Experiment set11S563 for Pantoea sp. MT58

Compare to:

Ying_OrganicAcid7 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
IAI47_16210 -5.0 -3.5 homoserine kinase compare
IAI47_07090 -4.9 -3.4 histidinol dehydrogenase compare
IAI47_16010 -4.8 -4.7 3-isopropylmalate dehydratase large subunit compare
IAI47_09180 -4.8 -5.7 anthranilate phosphoribosyltransferase compare
IAI47_06275 -4.8 -5.7 amidophosphoribosyltransferase compare
IAI47_01040 -4.7 -4.6 threonine ammonia-lyase, biosynthetic compare
IAI47_13180 -4.7 -3.2 manganese-binding transcriptional regulator MntR compare
IAI47_07085 -4.7 -3.2 histidinol-phosphate transaminase compare
IAI47_05275 -4.7 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_07060 -4.7 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_09190 -4.6 -5.5 anthranilate synthase component 1 compare
IAI47_09175 -4.6 -6.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_17225 -4.6 -4.5 sulfite reductase subunit alpha compare
IAI47_00915 -4.6 -7.0 argininosuccinate synthase compare
IAI47_09165 -4.6 -3.2 tryptophan synthase subunit alpha compare
IAI47_03725 -4.6 -5.4 phosphoglycerate dehydrogenase compare
IAI47_17220 -4.6 -5.4 glutamate synthase large subunit compare
IAI47_09170 -4.5 -6.9 tryptophan synthase subunit beta compare
IAI47_01030 -4.5 -3.1 branched-chain amino acid transaminase compare
IAI47_00920 -4.5 -3.1 argininosuccinate lyase compare
IAI47_00600 -4.5 -3.1 orotate phosphoribosyltransferase compare
IAI47_07070 -4.5 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_01035 -4.5 -3.1 dihydroxy-acid dehydratase compare
IAI47_04930 -4.4 -6.8 phosphoribosylformylglycinamidine synthase compare
IAI47_16215 -4.4 -6.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_16860 -4.4 -5.2 aspartate carbamoyltransferase compare
IAI47_16005 -4.4 -6.0 3-isopropylmalate dehydrogenase compare
IAI47_09275 -4.4 -4.2 orotidine-5'-phosphate decarboxylase compare
IAI47_12705 -4.4 -4.2 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_12215 -4.3 -4.2 dihydroorotase compare
IAI47_07065 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16205 -4.3 -3.0 threonine synthase compare
IAI47_18045 -4.3 -3.0 phosphoribosylamine--glycine ligase compare
IAI47_05180 -4.3 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_03860 -4.3 -3.0 diaminopimelate decarboxylase compare
IAI47_13900 -4.3 -4.2 asparagine synthase B compare
IAI47_16115 -4.3 -13.9 carbamoyl-phosphate synthase large subunit compare
IAI47_18015 -4.3 -5.1 homoserine O-succinyltransferase compare
IAI47_07095 -4.3 -9.0 ATP phosphoribosyltransferase compare
IAI47_16350 -4.2 -2.9 phosphoserine phosphatase compare
IAI47_09185 -4.2 -4.1 glutamine amidotransferase compare
IAI47_00880 -4.2 -4.1 cystathionine gamma-synthase compare
IAI47_16015 -4.2 -2.9 3-isopropylmalate dehydratase small subunit compare
IAI47_07080 -4.2 -2.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18040 -4.2 -7.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_16000 -4.2 -15.0 2-isopropylmalate synthase compare
IAI47_14355 -4.2 -2.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_16870 -4.2 -5.7 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_05440 -4.2 -6.3 cysteine synthase A compare
IAI47_01050 -4.1 -2.9 ketol-acid reductoisomerase compare
IAI47_12865 -4.1 -2.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_04155 -4.1 -8.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_14350 -4.1 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_07075 -4.0 -6.1 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_11930 -4.0 -2.7 two-component system response regulator PhoP compare
IAI47_04160 -4.0 -3.9 phosphoadenylyl-sulfate reductase compare
IAI47_02750 -3.9 -3.8 class 1 fructose-bisphosphatase compare
IAI47_13770 -3.9 -5.9 citrate synthase compare
IAI47_03730 -3.9 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_12915 -3.9 -6.9 leucine-responsive transcriptional regulator Lrp compare
IAI47_04150 -3.8 -10.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_13685 -3.8 -2.6 Tol-Pal system protein TolB compare
IAI47_02695 -3.8 -8.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_16390 -3.8 -1.6 tRNA-Leu compare
IAI47_18530 -3.8 -3.6 thioredoxin TrxA compare
IAI47_04410 -3.7 -15.7 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_16120 -3.7 -11.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_04190 -3.6 -6.7 adenylyl-sulfate kinase compare
