Experiment set12H14 for Pseudomonas stutzeri RCH2

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3648 -4.9 -7.5 anthranilate phosphoribosyltransferase compare
Psest_3299 -4.8 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2584 -4.7 -6.5 Phosphoribosylanthranilate isomerase compare
Psest_3650 -4.7 -12.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0155 -4.6 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3943 -4.5 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3944 -4.5 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0508 -4.4 -9.0 gamma-glutamyl phosphate reductase compare
Psest_3647 -4.3 -5.8 Indole-3-glycerol phosphate synthase compare
Psest_2123 -4.3 -3.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3384 -4.2 -9.3 glutamate 5-kinase compare
Psest_0062 -4.2 -11.1 tryptophan synthase, alpha subunit compare
Psest_0687 -4.2 -7.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3793 -4.1 -7.9 D-alanine dehydrogenase (EC 1.4.99.-) (from data) conserved
Psest_2988 -4.1 -6.8 aspartate kinase, monofunctional class compare
Psest_0558 -4.1 -1.4 urease, beta subunit compare
Psest_3298 -4.1 -12.3 histidinol dehydrogenase compare
Psest_0152 -3.9 -5.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_0063 -3.8 -11.2 tryptophan synthase, beta subunit compare
Psest_2845 -3.7 -11.6 [Protein-PII] uridylyltransferase compare
Psest_1505 -3.7 -3.3 Organic radical activating enzymes compare
Psest_3794 -3.6 -14.6 Transcriptional regulators conserved
Psest_1999 -3.5 -2.0 pseudouridine synthase compare
Psest_2766 -3.3 -1.6 hypothetical protein compare
Psest_2585 -2.9 -1.3 pseudouridylate synthase I compare
Psest_0280 -2.5 -11.9 homoserine O-acetyltransferase compare
Psest_0218 -2.5 -3.6 Acyl-CoA hydrolase compare
Psest_3864 -2.4 -11.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2579 -2.4 -3.3 amidophosphoribosyltransferase compare
Psest_1295 -2.4 -5.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3438 -2.4 -7.5 Glutamate dehydrogenase/leucine dehydrogenase conserved
Psest_2864 -2.4 -5.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0153 -2.3 -8.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0498 -2.3 -1.9 ribosome small subunit-dependent GTPase A compare
Psest_0279 -2.3 -5.4 methionine biosynthesis protein MetW compare
Psest_1496 -2.3 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1954 -2.2 -4.0 hypothetical protein compare
Psest_2122 -2.1 -1.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3803 -2.1 -1.3 DNA repair protein radc compare
Psest_3092 -2.0 -2.0 ribonuclease III, bacterial compare
Psest_1242 -2.0 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1012 -1.9 -3.9 Signal transduction histidine kinase compare
Psest_3419 -1.8 -5.8 Predicted transcriptional regulators compare
Psest_2088 -1.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0575 -1.7 -1.1 HrpA-like helicases compare
Psest_1313 -1.7 -1.7 Uncharacterized conserved small protein compare
Psest_3904 -1.7 -1.8 hypothetical protein compare
Psest_3962 -1.7 -1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_4084 -1.6 -9.4 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -1.6 -8.4 Biotin carboxylase compare
Psest_2590 -1.5 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_4098 -1.5 -2.9 Superfamily I DNA and RNA helicases compare
Psest_1955 -1.5 -4.4 Predicted membrane protein compare
Psest_0845 -1.5 -1.1 hypothetical protein compare
Psest_1986 -1.5 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1870 -1.5 -1.4 Transcriptional regulators compare
Psest_2018 -1.4 -2.3 Uncharacterized conserved protein compare
Psest_4191 -1.4 -2.7 Transcriptional regulator compare
Psest_0281 -1.4 -5.7 Dynamin family. compare
Psest_1013 -1.4 -1.4 phosphoribosylamine--glycine ligase compare
Psest_1366 -1.4 -1.4 hypothetical protein compare
Psest_0805 -1.4 -2.4 hypothetical protein compare
Psest_2578 -1.4 -6.8 O-succinylhomoserine sulfhydrylase compare
Psest_3767 -1.4 -3.6 tyrosine recombinase XerC compare
Psest_3932 -1.4 -4.3 nitrogen regulation protein NR(I) compare
Psest_2532 -1.3 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3185 -1.3 -1.7 MoxR-like ATPases compare
