu(I)-responsive transcriptional regulator compare
Psest_2104 -0.9 -1.5 IscR-regulated protein YhgI compare
Psest_1083 -0.8 -5.8 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_1509 -0.8 -4.3 quinolinate synthetase complex, A subunit compare
Psest_0212 -0.8 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_1772 -0.8 -3.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2545 -0.8 -2.4 recombination protein RecR compare
Psest_2864 -0.8 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0716 -0.8 -2.1 Protein of unknown function (DUF3094). compare
Psest_0218 -0.8 -2.5 Acyl-CoA hydrolase compare
Psest_3092 -0.8 -1.5 ribonuclease III, bacterial compare
Psest_1860 -0.8 -1.2 Uncharacterized conserved protein compare
Psest_2645 -0.8 -3.9 Transcriptional regulator compare
Psest_2766 -0.8 -1.1 hypothetical protein compare
Psest_2323 -0.7 -5.7 Uncharacterized protein conserved in archaea compare
Psest_4013 -0.7 -4.0 TRAP transporter, DctM subunit compare
Psest_3288 -0.7 -5.6 type IV-A pilus assembly ATPase PilB compare
Psest_2266 -0.7 -2.7 hypothetical protein compare
Psest_1716 -0.7 -3.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3862 -0.7 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3270 -0.7 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2946 -0.7 -2.1 septum site-determining protein MinD compare
Psest_2585 -0.7 -0.8 pseudouridylate synthase I compare
Psest_0285 -0.7 -4.9 pilus retraction protein PilT compare
Psest_1075 -0.7 -2.6 Predicted transcriptional regulators compare
Psest_1695 -0.7 -2.6 Tfp pilus assembly protein PilZ compare
Psest_2027 -0.7 -4.9 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0298 -0.7 -3.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0309 -0.6 -0.8 RND family efflux transporter, MFP subunit compare
Psest_0779 -0.6 -3.3 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_1920 -0.6 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3853 -0.6 -1.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0740 -0.6 -1.7 Transcriptional regulator compare
Psest_1260 -0.6 -3.0 type IV pilus biogenesis/stability protein PilW compare
Psest_0542 -0.6 -4.3 AMP nucleosidase compare
Psest_3806 -0.6 -3.8 Phosphomannomutase compare
Psest_1656 -0.6 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0300 -0.6 -4.4 Methyl-accepting chemotaxis protein compare
Psest_1132 -0.6 -1.9 mutator mutT protein compare
Psest_0266 -0.6 -2.6 thiamine biosynthesis protein ThiS compare
Psest_3419 -0.6 -3.0 Predicted transcriptional regulators compare
Psest_2955 -0.6 -1.1 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_2806 -0.6 -3.5 RNA polymerase sigma factor RpoS compare
Psest_3045 -0.6 -1.8 Cold shock proteins compare
Psest_1518 -0.6 -1.5 tRNA_Ser_CGA compare
Psest_3476 -0.6 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4405 -0.6 -1.6 hypothetical protein compare
Psest_4219 -0.6 -1.0 DNA polymerase I compare
Psest_0837 -0.6 -1.6 Putative lipid carrier protein compare
Psest_4085 -0.6 -4.4 Biotin carboxylase compare
Psest_1295 -0.6 -3.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3717 -0.6 -2.9 Tfp pilus assembly protein PilO compare
Psest_2726 -0.6 -1.0 Rhodanese-related sulfurtransferase compare
Psest_4335 -0.6 -1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1084 -0.6 -4.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_3573 -0.6 -2.8 dTDP-4-dehydrorhamnose reductase compare
Psest_3809 -0.6 -2.0 hypothetical protein compare
Psest_1179 -0.6 -1.1 2-hydroxy-3-oxopropionate reductase compare
Psest_1527 -0.6 -4.4 Na+/proline symporter compare
Psest_2001 -0.6 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2708 -0.6 -3.8 transaldolase compare
Psest_3872 -0.5 -3.5 FAD/FMN-containing dehydrogenases compare
Psest_1398 -0.5 -2.7 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3047 -0.5 -0.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1870 -0.5 -0.8 Transcriptional regulators compare
Psest_1724 -0.5 -2.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4243 -0.5 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0297 -0.5 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1111 -0.5 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4088 -0.5 -1.7 Transcriptional regulators compare
Psest_2643 -0.5 -1.3 Beta-glucosidase-related glycosidases compare
Psest_1506 -0.5 -2.2 queuosine biosynthesis protein QueC compare
Psest_1230 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1001 -0.5 -1.3 hypothetical protein compare
Psest_0207 -0.5 -1.3 hypothetical protein compare
Psest_4291 -0.5 -2.9 agmatine deiminase compare
Psest_2329 -0.5 -4.2 Transcriptional regulator compare
Psest_2061 -0.5 -2.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3839 -0.5 -2.6 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2999 -0.5 -2.3 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_4084 -0.5 -4.0 oxaloacetate decarboxylase alpha subunit compare
Psest_2123 -0.5 -1.0 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1293 -0.5 -1.1 VanZ like family. compare
Psest_1679 -0.5 -1.5 ribonuclease, Rne/Rng family compare
Psest_1486 -0.5 -1.7 hypothetical protein compare
Psest_3860 -0.5 -1.1 Predicted permeases compare
Psest_0514 -0.5 -2.8 lytic murein transglycosylase B compare
Psest_1067 -0.5 -2.1 hypothetical protein compare
Psest_2238 -0.5 -1.3 hypothetical protein compare
Psest_0537 -0.5 -0.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4258 -0.5 -1.8 ABC-type uncharacterized transport system, auxiliary component compare
Psest_3236 -0.5 -1.5 hypothetical protein compare
Psest_0100 -0.5 -2.6 phosphonate ABC transporter, ATP-binding protein compare
Psest_1660 -0.5 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1699 -0.5 -2.6 Selenocysteine lyase compare
Psest_0267 -0.5 -3.2 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0097 -0.5 -1.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4287 -0.5 -3.3 Predicted glutamine amidotransferases compare
Psest_2097 -0.5 -3.3 EamA-like transporter family. compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Isoleucine in Pseudomonas stutzeri RCH2

For carbon source L-Isoleucine across organisms