Experiment set12H10 for Pseudomonas stutzeri RCH2

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.5 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0508 -6.9 -8.2 gamma-glutamyl phosphate reductase compare
Psest_3721 -6.7 -6.5 Malic enzyme compare
Psest_0153 -6.6 -9.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -6.6 -6.4 anthranilate phosphoribosyltransferase compare
Psest_0155 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1037 -6.4 -4.4 acetolactate synthase, small subunit compare
Psest_2578 -6.3 -11.4 O-succinylhomoserine sulfhydrylase compare
Psest_3298 -6.2 -8.5 histidinol dehydrogenase compare
Psest_0279 -6.2 -7.3 methionine biosynthesis protein MetW compare
Psest_3866 -6.1 -18.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3647 -6.0 -8.2 Indole-3-glycerol phosphate synthase compare
Psest_3650 -5.9 -15.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -5.8 -5.7 Phosphoribosylanthranilate isomerase compare
Psest_2590 -5.8 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psest_0062 -5.6 -15.4 tryptophan synthase, alpha subunit compare
Psest_0280 -5.5 -16.9 homoserine O-acetyltransferase compare
Psest_3299 -5.4 -15.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3864 -5.3 -15.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1473 -5.3 -6.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0152 -5.2 -8.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_0313 -5.1 -6.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3384 -5.1 -12.7 glutamate 5-kinase compare
Psest_0063 -5.1 -14.4 tryptophan synthase, beta subunit compare
Psest_3943 -5.1 -6.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2591 -4.8 -5.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3818 -4.8 -10.7 endoribonuclease L-PSP, putative compare
Psest_1772 -4.7 -5.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0687 -4.6 -11.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -4.3 -10.9 3-isopropylmalate dehydrogenase compare
Psest_0325 -4.2 -14.6 Putative threonine efflux protein compare
Psest_4081 -4.2 -8.5 Glutaminase (EC 3.5.1.2) (from data) conserved
Psest_2329 -3.9 -18.6 Transcriptional regulator compare
Psest_1686 -3.9 -6.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3305 -3.9 -10.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3303 -3.6 -6.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3649 -3.5 -9.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2088 -3.4 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_3998 -3.4 -9.9 glutamate--cysteine ligase compare
Psest_1012 -3.4 -5.6 Signal transduction histidine kinase compare
Psest_2579 -3.4 -3.3 amidophosphoribosyltransferase compare
Psest_2712 -3.4 -7.1 Surface lipoprotein compare
Psest_0498 -3.3 -3.0 ribosome small subunit-dependent GTPase A compare
Psest_1656 -3.3 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3226 -3.2 -2.0 Predicted membrane protein compare
Psest_3307 -3.1 -9.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4298 -3.1 -2.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1657 -2.9 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3304 -2.9 -7.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3297 -2.9 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3306 -2.9 -7.0 conserved hypothetical integral membrane protein compare
Psest_1295 -2.8 -7.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0248 -2.8 -9.0 Transcriptional regulator compare
Psest_1765 -2.7 -11.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4077 -2.7 -16.2 amino acid carrier protein compare
Psest_0999 -2.6 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0170 -2.6 -10.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_0417 -2.6 -3.0 Acyl-CoA dehydrogenases compare
Psest_2651 -2.5 -6.0 DNA topoisomerase I, bacterial compare
Psest_4097 -2.5 -13.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0466 -2.5 -5.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0445 -2.5 -14.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3322 -2.4 -18.6 TIGR02099 family protein compare
Psest_0326 -2.4 -7.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2324 -2.3 -16.1 hypothetical protein compare
Psest_1013 -2.2 -2.1 phosphoribosylamine--glycine ligase compare
