Experiment set11S561 for Pantoea sp. MT58

Compare to:

Ying_AminoAcid20 rep B; time point 3

200 most detrimental genes:

  gene name fitness t score description  
IAI47_08285 +2.5 16.5 flagellar transcriptional regulator FlhC compare
IAI47_08280 +2.1 14.1 flagellar transcriptional regulator FlhD compare
IAI47_07005 +1.8 8.0 glycosyltransferase family 4 protein compare
IAI47_07970 +1.7 11.3 flagellar type III secretion system protein FliR compare
IAI47_08020 +1.6 12.2 flagellar assembly protein FliH compare
IAI47_11210 +1.6 12.5 type VI secretion system-associated protein TagF compare
IAI47_08030 +1.6 13.1 flagellar M-ring protein FliF compare
IAI47_08035 +1.6 2.9 flagellar hook-basal body complex protein FliE compare
IAI47_12140 +1.6 8.8 flagellar basal-body rod protein FlgG compare
IAI47_07995 +1.6 12.3 flagellar motor switch protein FliM compare
IAI47_12135 +1.6 12.8 flagellar basal body L-ring protein FlgH compare
IAI47_08295 +1.6 12.5 flagellar motor protein MotB compare
IAI47_07980 +1.6 10.2 flagellar type III secretion system pore protein FliP compare
IAI47_08015 +1.6 10.9 flagellum-specific ATP synthase FliI compare
IAI47_12145 +1.5 9.2 flagellar basal body rod protein FlgF compare
IAI47_11415 +1.5 2.1 hypothetical protein compare
IAI47_12130 +1.5 11.6 flagellar basal body P-ring protein FlgI compare
IAI47_12160 +1.5 9.8 flagellar basal body rod protein FlgC compare
IAI47_08000 +1.5 10.7 flagellar basal body-associated protein FliL compare
IAI47_08025 +1.5 9.9 flagellar motor switch protein FliG compare
IAI47_12155 +1.4 10.7 flagellar hook assembly protein FlgD compare
IAI47_07985 +1.4 9.1 flagellar biosynthetic protein FliO compare
IAI47_07990 +1.4 7.1 flagellar motor switch protein FliN compare
IAI47_18055 +1.4 7.7 DNA-binding protein HU-alpha compare
IAI47_08290 +1.4 10.4 flagellar motor stator protein MotA compare
IAI47_07015 +1.4 6.8 ABC transporter ATP-binding protein compare
IAI47_12125 +1.4 10.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_08345 +1.4 11.1 flagellar type III secretion system protein FlhB compare
IAI47_08010 +1.4 9.4 flagella biosynthesis chaperone FliJ compare
IAI47_07025 +1.4 6.3 glycosyltransferase family 4 protein compare
IAI47_12170 +1.3 9.6 flagellar basal body P-ring formation protein FlgA compare
IAI47_12150 +1.3 11.3 flagellar hook protein FlgE compare
IAI47_11215 +1.3 10.6 type VI secretion system-associated FHA domain protein TagH compare
IAI47_08005 +1.3 8.8 flagellar hook-length control protein FliK compare
IAI47_05525 +1.3 1.8 tRNA-Ala compare
IAI47_08350 +1.3 9.9 flagellar biosynthesis protein FlhA compare
IAI47_07975 +1.3 5.3 flagellar biosynthesis protein FliQ compare
IAI47_12165 +1.2 7.5 flagellar basal body rod protein FlgB compare
IAI47_00870 +1.2 1.3 50S ribosomal protein L31 compare
IAI47_07030 +1.2 7.6 HAD family hydrolase compare
IAI47_14640 +1.2 6.8 DNA-binding protein HU-beta compare
IAI47_07350 +1.1 1.1 hypothetical protein compare
IAI47_04485 +1.1 7.5 thioredoxin TrxC compare
IAI47_18580 +1.1 9.4 insulinase family protein compare
IAI47_08145 +1.1 9.7 flagellin FliC compare
