Experiment set11S566 for Pantoea sp. MT58

Compare to:

Ying_Nucleobase14 rep A; time point 3

200 most detrimental genes:

  gene name fitness t score description  
IAI47_00860 +2.8 24.5 DNA-binding transcriptional regulator CytR conserved
IAI47_08465 +2.0 14.7 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08455 +1.8 11.5 zinc ABC transporter permease subunit ZnuB compare
IAI47_08460 +1.7 12.3 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_16320 +1.5 9.6 DNA-binding transcriptional repressor DeoR compare
IAI47_12925 +1.5 5.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09550 +1.3 6.4 hypothetical protein compare
IAI47_13885 +1.2 2.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_13725 +1.2 6.4 cytochrome ubiquinol oxidase subunit I compare
IAI47_18215 +1.1 2.1 Trk system potassium transporter TrkH compare
IAI47_21610 +1.0 7.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_00870 +1.0 1.0 50S ribosomal protein L31 compare
IAI47_12930 +0.9 3.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_13720 +0.9 3.8 cytochrome d ubiquinol oxidase subunit II compare
IAI47_10825 +0.9 1.7 tRNA-Val compare
IAI47_08280 +0.9 6.3 flagellar transcriptional regulator FlhD compare
IAI47_06675 +0.9 2.3 DUF1232 domain-containing protein compare
IAI47_11415 +0.8 1.0 hypothetical protein compare
IAI47_06900 +0.8 2.0 phosphatase PAP2 family protein compare
IAI47_08285 +0.8 5.9 flagellar transcriptional regulator FlhC compare
IAI47_14350 +0.8 4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_02600 +0.8 5.7 FtsH protease activity modulator HflK compare
IAI47_18470 +0.8 6.4 ECA oligosaccharide polymerase compare
IAI47_07025 +0.8 3.5 glycosyltransferase family 4 protein compare
IAI47_05275 +0.8 4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_10565 +0.7 1.0 DUF4113 domain-containing protein compare
IAI47_02605 +0.7 5.8 protease modulator HflC compare
IAI47_15425 +0.7 3.2 Rho-binding antiterminator compare
IAI47_07250 +0.7 2.0 tRNA-Asn compare
IAI47_11535 +0.7 1.4 DcrB-related protein compare
IAI47_10835 +0.7 0.7 tRNA-Val compare
IAI47_06550 +0.7 2.4 hypothetical protein compare
IAI47_02710 +0.7 6.0 HlyC/CorC family transporter compare
IAI47_08105 +0.7 1.7 DinI family protein compare
IAI47_20065 +0.7 3.3 YebG family protein compare
IAI47_21600 +0.7 1.2 EamA family transporter compare
IAI47_05050 +0.7 3.3 cytoskeleton protein RodZ compare
IAI47_18715 +0.6 1.1 YibL family ribosome-associated protein compare
IAI47_07790 +0.6 1.5 ribose 1,5-bisphosphokinase compare
IAI47_07905 +0.6 0.6 Arc family DNA-binding protein compare
IAI47_08335 +0.6 3.9 chemotaxis response regulator CheY compare
IAI47_07930 +0.6 1.2 DUF2158 domain-containing protein compare
IAI47_21595 +0.6 4.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_09900 +0.6 1.9 type II toxin-antitoxin system antitoxin HipB compare
IAI47_14210 +0.6 2.3 hypothetical protein compare
IAI47_16340 +0.6 5.4 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
IAI47_10430 +0.6 1.5 hypothetical protein compare
IAI47_08325 +0.6 4.3 protein-glutamate O-methyltransferase CheR compare
IAI47_08040 +0.6 1.3 hypothetical protein compare
IAI47_06275 +0.6 5.2 amidophosphoribosyltransferase compare
IAI47_11210 +0.6 4.2 type VI secretion system-associated protein TagF compare
IAI47_06165 +0.6 3.7 elongation factor P hydroxylase compare
IAI47_11220 +0.6 3.2 serine/threonine-protein phosphatase compare
IAI47_19690 +0.6 1.0 hypothetical protein compare
IAI47_15605 +0.6 0.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_12135 +0.6 4.8 flagellar basal body L-ring protein FlgH compare
IAI47_09675 +0.6 1.7 YoaK family small membrane protein compare
IAI47_15995 +0.6 0.7 leu operon leader peptide compare
IAI47_06455 +0.6 2.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_05185 +0.6 2.4 uracil phosphoribosyltransferase compare
IAI47_21235 +0.6 1.5 hypothetical protein compare
IAI47_16995 +0.6 1.0 protein YrbN compare
IAI47_21605 +0.6 4.8 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_00760 +0.5 1.6 envelope stress response regulator transcription factor CpxR compare
IAI47_12130 +0.5 4.3 flagellar basal body P-ring protein FlgI compare
IAI47_09380 +0.5 3.3 peptide ABC transporter substrate-binding protein SapA compare
