Experiment set11S558 for Pantoea sp. MT58

Compare to:

Ying_sugar7 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
IAI47_16210 -5.2 -3.6 homoserine kinase compare
IAI47_07090 -5.1 -3.5 histidinol dehydrogenase compare
IAI47_16010 -5.0 -3.4 3-isopropylmalate dehydratase large subunit compare
IAI47_06275 -5.0 -3.4 amidophosphoribosyltransferase compare
IAI47_09175 -5.0 -3.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_09180 -4.9 -4.8 anthranilate phosphoribosyltransferase compare
IAI47_01040 -4.9 -3.4 threonine ammonia-lyase, biosynthetic compare
IAI47_09190 -4.9 -3.4 anthranilate synthase component 1 compare
IAI47_16115 -4.9 -3.4 carbamoyl-phosphate synthase large subunit compare
IAI47_18530 -4.8 -3.3 thioredoxin TrxA compare
IAI47_05275 -4.8 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_07085 -4.8 -3.3 histidinol-phosphate transaminase compare
IAI47_03725 -4.8 -4.7 phosphoglycerate dehydrogenase compare
IAI47_00915 -4.8 -4.7 argininosuccinate synthase compare
IAI47_07060 -4.8 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_07070 -4.8 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_17225 -4.8 -3.3 sulfite reductase subunit alpha compare
IAI47_16120 -4.7 -4.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00905 -4.7 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_00450 -4.7 -5.6 nitrogen regulation protein NR(I) compare
IAI47_09165 -4.7 -3.3 tryptophan synthase subunit alpha compare
IAI47_11830 -4.7 -4.6 muramoyltetrapeptide carboxypeptidase compare
IAI47_17220 -4.7 -4.6 glutamate synthase large subunit compare
IAI47_09170 -4.7 -6.4 tryptophan synthase subunit beta compare
IAI47_13180 -4.7 -4.5 manganese-binding transcriptional regulator MntR compare
IAI47_01030 -4.7 -3.2 branched-chain amino acid transaminase compare
IAI47_00920 -4.7 -3.2 argininosuccinate lyase compare
IAI47_04930 -4.6 -4.5 phosphoribosylformylglycinamidine synthase compare
IAI47_00600 -4.6 -3.2 orotate phosphoribosyltransferase compare
IAI47_16000 -4.6 -7.1 2-isopropylmalate synthase compare
IAI47_01035 -4.6 -3.2 dihydroxy-acid dehydratase compare
IAI47_00895 -4.6 -3.2 phosphoenolpyruvate carboxylase compare
IAI47_16215 -4.6 -4.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_09185 -4.6 -3.2 glutamine amidotransferase compare
IAI47_04190 -4.6 -3.2 adenylyl-sulfate kinase compare
IAI47_03975 -4.6 -3.2 amino-acid N-acetyltransferase compare
IAI47_00900 -4.6 -5.4 acetylornithine deacetylase compare
IAI47_16860 -4.6 -3.2 aspartate carbamoyltransferase compare
IAI47_09275 -4.5 -3.1 orotidine-5'-phosphate decarboxylase compare
IAI47_12215 -4.5 -3.1 dihydroorotase compare
IAI47_04155 -4.5 -6.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00910 -4.5 -3.1 acetylglutamate kinase compare
IAI47_04180 -4.5 -8.1 sulfate adenylyltransferase subunit CysD compare
IAI47_12705 -4.5 -4.4 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_05180 -4.5 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_16205 -4.5 -3.1 threonine synthase compare
IAI47_18015 -4.5 -3.1 homoserine O-succinyltransferase compare
IAI47_18045 -4.5 -3.1 phosphoribosylamine--glycine ligase compare
IAI47_07065 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_00880 -4.5 -3.1 cystathionine gamma-synthase compare
IAI47_16830 -4.5 -3.1 ornithine carbamoyltransferase compare
IAI47_13880 -4.5 -3.1 glucosamine-6-phosphate deaminase compare
IAI47_03860 -4.5 -3.1 diaminopimelate decarboxylase compare
IAI47_16005 -4.5 -8.0 3-isopropylmalate dehydrogenase compare
IAI47_04185 -4.4 -10.3 sulfate adenylyltransferase subunit CysN compare
IAI47_13900 -4.4 -3.1 asparagine synthase B compare
IAI47_12915 -4.4 -3.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_18040 -4.4 -6.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_16015 -4.4 -3.0 3-isopropylmalate dehydratase small subunit compare
IAI47_09010 -4.4 -6.7 formyltetrahydrofolate deformylase compare
IAI47_16350 -4.4 -3.0 phosphoserine phosphatase compare
IAI47_07080 -4.4 -3.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_04150 -4.4 -6.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_07075 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_08085 -4.3 -3.0 helix-turn-helix domain-containing protein compare
IAI47_14355 -4.3 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_01050 -4.3 -3.0 ketol-acid reductoisomerase compare