IAI47_13725 +1.1 5.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_21610 +1.0 7.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_12925 +1.0 3.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_11610 +1.0 5.5 serine/threonine-protein phosphatase compare
IAI47_21830 +0.9 1.9 hypothetical protein compare
IAI47_08885 +0.9 8.1 SpoVR family protein compare
IAI47_13720 +0.9 3.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_08920 +0.9 7.5 YeaH/YhbH family protein compare
IAI47_08925 +0.9 7.5 protein kinase YeaG compare
IAI47_06675 +0.9 2.4 DUF1232 domain-containing protein compare
IAI47_12180 +0.8 4.4 flagellar export chaperone FlgN compare
IAI47_21655 +0.8 1.1 LacI family DNA-binding transcriptional regulator compare
IAI47_05580 +0.8 1.6 membrane protein YpdK compare
IAI47_11220 +0.8 4.1 serine/threonine-protein phosphatase compare
IAI47_12375 +0.8 1.5 acyl carrier protein compare
IAI47_00445 +0.8 6.1 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_02705 +0.7 5.7 DUF1107 domain-containing protein compare
IAI47_11375 +0.7 1.5 hypothetical protein compare
IAI47_10320 +0.7 1.2 Rrf2 family transcriptional regulator compare
IAI47_18215 +0.7 1.3 Trk system potassium transporter TrkH compare
IAI47_07000 +0.7 5.4 UDP-glucose 4-epimerase GalE compare
IAI47_12195 +0.7 3.5 DUF480 domain-containing protein compare
IAI47_13050 +0.7 3.0 YbjN domain-containing protein compare
IAI47_21180 +0.7 2.5 IS6 family transposase compare
IAI47_05705 +0.7 3.5 DNA polymerase III subunit theta compare
IAI47_10825 +0.7 1.3 tRNA-Val compare
IAI47_10050 +0.7 2.1 hypothetical protein compare
IAI47_10275 +0.7 5.3 hypothetical protein compare
IAI47_01135 +0.7 0.6 hypothetical protein compare
IAI47_07010 +0.7 1.7 ABC transporter permease compare
IAI47_15995 +0.6 0.7 leu operon leader peptide compare
IAI47_14985 +0.6 2.2 hypothetical protein compare
IAI47_06595 +0.6 2.7 hypothetical protein compare
IAI47_06625 +0.6 4.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_14635 +0.6 5.3 peptidylprolyl isomerase compare
IAI47_00830 +0.6 4.9 aquaporin family protein compare
IAI47_00825 +0.6 5.3 glycerol kinase GlpK compare
IAI47_01875 +0.6 1.4 hypothetical protein compare
IAI47_10280 +0.6 4.9 virulence factor SrfB compare
IAI47_06265 +0.6 4.4 cell division protein DedD compare
IAI47_17255 +0.6 1.6 DUF1043 family protein compare
IAI47_08135 +0.6 4.4 flagellar export chaperone FliS compare
IAI47_12120 +0.6 4.8 flagellar hook-associated protein FlgK compare
IAI47_19690 +0.6 1.1 hypothetical protein compare
IAI47_19045 +0.6 1.7 two-component-system connector protein YcgZ compare
IAI47_21605 +0.6 4.9 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_08840 +0.6 3.5 ribonuclease D compare
IAI47_00540 +0.6 1.6 hypothetical protein compare
IAI47_08160 +0.6 3.2 RNA polymerase sigma factor FliA compare
IAI47_14170 +0.6 2.2 hypothetical protein compare
IAI47_05325 +0.6 1.8 DUF1471 domain-containing protein compare
IAI47_15595 +0.6 1.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_08590 +0.6 2.3 hypothetical protein compare
IAI47_08670 +0.6 2.2 DUF1272 domain-containing protein compare
IAI47_07550 +0.6 0.9 tRNA-Asn compare