IAI47_17205 +0.5 0.6 PTS phosphocarrier protein NPr compare
IAI47_14555 +0.5 1.2 hemolysin expression modulator Hha compare
IAI47_11675 +0.5 3.6 type VI secretion system-associated protein TagF compare
IAI47_07030 +0.5 3.0 HAD family hydrolase compare
IAI47_14355 +0.5 3.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_07005 +0.5 2.1 glycosyltransferase family 4 protein compare
IAI47_07980 +0.5 3.2 flagellar type III secretion system pore protein FliP compare
IAI47_10820 +0.5 4.2 MATE family efflux transporter compare
IAI47_12790 +0.5 0.5 chromosome partition protein MukE compare
IAI47_07480 +0.5 1.1 hypothetical protein compare
IAI47_08845 +0.5 1.2 cell division topological specificity factor MinE compare
IAI47_01750 +0.5 2.3 glycerol-3-phosphate dehydrogenase compare
IAI47_18265 +0.5 1.1 Sec-independent protein translocase subunit TatB compare
IAI47_19245 +0.5 1.6 SIS domain-containing protein compare
IAI47_05700 +0.5 2.2 hypothetical protein compare
IAI47_04930 +0.5 4.3 phosphoribosylformylglycinamidine synthase compare
IAI47_12155 +0.5 3.6 flagellar hook assembly protein FlgD compare
IAI47_08015 +0.5 3.3 flagellum-specific ATP synthase FliI compare
IAI47_00825 +0.5 4.1 glycerol kinase GlpK compare
IAI47_00885 +0.5 4.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_13075 +0.5 2.9 hypothetical protein compare
IAI47_12140 +0.5 2.9 flagellar basal-body rod protein FlgG compare
IAI47_12375 +0.5 0.9 acyl carrier protein compare
IAI47_06115 +0.5 4.0 long-chain fatty acid transporter FadL compare
IAI47_14170 +0.5 1.7 hypothetical protein compare
IAI47_18250 +0.5 2.6 transcription/translation regulatory transformer protein RfaH compare
IAI47_09040 +0.5 0.6 NAD-dependent epimerase compare
IAI47_07995 +0.5 3.5 flagellar motor switch protein FliM compare
IAI47_12160 +0.5 3.0 flagellar basal body rod protein FlgC compare
IAI47_14145 +0.5 2.3 hypothetical protein compare
IAI47_18045 +0.5 2.9 phosphoribosylamine--glycine ligase compare
IAI47_09845 +0.5 1.9 hypothetical protein compare
IAI47_08670 +0.5 1.0 DUF1272 domain-containing protein compare
IAI47_16430 +0.4 1.7 histidine phosphatase family protein compare
IAI47_15140 +0.4 2.3 xanthine phosphoribosyltransferase compare
IAI47_11685 +0.4 3.1 DotU family type VI secretion system protein compare
IAI47_20250 +0.4 1.2 DeoR family transcriptional regulator compare
IAI47_12125 +0.4 3.1 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_13405 +0.4 2.9 DedA family protein compare
IAI47_08815 +0.4 1.5 hypothetical protein compare
IAI47_05745 +0.4 0.7 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_16955 +0.4 2.2 N-acetyltransferase compare
IAI47_12165 +0.4 2.7 flagellar basal body rod protein FlgB compare
IAI47_00445 +0.4 3.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_13975 +0.4 3.1 amino acid ABC transporter permease compare
IAI47_12195 +0.4 2.0 DUF480 domain-containing protein compare
IAI47_05705 +0.4 2.0 DNA polymerase III subunit theta compare
IAI47_18930 +0.4 1.6 carboxymuconolactone decarboxylase family protein compare
IAI47_06500 +0.4 3.0 TolC family outer membrane protein compare
IAI47_01545 +0.4 1.7 cell division ATP-binding protein FtsE compare
IAI47_10755 +0.4 1.0 DUF1289 domain-containing protein compare
IAI47_08550 +0.4 2.1 hypothetical protein compare
IAI47_13980 +0.4 3.0 glutamate/aspartate ABC transporter permease GltK compare
IAI47_08900 +0.4 3.3 multidrug effflux MFS transporter compare
IAI47_15105 +0.4 1.5 hypothetical protein compare
IAI47_06145 +0.4 2.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
IAI47_08145 +0.4 3.7 flagellin FliC compare
IAI47_08305 +0.4 2.5 chemotaxis protein CheW compare
IAI47_04100 +0.4 2.4 2-hydroxy-3-oxopropionate reductase compare
IAI47_15595 +0.4 0.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_05180 +0.4 3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_01560 +0.4 2.2 aspartate 1-decarboxylase autocleavage activator PanM compare
IAI47_08300 +0.4 3.2 chemotaxis protein CheA compare
IAI47_12245 +0.4 2.0 YceI family protein compare
IAI47_15065 +0.4 2.5 chemotaxis protein CheV compare
IAI47_03920 +0.4 3.3 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_08350 +0.4 2.9 flagellar biosynthesis protein FlhA compare