IAI47_11935 -3.5 -13.6 two-component system sensor histidine kinase PhoQ compare
IAI47_08355 -3.5 -5.2 flagellar protein FlhE compare
IAI47_15115 -3.5 -2.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_17965 -3.5 -12.5 glucose-6-phosphate isomerase compare
IAI47_04180 -3.4 -12.5 sulfate adenylyltransferase subunit CysD compare
IAI47_04185 -3.4 -15.1 sulfate adenylyltransferase subunit CysN compare
IAI47_15635 -3.4 -2.3 RNA polymerase-binding protein DksA compare
IAI47_17185 -3.3 -2.3 RNA polymerase factor sigma-54 compare
IAI47_00455 -3.2 -9.6 nitrogen regulation protein NR(II) compare
IAI47_06115 -3.2 -18.0 long-chain fatty acid transporter FadL compare
IAI47_08165 -3.2 -9.2 flagella biosynthesis regulatory protein FliZ compare
IAI47_15980 -3.1 -11.3 catabolite repressor/activator compare
IAI47_04175 -3.1 -10.0 uroporphyrinogen-III C-methyltransferase compare
IAI47_13745 -3.1 -2.1 2-oxoglutarate dehydrogenase E1 component compare
IAI47_01025 -3.1 -10.2 acetolactate synthase 2 small subunit compare
IAI47_17250 -3.1 -12.5 cell division protein ZapE compare
IAI47_15120 -3.1 -2.1 glutamate 5-kinase compare
IAI47_13765 -3.0 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_01020 -3.0 -15.1 acetolactate synthase 2 catalytic subunit compare
IAI47_00450 -3.0 -14.1 nitrogen regulation protein NR(I) compare
IAI47_12645 -2.9 -2.0 porin OmpA compare
IAI47_06410 -2.9 -4.0 NADH-quinone oxidoreductase subunit L compare
IAI47_08705 -2.9 -11.6 carboxy terminal-processing peptidase compare
IAI47_06400 -2.9 -2.0 NADH-quinone oxidoreductase subunit J compare
IAI47_01780 -2.8 -1.9 Fe-S biogenesis protein NfuA compare
IAI47_06385 -2.8 -2.7 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_13755 -2.8 -1.9 succinate dehydrogenase flavoprotein subunit compare
IAI47_03855 -2.8 -8.5 LysR family transcriptional regulator compare
IAI47_14945 -2.8 -1.9 pyrroline-5-carboxylate reductase compare
IAI47_17235 -2.7 -13.7 stringent starvation protein A compare
IAI47_18585 -2.7 -15.9 dicarboxylate/amino acid:cation symporter conserved
IAI47_00515 -2.7 -1.8 DNA-directed RNA polymerase subunit omega compare
IAI47_05420 -2.7 -1.7 PTS glucose transporter subunit IIA compare
IAI47_13760 -2.6 -1.8 succinate dehydrogenase membrane anchor subunit compare
IAI47_00300 -2.6 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_13750 -2.6 -1.8 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06390 -2.6 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_06420 -2.5 -3.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_06415 -2.5 -2.4 NADH-quinone oxidoreductase subunit M compare
IAI47_00875 -2.5 -2.3 met regulon transcriptional regulator MetJ compare
IAI47_06405 -2.5 -1.7 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_03150 -2.5 -12.7 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_06365 -2.5 -3.3 NADH-quinone oxidoreductase subunit B compare
IAI47_14690 -2.4 -5.3 cytochrome o ubiquinol oxidase subunit III compare
IAI47_07165 -2.4 -2.7 exodeoxyribonuclease I compare
IAI47_00935 -2.4 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_05390 -2.4 -7.4 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_05395 -2.4 -12.6 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_14700 -2.4 -5.6 protoheme IX farnesyltransferase compare
IAI47_14730 -2.4 -1.9 exodeoxyribonuclease VII small subunit compare
IAI47_04605 -2.4 -12.1 magnesium-translocating P-type ATPase compare
IAI47_12920 -2.4 -4.5 thioredoxin-disulfide reductase compare
IAI47_06380 -2.4 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_08440 -2.3 -3.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_14685 -2.3 -9.3 cytochrome o ubiquinol oxidase subunit I compare
IAI47_18400 -2.3 -2.2 tyrosine recombinase XerC compare
IAI47_01365 -2.3 -2.6 inorganic phosphate transporter PitA compare
IAI47_03805 -2.3 -4.0 FAD assembly factor SdhE compare
IAI47_05400 -2.3 -9.1 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_06370 -2.2 -4.6 NADH-quinone oxidoreductase subunit C/D compare
IAI47_05035 -2.2 -3.5 nucleoside-diphosphate kinase compare
IAI47_04895 -2.2 -4.1 pyridoxine 5'-phosphate synthase compare
IAI47_08445 -2.1 -1.9 Holliday junction branch migration protein RuvA compare
IAI47_05465 -2.1 -6.2 bile acid:sodium symporter compare
IAI47_05090 -2.1 -5.2 hypothetical protein compare