IAI47_16870 -4.3 -5.8 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_12865 -4.2 -2.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_02695 -4.2 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_14350 -4.2 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_04160 -4.2 -2.9 phosphoadenylyl-sulfate reductase compare
IAI47_11930 -4.2 -2.9 two-component system response regulator PhoP compare
IAI47_04895 -4.1 -2.8 pyridoxine 5'-phosphate synthase compare
IAI47_13770 -4.1 -2.8 citrate synthase compare
IAI47_00455 -4.1 -4.0 nitrogen regulation protein NR(II) compare
IAI47_04175 -4.0 -7.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_07095 -4.0 -11.5 ATP phosphoribosyltransferase compare
IAI47_13685 -3.9 -2.7 Tol-Pal system protein TolB compare
IAI47_10520 -3.9 -2.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_11935 -3.9 -12.2 two-component system sensor histidine kinase PhoQ compare
IAI47_03855 -3.9 -9.2 LysR family transcriptional regulator compare
IAI47_18705 -3.9 -12.3 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_04410 -3.8 -16.7 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_06235 -3.8 -4.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_06965 -3.7 -2.5 glycosyltransferase family 2 protein compare
IAI47_15115 -3.7 -2.5 glutamate-5-semialdehyde dehydrogenase compare
IAI47_18315 -3.7 -8.6 HTH-type transcriptional regulator MetR compare
IAI47_16080 -3.6 -8.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_15635 -3.6 -2.4 RNA polymerase-binding protein DksA compare
IAI47_08705 -3.6 -9.7 carboxy terminal-processing peptidase compare
IAI47_05390 -3.5 -6.7 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_17185 -3.4 -2.4 RNA polymerase factor sigma-54 compare
IAI47_17020 -3.4 -2.3 30S ribosome-binding factor RbfA compare
IAI47_15120 -3.3 -2.2 glutamate 5-kinase compare
IAI47_05395 -3.2 -14.1 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_13745 -3.2 -2.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_01120 -3.2 -12.1 manganese efflux pump MntP compare
IAI47_08700 -3.2 -8.9 RNA chaperone ProQ compare
IAI47_07165 -3.1 -2.1 exodeoxyribonuclease I compare
IAI47_04605 -3.1 -15.7 magnesium-translocating P-type ATPase compare
IAI47_17035 -3.1 -3.0 ribosome maturation factor RimP compare
IAI47_12645 -3.1 -2.1 porin OmpA compare
IAI47_05385 -3.0 -17.4 sulfate ABC transporter substrate-binding protein compare
IAI47_09235 -2.9 -2.7 type I DNA topoisomerase compare
IAI47_05400 -2.9 -10.0 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_14945 -2.9 -2.0 pyrroline-5-carboxylate reductase compare
IAI47_06355 -2.9 -7.2 transcriptional regulator LrhA compare
IAI47_06475 -2.9 -5.9 transcriptional regulator RcsB compare
IAI47_18830 -2.8 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00300 -2.8 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00780 -2.7 -1.9 6-phosphofructokinase compare
IAI47_00755 -2.7 -12.7 envelope stress sensor histidine kinase CpxA compare
IAI47_08165 -2.7 -10.8 flagella biosynthesis regulatory protein FliZ compare
IAI47_10845 -2.7 -4.0 major outer membrane lipoprotein compare
IAI47_05155 -2.7 -18.8 polyphosphate kinase 1 compare
IAI47_08355 -2.6 -4.8 flagellar protein FlhE compare
IAI47_06055 -2.6 -4.8 tRNA-Arg compare
IAI47_18400 -2.6 -2.4 tyrosine recombinase XerC compare
IAI47_00785 -2.6 -16.5 sulfate ABC transporter substrate-binding protein compare
IAI47_01005 -2.6 -13.7 DUF413 domain-containing protein compare
IAI47_07895 -2.5 -12.7 hypothetical protein compare
IAI47_05510 -2.5 -12.3 putative DNA-binding transcriptional regulator compare
IAI47_05175 -2.5 -11.7 phosphoribosylglycinamide formyltransferase compare
IAI47_12480 -2.4 -13.4 autoinducer synthase compare
IAI47_16420 -2.4 -14.2 LacI family DNA-binding transcriptional regulator compare
IAI47_07965 -2.3 -8.4 transcriptional regulator RcsA compare
IAI47_12060 -2.3 -5.8 beta-ketoacyl-ACP synthase II compare
IAI47_01365 -2.2 -2.9 inorganic phosphate transporter PitA compare
IAI47_03730 -2.2 -10.8 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_15540 -2.1 -12.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05440 -2.1 -10.8 cysteine synthase A compare
IAI47_13740 -2.1 -1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_05425 -2.1 -4.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_08450 -2.1 -4.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00875 -2.0 -2.2 met regulon transcriptional regulator MetJ compare