Psest_0851 -2.2 -13.3 Transcriptional regulators compare
Psest_0718 -2.2 -6.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_1813 -2.1 -11.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0327 -2.1 -4.6 Transcriptional regulator compare
Psest_2232 -2.1 -12.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1474 -2.1 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_0489 -2.1 -1.4 phosphoserine phosphatase SerB compare
Psest_2323 -2.1 -14.0 Uncharacterized protein conserved in archaea compare
Psest_2325 -2.1 -12.1 alpha-L-glutamate ligase-related protein compare
Psest_1075 -2.0 -7.9 Predicted transcriptional regulators compare
Psest_1999 -2.0 -1.4 pseudouridine synthase compare
Psest_4191 -2.0 -4.1 Transcriptional regulator compare
Psest_2327 -1.9 -9.2 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3883 -1.9 -8.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0457 -1.9 -5.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1277 -1.9 -10.8 2-isopropylmalate synthase, yeast type compare
Psest_1814 -1.9 -13.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2316 -1.8 -12.0 phosphoenolpyruvate synthase compare
Psest_0993 -1.8 -8.9 Glucose-6-phosphate isomerase compare
Psest_0297 -1.8 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3159 -1.8 -6.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1660 -1.8 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1704 -1.8 -1.7 Dehydrogenases (flavoproteins) compare
Psest_4075 -1.8 -10.1 symporter for L-glutamate, L-glutamine, and L-proline (from data) conserved
Psest_2333 -1.8 -1.5 Protein of unknown function (DUF3359). compare
Psest_3810 -1.8 -1.2 orotate phosphoribosyltransferase compare
Psest_2862 -1.7 -8.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_4082 -1.7 -3.8 hypothetical protein compare
Psest_3301 -1.7 -2.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_1655 -1.7 -5.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1974 -1.7 -4.1 integration host factor, alpha subunit compare
Psest_1679 -1.6 -2.7 ribonuclease, Rne/Rng family compare
Psest_1163 -1.6 -5.2 diguanylate cyclase (GGDEF) domain compare
Psest_1659 -1.6 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2714 -1.6 -2.5 7-cyano-7-deazaguanine reductase compare
Psest_0411 -1.6 -9.3 biotin synthetase compare
Psest_3180 -1.6 -9.1 Exonuclease I compare
Psest_0442 -1.6 -2.1 ATPases of the AAA+ class compare
Psest_3988 -1.6 -7.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3228 -1.5 -8.3 Zn-dependent protease with chaperone function compare
Psest_1486 -1.5 -3.2 hypothetical protein compare
Psest_0520 -1.5 -1.3 hypothetical protein compare
Psest_3884 -1.5 -1.3 Signal transduction histidine kinase compare
Psest_1724 -1.5 -3.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3129 -1.5 -2.0 tyrosine recombinase XerD compare
Psest_0257 -1.5 -2.2 Predicted Zn-dependent peptidases compare
Psest_3458 -1.5 -3.3 hypothetical protein compare
Psest_2946 -1.5 -3.2 septum site-determining protein MinD compare
Psest_2090 -1.5 -4.2 Protein of unknown function (DUF2970). compare
Psest_2911 -1.5 -2.7 Protein of unknown function (DUF2945). compare
Psest_3042 -1.4 -1.9 Nitrate reductase cytochrome c-type subunit compare
Psest_0449 -1.4 -7.4 Glutamine synthetase adenylyltransferase compare
Psest_2945 -1.4 -1.8 septum site-determining protein MinC compare
Psest_0722 -1.4 -6.7 Predicted ATPase compare
Psest_3543 -1.4 -3.8 hypothetical protein compare
Psest_1661 -1.4 -2.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0182 -1.3 -6.5 glycine cleavage system H protein compare
Psest_4310 -1.3 -2.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1994 -1.3 -3.4 Amidases related to nicotinamidase compare
Psest_3537 -1.3 -6.6 hypothetical protein compare
Psest_3550 -1.3 -2.8 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0284 -1.3 -8.5 pyridoxal phosphate enzyme, YggS family compare
Psest_3768 -1.3 -4.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0697 -1.3 -3.5 ribosomal protein L9 compare
Psest_3664 -1.2 -1.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1957 -1.2 -7.8 outer membrane porin, OprD family. compare
Psest_0292 -1.2 -2.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0725 -1.2 -2.1 Negative regulator of beta-lactamase expression compare
