Experiment set11S562 for Pantoea sp. MT58

Compare to:

Ying_AminoAcid20 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
IAI47_06275 -5.0 -3.5 amidophosphoribosyltransferase compare
IAI47_16115 -4.9 -3.4 carbamoyl-phosphate synthase large subunit compare
IAI47_13180 -4.9 -3.4 manganese-binding transcriptional regulator MntR compare
IAI47_05275 -4.9 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_16120 -4.9 -3.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00600 -4.7 -3.3 orotate phosphoribosyltransferase compare
IAI47_04930 -4.7 -4.6 phosphoribosylformylglycinamidine synthase compare
IAI47_16860 -4.6 -3.2 aspartate carbamoyltransferase compare
IAI47_09275 -4.6 -3.2 orotidine-5'-phosphate decarboxylase compare
IAI47_12705 -4.6 -3.2 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_17965 -4.5 -5.4 glucose-6-phosphate isomerase compare
IAI47_05180 -4.5 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_18045 -4.5 -4.4 phosphoribosylamine--glycine ligase compare
IAI47_12215 -4.5 -5.3 dihydroorotase compare
IAI47_18040 -4.5 -5.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_14355 -4.4 -4.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_08440 -4.3 -2.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_14350 -4.3 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_08085 -4.2 -4.1 helix-turn-helix domain-containing protein compare
IAI47_11930 -4.2 -2.9 two-component system response regulator PhoP compare
IAI47_02750 -4.1 -4.0 class 1 fructose-bisphosphatase compare
IAI47_08705 -4.1 -2.8 carboxy terminal-processing peptidase compare
IAI47_13685 -4.0 -2.7 Tol-Pal system protein TolB compare
IAI47_10845 -3.7 -3.6 major outer membrane lipoprotein compare
IAI47_13770 -3.7 -9.0 citrate synthase compare
IAI47_08165 -3.7 -8.5 flagella biosynthesis regulatory protein FliZ compare
IAI47_15115 -3.6 -6.0 glutamate-5-semialdehyde dehydrogenase compare
IAI47_05090 -3.6 -5.8 hypothetical protein compare
IAI47_01120 -3.4 -11.4 manganese efflux pump MntP compare
IAI47_11935 -3.3 -15.2 two-component system sensor histidine kinase PhoQ compare
IAI47_13745 -3.3 -2.3 2-oxoglutarate dehydrogenase E1 component compare
IAI47_06410 -3.3 -2.3 NADH-quinone oxidoreductase subunit L compare
IAI47_00655 -3.3 -3.8 glycosyltransferase family 4 protein compare
IAI47_11830 -3.3 -10.1 muramoyltetrapeptide carboxypeptidase compare
IAI47_06475 -3.3 -5.0 transcriptional regulator RcsB compare
IAI47_15120 -3.3 -3.2 glutamate 5-kinase compare
IAI47_16420 -3.3 -17.7 LacI family DNA-binding transcriptional regulator compare
IAI47_13900 -3.3 -16.0 asparagine synthase B compare
IAI47_06390 -3.3 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_06420 -3.3 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_13765 -3.2 -2.2 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_07165 -3.2 -2.2 exodeoxyribonuclease I compare
IAI47_08450 -3.2 -3.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06365 -3.2 -2.2 NADH-quinone oxidoreductase subunit B compare
IAI47_04105 -3.2 -10.7 glycerate kinase compare
IAI47_17000 -3.2 -12.1 lipoprotein NlpI compare
IAI47_06385 -3.1 -2.2 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_12645 -3.1 -2.1 porin OmpA compare
IAI47_06400 -3.1 -2.1 NADH-quinone oxidoreductase subunit J compare
IAI47_13755 -3.0 -2.1 succinate dehydrogenase flavoprotein subunit compare
IAI47_12865 -3.0 -12.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_02515 -3.0 -7.0 transcriptional regulator ArgR compare
IAI47_03730 -3.0 -11.9 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_20110 -3.0 -14.3 Glu/Leu/Phe/Val dehydrogenase compare
IAI47_17035 -3.0 -3.4 ribosome maturation factor RimP compare
IAI47_04605 -2.9 -15.4 magnesium-translocating P-type ATPase compare
IAI47_08445 -2.9 -1.9 Holliday junction branch migration protein RuvA compare
IAI47_05420 -2.9 -1.9 PTS glucose transporter subunit IIA compare
IAI47_18830 -2.9 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13760 -2.9 -2.0 succinate dehydrogenase membrane anchor subunit compare
IAI47_14945 -2.9 -2.7 pyrroline-5-carboxylate reductase compare
IAI47_06415 -2.8 -1.9 NADH-quinone oxidoreductase subunit M compare
IAI47_18400 -2.8 -1.9 tyrosine recombinase XerC compare
