Experiment set11S554 for Pantoea sp. MT58

Compare to:

Ying_all64 rep A; time point 3

200 most detrimental genes:

  gene name fitness t score description  
IAI47_09245 +2.4 13.2 YmiA family putative membrane protein compare
IAI47_13725 +2.0 10.4 cytochrome ubiquinol oxidase subunit I compare
IAI47_08285 +1.8 12.0 flagellar transcriptional regulator FlhC compare
IAI47_12925 +1.7 6.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13720 +1.6 6.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_08280 +1.6 11.8 flagellar transcriptional regulator FlhD compare
IAI47_07980 +1.6 9.0 flagellar type III secretion system pore protein FliP compare
IAI47_17215 +1.5 2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_03610 +1.5 6.3 YqgE/AlgH family protein compare
IAI47_05525 +1.5 2.4 tRNA-Ala compare
IAI47_11415 +1.4 1.9 hypothetical protein compare
IAI47_07970 +1.3 8.5 flagellar type III secretion system protein FliR compare
IAI47_07350 +1.3 1.0 hypothetical protein compare
IAI47_12160 +1.3 8.3 flagellar basal body rod protein FlgC compare
IAI47_07905 +1.3 1.2 Arc family DNA-binding protein compare
IAI47_12135 +1.3 10.0 flagellar basal body L-ring protein FlgH compare
IAI47_12140 +1.3 7.3 flagellar basal-body rod protein FlgG compare
IAI47_08020 +1.3 8.6 flagellar assembly protein FliH compare
IAI47_07995 +1.2 9.4 flagellar motor switch protein FliM compare
IAI47_12790 +1.2 1.0 chromosome partition protein MukE compare
IAI47_06675 +1.2 2.3 DUF1232 domain-containing protein compare
IAI47_12125 +1.2 8.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_08015 +1.2 8.1 flagellum-specific ATP synthase FliI compare
IAI47_03400 +1.2 6.1 deoxyribose-phosphate aldolase compare
IAI47_00540 +1.2 2.3 hypothetical protein compare
IAI47_12150 +1.2 9.2 flagellar hook protein FlgE compare
IAI47_11210 +1.1 8.4 type VI secretion system-associated protein TagF compare
IAI47_12130 +1.1 8.9 flagellar basal body P-ring protein FlgI compare
IAI47_08030 +1.1 8.4 flagellar M-ring protein FliF compare
IAI47_07975 +1.1 4.8 flagellar biosynthesis protein FliQ compare
IAI47_08010 +1.1 7.8 flagella biosynthesis chaperone FliJ compare
IAI47_12155 +1.1 8.5 flagellar hook assembly protein FlgD compare
IAI47_07985 +1.1 7.6 flagellar biosynthetic protein FliO compare
IAI47_06565 +1.1 1.0 YejL family protein compare
IAI47_12145 +1.1 6.5 flagellar basal body rod protein FlgF compare
IAI47_08345 +1.1 8.5 flagellar type III secretion system protein FlhB compare
IAI47_00445 +1.1 8.2 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_08135 +1.1 7.2 flagellar export chaperone FliS compare
IAI47_08145 +1.1 9.1 flagellin FliC compare
IAI47_00825 +1.1 8.6 glycerol kinase GlpK compare
IAI47_08350 +1.1 8.0 flagellar biosynthesis protein FlhA compare
IAI47_02605 +1.0 7.0 protease modulator HflC compare
IAI47_12170 +1.0 7.0 flagellar basal body P-ring formation protein FlgA compare
IAI47_07990 +1.0 5.6 flagellar motor switch protein FliN compare
IAI47_08035 +1.0 2.6 flagellar hook-basal body complex protein FliE compare
IAI47_12165 +1.0 6.0 flagellar basal body rod protein FlgB compare
IAI47_14555 +1.0 3.3 hemolysin expression modulator Hha compare
IAI47_08000 +1.0 5.6 flagellar basal body-associated protein FliL compare
IAI47_08290 +1.0 6.8 flagellar motor stator protein MotA compare
IAI47_08295 +0.9 7.3 flagellar motor protein MotB compare
IAI47_00760 +0.9 3.6 envelope stress response regulator transcription factor CpxR compare
IAI47_08025 +0.9 6.4 flagellar motor switch protein FliG compare
