Experiment set11S554 for Pantoea sp. MT58

Compare to:

Ying_all64 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
IAI47_16420 -5.5 -6.5 LacI family DNA-binding transcriptional regulator compare
IAI47_16210 -4.9 -5.8 homoserine kinase compare
IAI47_16205 -4.3 -4.2 threonine synthase compare
IAI47_13880 -4.3 -6.5 glucosamine-6-phosphate deaminase compare
IAI47_08085 -4.2 -2.9 helix-turn-helix domain-containing protein compare
IAI47_12865 -4.1 -4.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_11930 -4.0 -2.8 two-component system response regulator PhoP compare
IAI47_01120 -4.0 -8.4 manganese efflux pump MntP compare
IAI47_08705 -3.9 -4.6 carboxy terminal-processing peptidase compare
IAI47_08165 -3.9 -4.6 flagella biosynthesis regulatory protein FliZ compare
IAI47_03725 -3.9 -9.9 phosphoglycerate dehydrogenase compare
IAI47_13685 -3.9 -2.6 Tol-Pal system protein TolB compare
IAI47_11830 -3.8 -8.3 muramoyltetrapeptide carboxypeptidase compare
IAI47_13180 -3.8 -8.3 manganese-binding transcriptional regulator MntR compare
IAI47_16215 -3.6 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_00375 -3.6 -22.4 ribose operon transcriptional repressor RbsR compare
IAI47_11935 -3.6 -13.2 two-component system sensor histidine kinase PhoQ compare
IAI47_13900 -3.5 -15.0 asparagine synthase B compare
IAI47_13770 -3.4 -10.1 citrate synthase compare
IAI47_05035 -3.3 -2.3 nucleoside-diphosphate kinase compare
IAI47_04605 -3.3 -15.3 magnesium-translocating P-type ATPase compare
IAI47_05510 -3.3 -12.4 putative DNA-binding transcriptional regulator compare
IAI47_05090 -3.3 -5.3 hypothetical protein compare
IAI47_00655 -3.1 -4.1 glycosyltransferase family 4 protein compare
IAI47_18705 -3.0 -12.8 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_12645 -3.0 -2.0 porin OmpA compare
IAI47_03820 -2.9 -3.4 site-specific tyrosine recombinase XerD compare
IAI47_16350 -2.9 -10.2 phosphoserine phosphatase compare
IAI47_12060 -2.9 -5.0 beta-ketoacyl-ACP synthase II compare
IAI47_06420 -2.9 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_17000 -2.8 -11.8 lipoprotein NlpI compare
IAI47_16085 -2.8 -3.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_04835 -2.8 -9.2 ATP-dependent RNA helicase SrmB compare
IAI47_13745 -2.7 -4.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_08355 -2.7 -5.3 flagellar protein FlhE compare
IAI47_08440 -2.7 -3.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_06365 -2.6 -4.6 NADH-quinone oxidoreductase subunit B compare
IAI47_17020 -2.6 -3.4 30S ribosome-binding factor RbfA compare
IAI47_06390 -2.6 -3.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_00875 -2.6 -2.4 met regulon transcriptional regulator MetJ compare
IAI47_06380 -2.6 -1.7 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_00780 -2.6 -2.5 6-phosphofructokinase compare
IAI47_08700 -2.6 -8.6 RNA chaperone ProQ compare
IAI47_10520 -2.5 -4.6 pyridoxamine 5'-phosphate oxidase compare
IAI47_04235 -2.5 -15.1 RNA polymerase sigma factor RpoS compare
IAI47_06410 -2.5 -5.3 NADH-quinone oxidoreductase subunit L compare
IAI47_16990 -2.5 -5.8 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_16870 -2.4 -8.3 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_07165 -2.4 -2.7 exodeoxyribonuclease I compare
IAI47_18400 -2.4 -2.3 tyrosine recombinase XerC compare
IAI47_13755 -2.4 -6.6 succinate dehydrogenase flavoprotein subunit compare
IAI47_06385 -2.4 -3.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_06415 -2.4 -3.6 NADH-quinone oxidoreductase subunit M compare
IAI47_06405 -2.3 -2.7 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_06370 -2.3 -4.3 NADH-quinone oxidoreductase subunit C/D compare
IAI47_06355 -2.3 -8.1 transcriptional regulator LrhA compare
IAI47_13760 -2.3 -3.0 succinate dehydrogenase membrane anchor subunit compare
IAI47_01005 -2.3 -13.1 DUF413 domain-containing protein compare
IAI47_17235 -2.3 -12.7 stringent starvation protein A compare
IAI47_00735 -2.3 -1.5 protein-export chaperone SecB compare
IAI47_01030 -2.2 -13.8 branched-chain amino acid transaminase compare
IAI47_03375 -2.2 -8.7 peptide chain release factor 3 compare
IAI47_06360 -2.2 -3.1 NADH-quinone oxidoreductase subunit A compare