IAI47_06500 +0.6 4.0 TolC family outer membrane protein compare
IAI47_09245 +0.5 2.3 YmiA family putative membrane protein compare
IAI47_21015 +0.5 2.1 helix-turn-helix transcriptional regulator compare
IAI47_02600 +0.5 4.3 FtsH protease activity modulator HflK compare
IAI47_19945 +0.5 0.7 hypothetical protein compare
IAI47_06445 +0.5 2.1 2Fe-2S ferredoxin-like protein compare
IAI47_11685 +0.5 3.7 DotU family type VI secretion system protein compare
IAI47_14625 +0.5 3.3 YbgC/FadM family acyl-CoA thioesterase compare
IAI47_07885 +0.5 0.8 tRNA-Asn compare
IAI47_03570 +0.5 2.1 YggL family protein compare
IAI47_01340 +0.5 3.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ compare
IAI47_01750 +0.5 2.4 glycerol-3-phosphate dehydrogenase compare
IAI47_10430 +0.5 1.0 hypothetical protein compare
IAI47_12930 +0.5 1.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05745 +0.5 0.9 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_02605 +0.5 3.8 protease modulator HflC compare
IAI47_16600 +0.5 1.1 tRNA-OTHER compare
IAI47_02095 +0.5 2.3 bacterioferritin-associated ferredoxin compare
IAI47_18265 +0.5 1.2 Sec-independent protein translocase subunit TatB compare
IAI47_01560 +0.5 2.5 aspartate 1-decarboxylase autocleavage activator PanM compare
IAI47_12605 +0.5 3.7 CoA-binding protein compare
IAI47_18550 +0.5 1.8 peptidylprolyl isomerase compare
IAI47_13075 +0.5 3.3 hypothetical protein compare
IAI47_04705 +0.5 0.8 hypothetical protein compare
IAI47_18715 +0.5 1.1 YibL family ribosome-associated protein compare
IAI47_07890 +0.5 2.0 DgsA anti-repressor MtfA compare
IAI47_08800 +0.5 0.9 YoaH family protein compare
IAI47_03950 +0.5 2.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_10285 +0.5 3.4 SrfC compare
IAI47_08815 +0.5 1.7 hypothetical protein compare
IAI47_06490 +0.5 4.7 Ig-like domain-containing protein compare
IAI47_09435 +0.5 3.5 GtrA family protein compare
IAI47_17085 +0.5 4.4 serine-type D-Ala-D-Ala carboxypeptidase compare
IAI47_13405 +0.5 3.2 DedA family protein compare
IAI47_08140 +0.5 4.1 flagellar filament capping protein FliD compare
IAI47_14940 +0.5 1.3 YaiI/YqxD family protein compare
IAI47_14145 +0.5 2.4 hypothetical protein compare
IAI47_07250 +0.5 1.3 tRNA-Asn compare
IAI47_10785 +0.5 3.2 C40 family peptidase compare
IAI47_07790 +0.5 1.2 ribose 1,5-bisphosphokinase compare
IAI47_16375 +0.5 3.7 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_07930 +0.5 0.7 DUF2158 domain-containing protein compare
IAI47_03130 +0.5 3.3 DUF1190 family protein compare
IAI47_16095 +0.5 1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_00855 +0.4 2.3 cell division protein FtsN compare
IAI47_06505 +0.4 3.8 type I secretion system permease/ATPase compare
IAI47_14910 +0.4 2.7 recombination-associated protein RdgC compare
IAI47_16055 +0.4 3.6 RNA polymerase-associated protein RapA compare
IAI47_09850 +0.4 3.5 beta-lactamase compare
IAI47_10600 +0.4 2.0 hypothetical protein compare
IAI47_10455 +0.4 1.7 electron transport complex subunit RsxC compare
IAI47_12115 +0.4 3.3 flagellar hook-associated protein FlgL compare
IAI47_11695 +0.4 2.6 type VI secretion system lipoprotein TssJ compare