IAI47_16320 +0.9 5.4 DNA-binding transcriptional repressor DeoR compare
IAI47_08005 +0.9 6.5 flagellar hook-length control protein FliK compare
IAI47_12930 +0.9 3.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_06940 +0.9 0.8 tyrosine-protein kinase Wzc compare
IAI47_15995 +0.9 1.0 leu operon leader peptide compare
IAI47_02600 +0.9 6.1 FtsH protease activity modulator HflK compare
IAI47_13050 +0.9 2.2 YbjN domain-containing protein compare
IAI47_01820 +0.8 4.8 two-component system response regulator OmpR compare
IAI47_11215 +0.8 6.6 type VI secretion system-associated FHA domain protein TagH compare
IAI47_09850 +0.8 6.1 beta-lactamase compare
IAI47_08105 +0.8 1.5 DinI family protein compare
IAI47_12375 +0.8 1.1 acyl carrier protein compare
IAI47_00770 +0.8 0.7 general stress protein compare
IAI47_02900 +0.8 4.4 transcriptional regulator ExuR compare
IAI47_12410 +0.8 3.3 MarR family transcriptional regulator compare
IAI47_11220 +0.8 4.5 serine/threonine-protein phosphatase compare
IAI47_08160 +0.8 4.8 RNA polymerase sigma factor FliA compare
IAI47_15895 +0.7 1.8 secA regulator SecM compare
IAI47_07005 +0.7 2.1 glycosyltransferase family 4 protein compare
IAI47_17580 +0.7 4.2 hypothetical protein compare
IAI47_10825 +0.7 0.7 tRNA-Val compare
IAI47_18580 +0.7 5.7 insulinase family protein compare
IAI47_17050 +0.7 3.2 preprotein translocase subunit SecG compare
IAI47_12705 +0.7 5.1 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_17630 +0.7 5.3 amidohydrolase compare
IAI47_10550 +0.7 2.5 two-component-system connector protein YcgZ compare
IAI47_08800 +0.7 1.7 YoaH family protein compare
IAI47_20680 +0.7 2.6 hypothetical protein compare
IAI47_09580 +0.7 2.9 FNR family transcription factor compare
IAI47_11695 +0.7 3.8 type VI secretion system lipoprotein TssJ compare
IAI47_14185 +0.7 3.2 DUF1349 domain-containing protein compare
IAI47_00830 +0.7 4.6 aquaporin family protein compare
IAI47_05755 +0.7 2.1 hypothetical protein compare
IAI47_15730 +0.7 4.5 D-threonate 4-phosphate dehydrogenase compare
IAI47_18815 +0.7 3.6 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_10430 +0.6 1.6 hypothetical protein compare
IAI47_12115 +0.6 4.5 flagellar hook-associated protein FlgL compare
IAI47_06145 +0.6 3.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
IAI47_10835 +0.6 0.6 tRNA-Val compare
IAI47_13405 +0.6 3.7 DedA family protein compare
IAI47_15025 +0.6 1.1 transcriptional regulator LldR compare
IAI47_19355 +0.6 2.8 response regulator compare
IAI47_05580 +0.6 0.6 membrane protein YpdK compare
IAI47_07480 +0.6 1.0 hypothetical protein compare
IAI47_15095 +0.6 2.7 hypothetical protein compare
IAI47_11850 +0.6 2.3 hypothetical protein compare
IAI47_13075 +0.6 3.2 hypothetical protein compare
IAI47_11685 +0.6 3.9 DotU family type VI secretion system protein compare
IAI47_07890 +0.6 1.6 DgsA anti-repressor MtfA compare
IAI47_09595 +0.6 4.3 aromatic acid/H+ symport family MFS transporter compare
IAI47_02430 +0.6 5.2 RNase E specificity factor CsrD compare
IAI47_02850 +0.6 3.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_07555 +0.6 4.1 sugar ABC transporter substrate-binding protein compare
IAI47_05420 +0.6 0.7 PTS glucose transporter subunit IIA compare
IAI47_04575 +0.6 4.5 spermidine N1-acetyltransferase compare
IAI47_14635 +0.6 4.5 peptidylprolyl isomerase compare
IAI47_02010 +0.6 2.9 taurine ABC transporter permease TauC compare
IAI47_03570 +0.6 1.7 YggL family protein compare
IAI47_11115 +0.6 1.4 hypothetical protein compare