IAI47_08590 +0.4 1.5 hypothetical protein compare
IAI47_11445 +0.4 2.1 ankyrin repeat domain-containing protein compare
IAI47_14910 +0.4 2.1 recombination-associated protein RdgC compare
IAI47_05460 +0.4 2.2 DUF3820 family protein compare
IAI47_09445 +0.4 2.4 thiol peroxidase compare
IAI47_00670 +0.4 3.5 sugar glycosyltransferase compare
IAI47_03400 +0.4 2.1 deoxyribose-phosphate aldolase compare
IAI47_13050 +0.4 1.5 YbjN domain-containing protein compare
IAI47_14190 +0.4 1.2 DUF2171 domain-containing protein compare
IAI47_11300 +0.4 1.8 stress-induced protein YchH compare
IAI47_00440 +0.4 2.2 Der GTPase-activating protein YihI compare
IAI47_21665 +0.4 0.9 DUF333 domain-containing protein compare
IAI47_11850 +0.4 1.6 hypothetical protein compare
IAI47_17880 +0.4 1.7 CsbD family protein compare
IAI47_00375 +0.4 3.4 ribose operon transcriptional repressor RbsR compare
IAI47_02455 +0.4 3.0 ribonuclease G compare
IAI47_11180 +0.4 2.1 nitrate ABC transporter permease compare
IAI47_16425 +0.4 2.5 MHS family MFS transporter compare
IAI47_08345 +0.4 3.0 flagellar type III secretion system protein FlhB compare
IAI47_06510 +0.4 2.9 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_13925 +0.4 0.8 tRNA-Met compare
IAI47_18580 +0.4 3.1 insulinase family protein compare
IAI47_09755 +0.4 2.5 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_11540 +0.4 1.3 type VI secretion system tip protein VgrG compare
IAI47_00840 +0.4 1.5 ribonuclease E activity regulator RraA compare
IAI47_16095 +0.4 1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_07975 +0.4 1.5 flagellar biosynthesis protein FliQ compare
IAI47_00370 +0.4 3.1 ribokinase compare
IAI47_06490 +0.4 3.5 Ig-like domain-containing protein compare
IAI47_04030 +0.4 2.5 DUF423 domain-containing protein compare
IAI47_17475 +0.4 1.7 type VI secretion system contractile sheath small subunit compare
IAI47_20625 +0.4 1.1 DUF2946 domain-containing protein compare
IAI47_18520 +0.4 3.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_21180 +0.4 1.1 IS6 family transposase compare
IAI47_01135 +0.4 0.3 hypothetical protein compare
IAI47_07985 +0.4 2.2 flagellar biosynthetic protein FliO compare
IAI47_04940 +0.4 2.4 two-component system QseEF-associated lipoprotein QseG compare
IAI47_09580 +0.4 1.5 FNR family transcription factor compare
IAI47_11610 +0.4 2.2 serine/threonine-protein phosphatase compare
IAI47_17870 +0.3 3.1 conjugal transfer protein TraF compare
IAI47_13330 +0.3 2.5 ABC transporter substrate-binding protein compare
IAI47_00830 +0.3 2.7 aquaporin family protein compare
IAI47_08005 +0.3 2.3 flagellar hook-length control protein FliK compare
IAI47_09435 +0.3 2.3 GtrA family protein compare
IAI47_12150 +0.3 2.8 flagellar hook protein FlgE compare
IAI47_02095 +0.3 1.4 bacterioferritin-associated ferredoxin compare
IAI47_06995 +0.3 2.5 UTP--glucose-1-phosphate uridylyltransferase GalF compare
IAI47_03810 +0.3 1.7 hypothetical protein compare
IAI47_00120 +0.3 1.8 sugar kinase compare
IAI47_13070 +0.3 2.0 GrxA family glutaredoxin compare
IAI47_12730 +0.3 1.9 FMNH2-dependent alkanesulfonate monooxygenase compare
IAI47_08020 +0.3 2.3 flagellar assembly protein FliH compare
IAI47_11695 +0.3 1.7 type VI secretion system lipoprotein TssJ compare
IAI47_05210 +0.3 1.8 DsrE family protein compare
IAI47_08765 +0.3 2.1 PTS mannose/fructose/sorbose transporter subunit IIC compare
IAI47_06505 +0.3 2.7 type I secretion system permease/ATPase compare
IAI47_20875 +0.3 2.0 glutathione peroxidase compare
IAI47_21145 +0.3 1.9 hypothetical protein compare
IAI47_16685 +0.3 1.6 DUF2501 domain-containing protein compare
IAI47_07700 +0.3 1.1 EAL domain-containing protein compare
IAI47_05045 +0.3 2.2 type IV pilus biogenesis/stability protein PilW compare
IAI47_09275 +0.3 1.9 orotidine-5'-phosphate decarboxylase compare
IAI47_03950 +0.3 1.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_21385 +0.3 1.8 DNA polymerase V subunit compare
IAI47_07000 +0.3 2.3 UDP-glucose 4-epimerase GalE compare
IAI47_12520 +0.3 1.8 pyrimidine utilization protein C compare
IAI47_18765 +0.3 1.3 damage-inducible protein J compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source Ying_Nucleobase14 in Pantoea sp. MT58

For carbon source Ying_Nucleobase14 across organisms