IAI47_07185 +0.4 2.6 substrate-binding domain-containing protein compare
IAI47_09580 +0.4 1.4 FNR family transcription factor compare
IAI47_04165 +0.4 2.2 hypothetical protein compare
IAI47_18250 +0.4 2.4 transcription/translation regulatory transformer protein RfaH compare
IAI47_07300 +0.4 1.9 hypothetical protein compare
IAI47_08325 +0.4 2.5 protein-glutamate O-methyltransferase CheR compare
IAI47_06510 +0.4 3.0 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_08465 +0.4 2.6 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_02320 +0.4 1.8 DUF1488 domain-containing protein compare
IAI47_06545 +0.4 1.9 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_12765 +0.4 3.1 aspartate/tyrosine/aromatic aminotransferase compare
IAI47_10725 +0.4 0.9 DUF1656 domain-containing protein compare
IAI47_15240 +0.4 2.0 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
IAI47_00320 +0.4 3.2 ATPase RavA stimulator ViaA compare
IAI47_07490 +0.4 1.1 DNA-binding protein compare
IAI47_11675 +0.4 2.5 type VI secretion system-associated protein TagF compare
IAI47_00940 +0.4 2.7 HTH-type transcriptional repressor FabR compare
IAI47_16685 +0.4 1.9 DUF2501 domain-containing protein compare
IAI47_07475 +0.4 0.7 hypothetical protein compare
IAI47_08335 +0.4 2.3 chemotaxis response regulator CheY compare
IAI47_00170 +0.4 2.9 ROK family protein compare
IAI47_19245 +0.4 1.4 SIS domain-containing protein compare
IAI47_17050 +0.4 1.8 preprotein translocase subunit SecG compare
IAI47_10550 +0.4 1.3 two-component-system connector protein YcgZ compare
IAI47_19390 +0.4 2.3 xanthine dehydrogenase family protein subunit M compare
IAI47_08765 +0.4 2.0 PTS mannose/fructose/sorbose transporter subunit IIC compare
IAI47_04120 +0.4 3.2 GTP diphosphokinase compare
IAI47_20960 +0.4 2.0 LysR family transcriptional regulator compare
IAI47_04575 +0.4 3.0 spermidine N1-acetyltransferase compare
IAI47_05365 +0.4 2.0 N-acetylmuramoyl-L-alanine amidase AmiA compare
IAI47_06965 +0.4 0.7 glycosyltransferase family 2 protein compare
IAI47_07700 +0.4 1.4 EAL domain-containing protein compare
IAI47_04830 +0.4 1.6 autonomous glycyl radical cofactor GrcA compare
IAI47_21780 +0.4 1.3 hypothetical protein compare
IAI47_00510 +0.4 1.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_08740 +0.3 1.9 DUF2627 domain-containing protein compare
IAI47_14185 +0.3 2.0 DUF1349 domain-containing protein compare
IAI47_21115 +0.3 1.3 arsenate reductase (glutaredoxin) compare
IAI47_15345 +0.3 3.1 murein transglycosylase D compare
IAI47_09950 +0.3 2.0 hypothetical protein compare
IAI47_06710 +0.3 1.7 LysR family transcriptional regulator compare
IAI47_17550 +0.3 1.7 GNAT family N-acetyltransferase compare
IAI47_01515 +0.3 2.6 zinc/cadmium/mercury/lead-transporting ATPase compare
IAI47_05760 +0.3 1.8 hypothetical protein compare
IAI47_11110 +0.3 1.9 MarR family transcriptional regulator compare
IAI47_02365 +0.3 2.8 amino acid ABC transporter permease compare
IAI47_15235 +0.3 1.1 hydroxyisourate hydrolase compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Ying_AminoAcid20 in Pantoea sp. MT58

For carbon source Ying_AminoAcid20 across organisms