IAI47_18675 -2.0 -7.6 MarR family transcriptional regulator compare
IAI47_01045 -2.0 -7.0 HTH-type transcriptional activator IlvY compare
IAI47_02465 -2.0 -14.6 metalloprotease TldD compare
IAI47_05195 -1.9 -3.4 DnaA inactivator Hda compare
IAI47_05070 -1.9 -0.7 outer membrane protein assembly factor BamB compare
IAI47_17000 -1.9 -11.2 lipoprotein NlpI compare
IAI47_05035 -1.9 -3.5 nucleoside-diphosphate kinase compare
IAI47_12470 -1.9 -13.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_17235 -1.9 -11.5 stringent starvation protein A compare
IAI47_12280 -1.9 -12.1 glucan biosynthesis protein G compare
IAI47_18410 -1.8 -5.8 diaminopimelate epimerase compare
IAI47_14075 -1.8 -2.8 transcription antiterminator/RNA stability regulator CspE compare
IAI47_02765 -1.8 -11.5 metalloprotease PmbA compare
IAI47_16085 -1.8 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_03820 -1.8 -4.2 site-specific tyrosine recombinase XerD compare
IAI47_05090 -1.7 -3.2 hypothetical protein compare
IAI47_12275 -1.7 -13.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_08445 -1.7 -1.8 Holliday junction branch migration protein RuvA compare
IAI47_15810 -1.7 -1.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_04110 -1.7 -14.7 two-component sensor histidine kinase BarA compare
IAI47_09240 -1.7 -1.2 HTH-type transcriptional regulator CysB compare
IAI47_06940 -1.7 -0.9 tyrosine-protein kinase Wzc compare
IAI47_04400 -1.7 -7.6 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17005 -1.7 -6.4 polyribonucleotide nucleotidyltransferase compare
IAI47_12945 -1.7 -11.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_01000 -1.7 -12.6 HTH-type transcriptional regulator HdfR compare
IAI47_09300 -1.7 -7.1 crotonase/enoyl-CoA hydratase family protein compare
IAI47_13545 -1.7 -9.1 6-phosphogluconolactonase compare
IAI47_14700 -1.7 -6.6 protoheme IX farnesyltransferase compare
IAI47_12920 -1.7 -4.5 thioredoxin-disulfide reductase compare
IAI47_13760 -1.6 -3.1 succinate dehydrogenase membrane anchor subunit compare
IAI47_12935 -1.6 -6.5 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_08410 -1.6 -5.4 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_11735 -1.6 -3.2 histidinol-phosphatase compare
IAI47_00460 -1.6 -1.0 glutamate--ammonia ligase compare
IAI47_16955 -1.5 -6.5 N-acetyltransferase compare
IAI47_13690 -1.5 -0.5 cell envelope integrity protein TolA compare
IAI47_13695 -1.5 -0.5 colicin uptake protein TolR compare
IAI47_03555 -1.5 -6.0 oxidative damage protection protein compare
IAI47_08440 -1.5 -2.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_04835 -1.5 -7.5 ATP-dependent RNA helicase SrmB compare
IAI47_13765 -1.5 -2.5 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_06270 -1.5 -7.8 colicin V production protein compare
IAI47_14545 -1.4 -5.0 hypothetical protein compare
IAI47_14685 -1.4 -8.4 cytochrome o ubiquinol oxidase subunit I compare
IAI47_17205 -1.4 -1.3 PTS phosphocarrier protein NPr compare
IAI47_17215 -1.4 -1.3 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_01780 -1.4 -2.2 Fe-S biogenesis protein NfuA compare
IAI47_08405 -1.4 -7.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_03550 -1.4 -9.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_05465 -1.4 -5.4 bile acid:sodium symporter compare
IAI47_16400 -1.4 -11.0 GGDEF domain-containing protein compare
IAI47_07000 -1.4 -8.2 UDP-glucose 4-epimerase GalE compare
IAI47_06135 -1.4 -4.0 phosphohistidine phosphatase SixA compare
IAI47_07020 -1.3 -1.8 hypothetical protein compare
IAI47_13155 -1.3 -2.6 H-NS histone family protein compare
IAI47_01955 -1.3 -8.0 aspartate aminotransferase family protein compare
IAI47_17785 -1.3 -9.4 oligosaccharide flippase family protein compare
IAI47_13700 -1.3 -3.1 Tol-Pal system protein TolQ compare
IAI47_17780 -1.3 -10.5 hypothetical protein compare
IAI47_18535 -1.2 -8.9 ATP-dependent RNA helicase RhlB compare
IAI47_14680 -1.2 -4.7 cytochrome o ubiquinol oxidase subunit II compare
IAI47_17620 -1.2 -4.1 VOC family metalloprotein YjdN compare
IAI47_02590 -1.2 -4.9 RNA chaperone Hfq compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Ying_sugar7 in Pantoea sp. MT58

For carbon source Ying_sugar7 across organisms