IAI47_13700 -2.2 -4.6 Tol-Pal system protein TolQ compare
IAI47_08450 -2.2 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16390 -2.2 -1.4 tRNA-Leu compare
IAI47_16995 -2.2 -3.1 protein YrbN compare
IAI47_17900 -2.1 -2.1 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_13750 -2.1 -3.5 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06055 -2.1 -4.5 tRNA-Arg compare
IAI47_17005 -2.0 -6.3 polyribonucleotide nucleotidyltransferase compare
IAI47_19945 -2.0 -1.3 hypothetical protein compare
IAI47_13740 -2.0 -1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_01365 -1.9 -2.5 inorganic phosphate transporter PitA compare
IAI47_13765 -1.9 -3.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_15115 -1.9 -8.8 glutamate-5-semialdehyde dehydrogenase compare
IAI47_14685 -1.9 -9.9 cytochrome o ubiquinol oxidase subunit I compare
IAI47_04895 -1.9 -4.3 pyridoxine 5'-phosphate synthase compare
IAI47_03860 -1.9 -11.0 diaminopimelate decarboxylase compare
IAI47_05070 -1.9 -0.7 outer membrane protein assembly factor BamB compare
IAI47_12470 -1.9 -13.5 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_06400 -1.9 -3.2 NADH-quinone oxidoreductase subunit J compare
IAI47_06395 -1.9 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_10845 -1.9 -3.9 major outer membrane lipoprotein compare
IAI47_14945 -1.9 -2.7 pyrroline-5-carboxylate reductase compare
IAI47_13795 -1.8 -8.8 5-oxoprolinase subunit PxpA compare
IAI47_07965 -1.8 -7.4 transcriptional regulator RcsA compare
IAI47_18830 -1.8 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_01000 -1.8 -13.2 HTH-type transcriptional regulator HdfR compare
IAI47_04110 -1.8 -15.7 two-component sensor histidine kinase BarA compare
IAI47_02515 -1.8 -6.0 transcriptional regulator ArgR compare
IAI47_03550 -1.8 -11.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_12915 -1.7 -9.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_17035 -1.7 -3.2 ribosome maturation factor RimP compare
IAI47_15120 -1.7 -5.8 glutamate 5-kinase compare
IAI47_14700 -1.7 -6.5 protoheme IX farnesyltransferase compare
IAI47_08410 -1.7 -5.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_12495 -1.7 -10.3 D-serine/D-alanine/glycine transporter conserved
IAI47_15110 -1.7 -5.0 chromophore lyase compare
IAI47_12945 -1.6 -11.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_14680 -1.6 -5.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_18470 -1.6 -11.2 ECA oligosaccharide polymerase compare
IAI47_15810 -1.6 -1.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_00935 -1.6 -4.8 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_19295 -1.6 -3.5 hypothetical protein compare
IAI47_12275 -1.6 -13.0 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_11950 -1.5 -7.9 NAD-dependent protein deacylase compare
IAI47_01035 -1.5 -11.2 dihydroxy-acid dehydratase compare
IAI47_12280 -1.5 -10.4 glucan biosynthesis protein G compare
IAI47_06475 -1.5 -5.3 transcriptional regulator RcsB compare
IAI47_03905 -1.5 -9.4 TerC family protein compare
IAI47_14075 -1.5 -2.6 transcription antiterminator/RNA stability regulator CspE compare
IAI47_02400 -1.5 -1.9 YhdT family protein compare
IAI47_01050 -1.5 -11.2 ketol-acid reductoisomerase compare
IAI47_13690 -1.5 -0.5 cell envelope integrity protein TolA compare
IAI47_13695 -1.5 -0.5 colicin uptake protein TolR compare
IAI47_15635 -1.5 -2.0 RNA polymerase-binding protein DksA compare
IAI47_13885 -1.5 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_00460 -1.5 -1.0 glutamate--ammonia ligase compare
IAI47_13545 -1.5 -9.0 6-phosphogluconolactonase compare
IAI47_11515 -1.5 -2.4 hypothetical protein compare
IAI47_00465 -1.5 -4.3 ribosome-dependent GTPase TypA compare
IAI47_12085 -1.5 -5.5 phosphate acyltransferase PlsX compare
IAI47_14690 -1.4 -5.8 cytochrome o ubiquinol oxidase subunit III compare
IAI47_17120 -1.4 -2.7 BolA family iron metabolism protein IbaG compare
IAI47_02590 -1.4 -5.2 RNA chaperone Hfq compare
IAI47_18240 -1.4 -2.0 NAD(P)H-flavin reductase compare
IAI47_04705 -1.4 -1.2 hypothetical protein compare
IAI47_05195 -1.4 -2.8 DnaA inactivator Hda compare
IAI47_12480 -1.4 -9.3 autoinducer synthase compare
IAI47_03680 -1.4 -8.5 transketolase compare