Psest_0312 -1.3 -4.2 Superfamily II DNA and RNA helicases compare
Psest_3818 -1.3 -3.8 endoribonuclease L-PSP, putative compare
Psest_4305 -1.3 -4.1 NAD-dependent aldehyde dehydrogenases compare
Psest_2591 -1.3 -1.7 3-isopropylmalate dehydratase, large subunit compare
Psest_2150 -1.3 -2.1 DNA polymerase LigD, polymerase domain compare
Psest_0313 -1.3 -4.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1527 -1.3 -7.0 Na+/proline symporter compare
Psest_2935 -1.2 -1.8 hypothetical protein compare
Psest_3351 -1.2 -3.5 peptide chain release factor 3 compare
Psest_3231 -1.2 -2.0 hypothetical protein compare
Psest_4307 -1.2 -2.2 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3002 -1.2 -1.4 Putative translation initiation inhibitor, yjgF family compare
Psest_1492 -1.2 -5.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3649 -1.2 -4.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3662 -1.2 -1.3 DnaJ-domain-containing proteins 1 compare
Psest_2435 -1.2 -3.6 Transcriptional regulator compare
Psest_3226 -1.1 -0.9 Predicted membrane protein compare
Psest_0718 -1.1 -2.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_2901 -1.1 -1.7 hypothetical protein compare
Psest_2940 -1.1 -1.7 Predicted membrane protein compare
Psest_1884 -1.1 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0998 -1.1 -1.8 poly(A) polymerase compare
Psest_3157 -1.1 -4.2 hypothetical protein compare
Psest_0487 -1.1 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1354 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3866 -1.1 -5.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3862 -1.1 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3317 -1.1 -2.4 Phosphotransferase System HPr (HPr) Family compare
Psest_0078 -1.0 -0.9 hypothetical protein compare
Psest_3031 -1.0 -0.7 hypothetical protein compare
Psest_3159 -1.0 -2.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0790 -1.0 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0376 -1.0 -2.2 glucarate dehydratase compare
Psest_1428 -1.0 -2.1 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_4102 -1.0 -1.9 peroxiredoxin, Ohr subfamily compare
Psest_3115 -1.0 -3.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2500 -1.0 -1.4 hypothetical protein compare
Psest_0737 -0.9 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_3692 -0.9 -2.5 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3377 -0.9 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2502 -0.9 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1804 -0.9 -1.1 Superfamily II DNA and RNA helicases compare
Psest_0209 -0.9 -1.3 membrane protein AbrB duplication compare
Psest_0969 -0.9 -1.1 transcription elongation factor GreA compare
Psest_1518 -0.9 -1.8 tRNA_Ser_CGA compare
Psest_2062 -0.9 -2.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1474 -0.9 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_3878 -0.9 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3908 -0.9 -1.0 Cytochrome c553 compare
Psest_1619 -0.9 -2.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_2133 -0.9 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_3477 -0.9 -2.8 Signal transduction histidine kinase compare
Psest_0334 -0.9 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4209 -0.9 -1.2 Uncharacterized conserved small protein compare
Psest_0547 -0.9 -2.6 Urease accessory protein UreF compare
Psest_1888 -0.9 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2096 -0.9 -1.8 Domain of unknown function (DUF1883). compare
Psest_2589 -0.9 -4.4 3-isopropylmalate dehydrogenase compare
Psest_0702 -0.9 -1.8 Methyl-accepting chemotaxis protein compare
Psest_0757 -0.9 -2.1 hypothetical protein compare
Psest_3045 -0.8 -0.8 Cold shock proteins compare
Psest_3123 -0.8 -0.8 dihydroorotase, homodimeric type compare
Psest_1457 -0.8 -1.2 FOG: Ankyrin repeat compare
Psest_1562 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1166 -0.8 -1.4 transcriptional regulator, ArgP family compare
Psest_2612 -0.8 -1.5 hypothetical protein compare
Psest_3496 -0.8 -0.7 Predicted metal-binding protein compare