IAI47_14695 -2.1 -4.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_14680 -2.1 -4.7 cytochrome o ubiquinol oxidase subunit II compare
IAI47_17035 -2.1 -3.2 ribosome maturation factor RimP compare
IAI47_05385 -2.0 -13.9 sulfate ABC transporter substrate-binding protein compare
IAI47_05195 -2.0 -2.9 DnaA inactivator Hda compare
IAI47_00785 -2.0 -14.1 sulfate ABC transporter substrate-binding protein compare
IAI47_15110 -2.0 -5.1 chromophore lyase compare
IAI47_07020 -2.0 -2.2 hypothetical protein compare
IAI47_17005 -2.0 -6.5 polyribonucleotide nucleotidyltransferase compare
IAI47_01005 -2.0 -12.1 DUF413 domain-containing protein compare
IAI47_13740 -1.9 -1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_09245 -1.9 -3.8 YmiA family putative membrane protein compare
IAI47_12765 -1.9 -11.0 aspartate/tyrosine/aromatic aminotransferase compare
IAI47_06245 -1.9 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03820 -1.8 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_20415 -1.8 -10.0 two-component system response regulator DcuR conserved
IAI47_09235 -1.8 -2.0 type I DNA topoisomerase compare
IAI47_06135 -1.8 -5.0 phosphohistidine phosphatase SixA compare
IAI47_09305 -1.8 -1.2 cyclic di-GMP phosphodiesterase compare
IAI47_09010 -1.8 -8.7 formyltetrahydrofolate deformylase compare
IAI47_05070 -1.8 -0.7 outer membrane protein assembly factor BamB compare
IAI47_06475 -1.8 -5.2 transcriptional regulator RcsB compare
IAI47_13155 -1.8 -2.7 H-NS histone family protein compare
IAI47_18315 -1.8 -7.1 HTH-type transcriptional regulator MetR compare
IAI47_01120 -1.8 -8.7 manganese efflux pump MntP compare
IAI47_02090 -1.7 -3.3 elongation factor Tu compare
IAI47_06055 -1.7 -4.4 tRNA-Arg compare
IAI47_06355 -1.7 -7.6 transcriptional regulator LrhA compare
IAI47_01830 -1.7 -11.1 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_18405 -1.6 -5.3 DUF484 domain-containing protein compare
IAI47_18540 -1.6 -7.4 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_14775 -1.6 -4.4 transcriptional regulator NrdR compare
IAI47_12760 -1.6 -9.9 porin OmpF compare
IAI47_09240 -1.6 -1.1 HTH-type transcriptional regulator CysB compare
IAI47_17000 -1.6 -9.4 lipoprotein NlpI compare
IAI47_01000 -1.5 -11.5 HTH-type transcriptional regulator HdfR compare
IAI47_16085 -1.5 -2.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15540 -1.5 -9.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_15605 -1.5 -1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_08955 -1.5 -7.5 DUF1315 family protein compare
IAI47_08450 -1.5 -3.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_08410 -1.5 -5.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_00735 -1.5 -1.6 protein-export chaperone SecB compare
IAI47_04800 -1.5 -1.2 RnfH family protein compare
IAI47_15810 -1.5 -1.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_01475 -1.5 -6.7 MurR/RpiR family transcriptional regulator compare
IAI47_13310 -1.5 -5.0 MerR family transcriptional regulator compare
IAI47_18830 -1.5 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_10905 -1.5 -10.3 phosphoenolpyruvate synthase conserved
IAI47_13690 -1.4 -0.5 cell envelope integrity protein TolA compare
IAI47_14670 -1.4 -10.0 hypothetical protein compare
IAI47_13695 -1.4 -0.5 colicin uptake protein TolR compare
IAI47_06395 -1.4 -1.3 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_03905 -1.4 -8.9 TerC family protein compare
IAI47_00755 -1.4 -9.1 envelope stress sensor histidine kinase CpxA compare
IAI47_00460 -1.4 -0.9 glutamate--ammonia ligase compare
IAI47_04225 -1.4 -7.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
IAI47_03610 -1.3 -3.6 YqgE/AlgH family protein compare
IAI47_05510 -1.3 -8.4 putative DNA-binding transcriptional regulator compare
IAI47_21880 -1.3 -0.6 ParA family protein compare
IAI47_12410 -1.2 -4.5 MarR family transcriptional regulator compare
IAI47_06235 -1.2 -5.3 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_06210 -1.2 -8.3 tripartite tricarboxylate transporter substrate binding protein compare
IAI47_06220 -1.2 -8.6 sensor histidine kinase compare
IAI47_09550 -1.1 -3.9 hypothetical protein compare
IAI47_10925 -1.1 -2.7 EAL domain-containing protein compare
IAI47_00655 -1.1 -1.9 glycosyltransferase family 4 protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pantoea sp. MT58

For carbon source Ying_OrganicAcid7 across organisms