Psest_1054 -1.2 -6.5 Diaminopimelate decarboxylase compare
Psest_1306 -1.2 -2.4 hypothetical protein compare
Psest_1510 -1.2 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1082 -1.2 -2.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0547 -1.2 -4.6 Urease accessory protein UreF compare
Psest_2810 -1.1 -4.8 5'/3'-nucleotidase SurE compare
Psest_4406 -1.1 -1.3 hypothetical protein compare
Psest_1000 -1.1 -5.8 PAS domain S-box compare
Psest_3691 -1.1 -6.2 Predicted membrane protein compare
Psest_1944 -1.1 -9.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) compare
Psest_2491 -1.1 -6.1 succinyl-CoA synthetase, beta subunit compare
Psest_2102 -1.1 -9.2 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_0998 -1.1 -3.1 poly(A) polymerase compare
Psest_0482 -1.1 -2.6 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_2490 -1.0 -6.0 succinyl-CoA synthetase, alpha subunit compare
Psest_2864 -1.0 -4.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4363 -1.0 -5.9 ATPases involved in chromosome partitioning compare
Psest_4088 -1.0 -2.4 Transcriptional regulators compare
Psest_3881 -1.0 -1.4 hypothetical protein compare
Psest_4098 -1.0 -1.8 Superfamily I DNA and RNA helicases compare
Psest_3323 -1.0 -3.3 ribonuclease, Rne/Rng family compare
Psest_3766 -1.0 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3926 -1.0 -7.1 GTP-binding protein TypA/BipA compare
Psest_2037 -1.0 -4.5 uroporphyrin-III C-methyltransferase compare
Psest_3419 -1.0 -5.3 Predicted transcriptional regulators compare
Psest_2312 -1.0 -5.2 Small-conductance mechanosensitive channel compare
Psest_2317 -1.0 -5.7 Uncharacterized protein conserved in bacteria compare
Psest_4044 -1.0 -2.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3123 -1.0 -1.6 dihydroorotase, homodimeric type compare
Psest_4090 -0.9 -2.0 diaminobutyrate acetyltransferase compare
Psest_0281 -0.9 -5.4 Dynamin family. compare
Psest_1947 -0.9 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0359 -0.9 -2.1 Transcriptional regulators compare
Psest_0709 -0.9 -5.8 pseudouridine synthase, RluA family compare
Psest_3536 -0.9 -1.2 hypothetical protein compare
Psest_1879 -0.9 -1.9 Trk-type K+ transport systems, membrane components compare
Psest_2454 -0.9 -1.4 Rhodanese-related sulfurtransferase compare
Psest_2872 -0.9 -1.3 protein RecA compare
Psest_1103 -0.9 -2.5 GTP-binding protein YchF compare
Psest_3502 -0.9 -2.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1881 -0.9 -3.8 Nitroreductase compare
Psest_1029 -0.9 -3.4 Regulator of competence-specific genes compare
Psest_3573 -0.9 -2.7 dTDP-4-dehydrorhamnose reductase compare
Psest_1804 -0.9 -1.3 Superfamily II DNA and RNA helicases compare
Psest_1505 -0.9 -1.5 Organic radical activating enzymes compare
Psest_0655 -0.8 -1.6 Chemotaxis signal transduction protein compare
Psest_2933 -0.8 -5.7 Signal transduction histidine kinase compare
Psest_3767 -0.8 -2.8 tyrosine recombinase XerC compare
Psest_1334 -0.8 -5.4 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Psest_0362 -0.8 -2.2 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3960 -0.8 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3146 -0.8 -1.3 hypothetical protein compare
Psest_3645 -0.8 -5.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0503 -0.8 -1.5 Acyl dehydratase compare
Psest_0193 -0.8 -1.1 conserved hypothetical protein compare
Psest_2643 -0.8 -1.6 Beta-glucosidase-related glycosidases compare
Psest_0207 -0.8 -1.9 hypothetical protein compare
Psest_3720 -0.8 -6.9 penicillin-binding protein, 1A family compare
Psest_1472 -0.8 -4.8 Protein of unknown function (DUF3108). compare
Psest_3995 -0.8 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3477 -0.8 -2.6 Signal transduction histidine kinase compare
Psest_0141 -0.8 -2.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0191 -0.8 -1.1 PAS domain S-box compare
Psest_3092 -0.8 -1.2 ribonuclease III, bacterial compare
Psest_0401 -0.8 -2.3 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4393 -0.8 -3.0 Capsule polysaccharide export protein compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source L-Glutamine in Pseudomonas stutzeri RCH2

For carbon source L-Glutamine across organisms