IAI47_13750 -2.8 -1.9 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06380 -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_13700 -2.7 -5.0 Tol-Pal system protein TolQ compare
IAI47_06405 -2.7 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_16870 -2.7 -8.7 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_15980 -2.7 -12.3 catabolite repressor/activator compare
IAI47_03550 -2.7 -14.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_03820 -2.7 -4.0 site-specific tyrosine recombinase XerD compare
IAI47_05035 -2.7 -3.5 nucleoside-diphosphate kinase compare
IAI47_08355 -2.6 -5.1 flagellar protein FlhE compare
IAI47_17235 -2.6 -14.0 stringent starvation protein A compare
IAI47_10905 -2.6 -14.6 phosphoenolpyruvate synthase compare
IAI47_14685 -2.6 -9.5 cytochrome o ubiquinol oxidase subunit I compare
IAI47_01475 -2.6 -6.6 MurR/RpiR family transcriptional regulator compare
IAI47_14690 -2.5 -6.3 cytochrome o ubiquinol oxidase subunit III compare
IAI47_06395 -2.4 -1.6 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_17560 -2.4 -1.6 ROK family transcriptional regulator compare
IAI47_06370 -2.4 -5.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_00935 -2.4 -5.8 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_10925 -2.4 -3.5 EAL domain-containing protein compare
IAI47_14700 -2.4 -6.8 protoheme IX farnesyltransferase compare
IAI47_08195 -2.3 -18.0 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
IAI47_15635 -2.3 -2.9 RNA polymerase-binding protein DksA compare
IAI47_09550 -2.3 -5.4 hypothetical protein compare
IAI47_05510 -2.3 -12.5 putative DNA-binding transcriptional regulator compare
IAI47_05195 -2.2 -3.5 DnaA inactivator Hda compare
IAI47_10520 -2.2 -4.6 pyridoxamine 5'-phosphate oxidase compare
IAI47_18420 -2.2 -12.6 class I adenylate cyclase compare
IAI47_01005 -2.2 -13.4 DUF413 domain-containing protein compare
IAI47_06355 -2.2 -9.3 transcriptional regulator LrhA compare
IAI47_03805 -2.2 -5.2 FAD assembly factor SdhE compare
IAI47_13740 -2.2 -1.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_14695 -2.1 -4.5 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_06055 -2.1 -4.8 tRNA-Arg compare
IAI47_13155 -2.1 -4.2 H-NS histone family protein compare
IAI47_08965 -2.1 -12.0 asparaginase compare
IAI47_01765 -2.1 -9.7 DeoR/GlpR family transcriptional regulator compare
IAI47_06360 -2.1 -3.4 NADH-quinone oxidoreductase subunit A compare
IAI47_00930 -2.1 -10.8 DNA-binding transcriptional regulator OxyR compare
IAI47_04300 -2.0 -6.6 recombinase RecA compare
IAI47_14680 -2.0 -4.6 cytochrome o ubiquinol oxidase subunit II compare
IAI47_08700 -2.0 -8.0 RNA chaperone ProQ compare
IAI47_00375 -2.0 -16.5 ribose operon transcriptional repressor RbsR compare
IAI47_13260 -2.0 -10.3 formimidoylglutamate deiminase conserved
IAI47_06270 -1.9 -11.2 colicin V production protein compare
IAI47_19450 -1.9 -12.7 hypothetical protein compare
IAI47_05070 -1.9 -0.9 outer membrane protein assembly factor BamB compare
IAI47_08785 -1.8 -13.8 L-serine ammonia-lyase compare
IAI47_04950 -1.8 -8.5 nitrogen regulatory protein P-II compare
IAI47_03860 -1.8 -10.9 diaminopimelate decarboxylase compare
IAI47_16085 -1.8 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15810 -1.8 -1.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_17020 -1.8 -3.1 30S ribosome-binding factor RbfA compare
IAI47_11310 -1.8 -4.5 redox-regulated ATPase YchF compare
IAI47_04835 -1.8 -8.9 ATP-dependent RNA helicase SrmB compare
IAI47_13415 -1.8 -10.9 L,D-transpeptidase family protein compare
IAI47_14775 -1.7 -4.6 transcriptional regulator NrdR compare
IAI47_00300 -1.7 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16350 -1.7 -9.0 phosphoserine phosphatase compare
IAI47_14670 -1.7 -11.6 hypothetical protein compare
IAI47_05155 -1.7 -13.4 polyphosphate kinase 1 compare
IAI47_02400 -1.7 -2.2 YhdT family protein compare
IAI47_15110 -1.7 -4.9 chromophore lyase compare
IAI47_05330 -1.7 -12.8 L-asparagine permease compare
IAI47_17005 -1.6 -6.3 polyribonucleotide nucleotidyltransferase compare
IAI47_00460 -1.6 -1.1 glutamate--ammonia ligase compare
IAI47_21335 -1.6 -3.5 RepB family plasmid replication initiator protein compare
IAI47_00735 -1.6 -2.0 protein-export chaperone SecB compare
IAI47_06755 -1.6 -11.2 NAD-dependent malic enzyme compare
IAI47_06235 -1.6 -6.6 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_10795 -1.6 -7.2 HTH-type transcriptional repressor PurR compare