IAI47_13415 -1.4 -8.8 L,D-transpeptidase family protein compare
IAI47_01780 -1.3 -2.3 Fe-S biogenesis protein NfuA compare
IAI47_00370 -1.3 -7.4 ribokinase compare
IAI47_09265 -1.3 -3.4 LapA family protein compare
IAI47_13950 -1.3 -1.6 PhoH family protein compare
IAI47_07895 -1.3 -8.4 hypothetical protein compare
IAI47_06235 -1.3 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_04870 -1.3 -4.6 elongation factor 4 compare
IAI47_12175 -1.3 -2.8 anti-sigma-28 factor FlgM compare
IAI47_05425 -1.3 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_10925 -1.3 -2.9 EAL domain-containing protein compare
IAI47_14965 -1.3 -2.7 hypothetical protein compare
IAI47_21880 -1.2 -0.6 ParA family protein compare
IAI47_08405 -1.2 -6.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_03150 -1.2 -7.7 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_17255 -1.2 -2.7 DUF1043 family protein compare
IAI47_09235 -1.2 -1.6 type I DNA topoisomerase compare
IAI47_05830 -1.2 -3.3 hypothetical protein compare
IAI47_16080 -1.2 -6.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_14695 -1.2 -3.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_13840 -1.2 -2.8 replication initiation negative regulator SeqA compare
IAI47_08445 -1.1 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_12655 -1.1 -7.9 Lon protease family protein compare
IAI47_10775 -1.1 -4.7 ribonuclease T compare
IAI47_18060 -1.1 -6.2 YjaG family protein compare
IAI47_00915 -1.1 -8.5 argininosuccinate synthase compare
IAI47_09305 -1.1 -1.9 cyclic di-GMP phosphodiesterase compare
IAI47_03615 -1.1 -6.1 glutathione synthase compare
IAI47_21765 -1.1 -1.7 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_08430 -1.1 -3.3 dihydroneopterin triphosphate diphosphatase compare
IAI47_03805 -1.1 -3.7 FAD assembly factor SdhE compare
IAI47_16520 -1.1 -6.5 hypothetical protein compare
IAI47_16010 -1.1 -8.0 3-isopropylmalate dehydratase large subunit compare
IAI47_12935 -1.1 -5.3 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_10840 -1.1 -3.3 pyruvate kinase PykF compare
IAI47_15540 -1.1 -6.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_02465 -1.0 -8.5 metalloprotease TldD compare
IAI47_00920 -1.0 -7.8 argininosuccinate lyase compare
IAI47_11200 -1.0 -3.0 DotU family type IV/VI secretion system protein compare
IAI47_03730 -1.0 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_09040 -1.0 -0.6 NAD-dependent epimerase compare
IAI47_18480 -1.0 -5.9 lipid III flippase WzxE compare
IAI47_18490 -1.0 -3.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_18385 -1.0 -6.5 magnesium/cobalt transporter CorA compare
IAI47_21035 -1.0 -2.5 TetR/AcrR family transcriptional regulator compare
IAI47_07525 -1.0 -2.1 conjugal transfer protein TraD compare
IAI47_07000 -1.0 -6.0 UDP-glucose 4-epimerase GalE compare
IAI47_04950 -0.9 -5.2 nitrogen regulatory protein P-II compare
IAI47_16365 -0.9 -5.6 ribosomal protein S18-alanine N-acetyltransferase compare
IAI47_06325 -0.9 -4.2 acetate kinase compare
IAI47_01550 -0.9 -5.4 cell division protein FtsX compare
IAI47_04425 -0.9 -5.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_01475 -0.9 -4.7 MurR/RpiR family transcriptional regulator compare
IAI47_05765 -0.9 -2.4 hypothetical protein compare
IAI47_19690 -0.9 -1.1 hypothetical protein compare
IAI47_16600 -0.9 -1.3 tRNA-OTHER compare
IAI47_16005 -0.9 -5.7 3-isopropylmalate dehydrogenase compare
IAI47_03665 -0.9 -4.0 agmatinase compare
IAI47_06900 -0.9 -2.0 phosphatase PAP2 family protein compare
IAI47_11475 -0.9 -1.1 hypothetical protein compare
IAI47_05520 -0.9 -1.0 tRNA-Ala compare
IAI47_01840 -0.9 -3.5 ribosome-associated heat shock protein Hsp15 compare
IAI47_05140 -0.9 -3.6 DUF2633 family protein compare
IAI47_16015 -0.9 -3.3 3-isopropylmalate dehydratase small subunit compare
IAI47_02380 -0.9 -1.8 DNA-binding transcriptional regulator Fis compare
IAI47_04120 -0.9 -7.3 GTP diphosphokinase compare
IAI47_02765 -0.9 -6.3 metalloprotease PmbA compare
IAI47_00430 -0.9 -6.7 DNA polymerase I compare
IAI47_12950 -0.9 -6.7 ATP-dependent Clp protease adapter ClpS compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_all64 in Pantoea sp. MT58

For carbon source Ying_all64 across organisms