Psest_0311 -0.8 -3.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1627 -0.8 -4.3 Superfamily II DNA and RNA helicases compare
Psest_0409 -0.8 -1.2 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0725 -0.8 -1.5 Negative regulator of beta-lactamase expression compare
Psest_0193 -0.8 -0.8 conserved hypothetical protein compare
Psest_4183 -0.8 -1.2 PilZ domain. compare
Psest_1058 -0.8 -1.1 ribosomal-protein-alanine acetyltransferase compare
Psest_4083 -0.8 -5.6 Predicted permease compare
Psest_3931 -0.8 -2.9 Signal transduction histidine kinase, nitrogen specific compare
Psest_4086 -0.8 -3.7 Transcriptional regulator compare
Psest_1103 -0.8 -2.0 GTP-binding protein YchF compare
Psest_3113 -0.8 -0.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2131 -0.8 -2.3 Acetyltransferases compare
Psest_1506 -0.8 -2.7 queuosine biosynthesis protein QueC compare
Psest_1464 -0.8 -3.2 Selenocysteine lyase compare
Psest_0401 -0.8 -1.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1006 -0.8 -3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_1080 -0.8 -3.9 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_0551 -0.8 -2.6 PEP phosphonomutase and related enzymes compare
Psest_0417 -0.8 -1.5 Acyl-CoA dehydrogenases compare
Psest_3988 -0.8 -3.0 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0389 -0.8 -2.3 hypothetical protein compare
Psest_1018 -0.8 -3.3 ribosomal protein L11 methyltransferase compare
Psest_3042 -0.8 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_2850 -0.8 -0.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2798 -0.8 -1.1 Truncated hemoglobins compare
Psest_2744 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_3921 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0837 -0.8 -1.4 Putative lipid carrier protein compare
Psest_1677 -0.8 -1.6 Protein-tyrosine-phosphatase compare
Psest_2090 -0.8 -1.8 Protein of unknown function (DUF2970). compare
Psest_1541 -0.8 -3.2 TIGR00370 family protein compare
Psest_1642 -0.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0367 -0.8 -0.5 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0118 -0.7 -2.5 Predicted membrane protein compare
Psest_0489 -0.7 -0.7 phosphoserine phosphatase SerB compare
Psest_0067 -0.7 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3536 -0.7 -1.0 hypothetical protein compare
Psest_2525 -0.7 -1.7 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_2425 -0.7 -1.6 Trk-type K+ transport systems, membrane components compare
Psest_2628 -0.7 -1.3 Flp pilus assembly protein, protease CpaA compare
Psest_4350 -0.7 -2.2 Transcriptional regulators of sugar metabolism compare
Psest_0691 -0.7 -4.2 ribonuclease R compare
Psest_2527 -0.7 -3.0 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4339 -0.7 -2.6 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Psest_0111 -0.7 -3.3 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2337 -0.7 -2.5 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Psest_3512 -0.7 -3.3 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_4151 -0.7 -1.7 Flagellar hook capping protein compare
Psest_3895 -0.7 -1.6 hypothetical protein compare
Psest_3519 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_0697 -0.7 -1.5 ribosomal protein L9 compare
Psest_3151 -0.7 -1.4 hypothetical protein compare
Psest_3927 -0.7 -1.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1388 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0886 -0.7 -2.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4370 -0.7 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1700 -0.7 -1.7 Transcriptional regulator compare
Psest_1510 -0.7 -1.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4158 -0.7 -1.3 Flagellar motor protein compare
Psest_4141 -0.7 -3.0 3-carboxymuconate cyclase compare
Psest_4285 -0.7 -2.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_3659 -0.7 -1.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4310 -0.7 -1.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1872 -0.7 -1.5 selT/selW/selH selenoprotein domain compare
Psest_3399 -0.7 -0.5 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Alanine in Pseudomonas stutzeri RCH2

For carbon source L-Alanine across organisms