IAI47_17250 -1.6 -10.5 cell division protein ZapE compare
IAI47_13695 -1.5 -0.7 colicin uptake protein TolR compare
IAI47_13690 -1.5 -0.7 cell envelope integrity protein TolA compare
IAI47_01365 -1.5 -2.6 inorganic phosphate transporter PitA compare
IAI47_00810 -1.5 -7.6 ferredoxin--NADP(+) reductase compare
IAI47_16390 -1.5 -1.5 tRNA-Leu compare
IAI47_18405 -1.5 -5.3 DUF484 domain-containing protein compare
IAI47_01000 -1.5 -11.6 HTH-type transcriptional regulator HdfR compare
IAI47_04225 -1.5 -10.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
IAI47_03680 -1.5 -9.2 transketolase compare
IAI47_09750 -1.5 -7.8 ROK family transcriptional regulator compare
IAI47_16795 -1.5 -6.8 leucyl aminopeptidase compare
IAI47_13195 -1.4 -8.4 DNA starvation/stationary phase protection protein Dps compare
IAI47_02520 -1.4 -9.7 malate dehydrogenase compare
IAI47_06910 -1.4 -5.9 dCTP deaminase compare
IAI47_05175 -1.4 -8.4 phosphoribosylglycinamide formyltransferase compare
IAI47_01780 -1.4 -2.3 Fe-S biogenesis protein NfuA compare
IAI47_08205 -1.4 -9.3 sodium/proline symporter PutP conserved
IAI47_20895 -1.4 -8.4 LacI family DNA-binding transcriptional regulator compare
IAI47_05425 -1.4 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_18540 -1.4 -6.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_00430 -1.4 -10.1 DNA polymerase I compare
IAI47_13795 -1.4 -7.5 5-oxoprolinase subunit PxpA compare
IAI47_00515 -1.3 -2.0 DNA-directed RNA polymerase subunit omega compare
IAI47_15725 -1.3 -5.7 DeoR/GlpR transcriptional regulator compare
IAI47_18240 -1.3 -1.3 NAD(P)H-flavin reductase compare
IAI47_06965 -1.3 -2.0 glycosyltransferase family 2 protein compare
IAI47_12470 -1.3 -9.8 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_01915 -1.3 -5.0 phosphoglycolate phosphatase compare
IAI47_14470 -1.3 -2.2 YbaB/EbfC family nucleoid-associated protein compare
IAI47_03375 -1.3 -7.2 peptide chain release factor 3 compare
IAI47_13840 -1.3 -3.3 replication initiation negative regulator SeqA compare
IAI47_13255 -1.3 -6.1 imidazolonepropionase compare
IAI47_00335 -1.2 -6.7 two-component system sensor histidine kinase QseC compare
IAI47_11705 -1.2 -9.2 aldehyde dehydrogenase compare
IAI47_14075 -1.2 -1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_06245 -1.2 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00875 -1.2 -1.7 met regulon transcriptional regulator MetJ compare
IAI47_00465 -1.2 -4.3 ribosome-dependent GTPase TypA compare
IAI47_18510 -1.2 -7.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_04870 -1.2 -4.4 elongation factor 4 compare
IAI47_02090 -1.2 -2.9 elongation factor Tu compare
IAI47_04110 -1.1 -10.3 two-component sensor histidine kinase BarA compare
IAI47_19215 -1.1 -8.1 hypothetical protein compare
IAI47_05520 -1.1 -1.6 tRNA-Ala compare
IAI47_09040 -1.1 -0.7 NAD-dependent epimerase compare
IAI47_12655 -1.1 -8.1 Lon protease family protein compare
IAI47_18465 -1.1 -7.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_11085 -1.1 -7.3 succinylglutamate-semialdehyde dehydrogenase compare
IAI47_17205 -1.1 -1.3 PTS phosphocarrier protein NPr compare
IAI47_11075 -1.1 -7.6 succinylglutamate desuccinylase compare
IAI47_16080 -1.1 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_18505 -1.1 -5.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_12110 -1.1 -3.1 ribonuclease E compare
IAI47_04805 -1.1 -3.5 outer membrane protein assembly factor BamE compare
IAI47_04895 -1.1 -3.1 pyridoxine 5'-phosphate synthase compare
IAI47_09235 -1.1 -1.7 type I DNA topoisomerase compare
IAI47_13635 -1.1 -7.0 quinolinate synthase NadA compare
IAI47_18485 -1.1 -7.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_16520 -1.1 -6.5 hypothetical protein compare
IAI47_10335 -1.1 -7.3 class II fumarate hydratase conserved
IAI47_00770 -1.0 -0.8 general stress protein compare
IAI47_16205 -1.0 -5.4 threonine synthase compare
IAI47_12275 -1.0 -9.0 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_11080 -1.0 -7.0 N-succinylarginine dihydrolase compare
IAI47_12915 -1.0 -6.8 leucine-responsive transcriptional regulator Lrp compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source Ying_AminoAcid20 in Pantoea sp. MT58

For carbon source Ying_AminoAcid20 across organisms