IAI47_03130 +0.6 3.3 DUF1190 family protein compare
IAI47_07560 +0.6 3.9 sugar ABC transporter ATP-binding protein compare
IAI47_03235 +0.6 2.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_06845 +0.6 4.3 tRNA 5-hydroxyuridine modification protein YegQ compare
IAI47_12120 +0.6 4.3 flagellar hook-associated protein FlgK compare
IAI47_20250 +0.6 1.1 DeoR family transcriptional regulator compare
IAI47_04855 +0.6 1.4 anti-sigma-E factor RseA compare
IAI47_17560 +0.6 0.6 ROK family transcriptional regulator compare
IAI47_02595 +0.5 3.8 GTPase HflX compare
IAI47_08140 +0.5 4.3 flagellar filament capping protein FliD compare
IAI47_05630 +0.5 1.6 hypothetical protein compare
IAI47_07790 +0.5 1.3 ribose 1,5-bisphosphokinase compare
IAI47_21180 +0.5 1.2 IS6 family transposase compare
IAI47_10565 +0.5 1.4 DUF4113 domain-containing protein compare
IAI47_01750 +0.5 2.5 glycerol-3-phosphate dehydrogenase compare
IAI47_06650 +0.5 3.3 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_12610 +0.5 3.2 DUF2057 family protein compare
IAI47_01825 +0.5 3.6 two-component system sensor histidine kinase EnvZ compare
IAI47_07955 +0.5 1.5 protein DsrB compare
IAI47_12220 +0.5 2.3 DNA damage-inducible protein I compare
IAI47_12215 +0.5 3.6 dihydroorotase compare
IAI47_15425 +0.5 2.2 Rho-binding antiterminator compare
IAI47_10435 +0.5 2.0 transcription modulator YdgT compare
IAI47_09155 +0.5 3.5 outer membrane protein OmpW compare
IAI47_01740 +0.5 1.2 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_12180 +0.5 2.8 flagellar export chaperone FlgN compare
IAI47_09105 +0.5 1.6 YciY family protein compare
IAI47_10455 +0.5 1.8 electron transport complex subunit RsxC compare
IAI47_17995 +0.5 3.0 glyoxylate bypass operon transcriptional repressor IclR compare
IAI47_07485 +0.5 1.5 DUF4756 family protein compare
IAI47_04865 +0.5 1.0 SoxR-reducing system protein RseC compare
IAI47_09900 +0.5 2.0 type II toxin-antitoxin system antitoxin HipB compare
IAI47_14910 +0.5 2.7 recombination-associated protein RdgC compare
IAI47_14180 +0.5 3.4 DUF481 domain-containing protein compare
IAI47_08740 +0.5 2.5 DUF2627 domain-containing protein compare
IAI47_08880 +0.5 3.0 fatty acid metabolism transcriptional regulator FadR compare
IAI47_08670 +0.5 1.8 DUF1272 domain-containing protein compare
IAI47_18620 +0.5 2.9 cellulose synthase operon protein YhjQ compare
IAI47_19445 +0.5 2.8 LysR family transcriptional regulator compare
IAI47_09185 +0.5 2.3 glutamine amidotransferase compare
IAI47_12750 +0.5 3.3 nicotinate phosphoribosyltransferase compare
IAI47_10785 +0.5 3.5 C40 family peptidase compare
IAI47_05705 +0.5 1.9 DNA polymerase III subunit theta compare
IAI47_20500 +0.5 2.9 type II toxin-antitoxin system YhaV family toxin compare
IAI47_10015 +0.5 3.0 TIM barrel protein compare
IAI47_17870 +0.5 3.9 conjugal transfer protein TraF compare
IAI47_03950 +0.5 1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_07450 +0.5 1.5 winged helix-turn-helix domain-containing protein compare
IAI47_21505 +0.5 1.6 DUF2256 domain-containing protein compare
IAI47_15240 +0.5 2.2 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
IAI47_12190 +0.5 2.7 Gfo/Idh/MocA family oxidoreductase compare
IAI47_13640 +0.5 1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_03945 +0.5 2.1 DUF2509 family protein compare
IAI47_17285 +0.5 1.3 entericidin A/B family lipoprotein compare
IAI47_11300 +0.5 1.6 stress-induced protein YchH compare
IAI47_01480 +0.5 3.7 5-dehydro-2-deoxygluconokinase compare
IAI47_15880 +0.4 1.0 DNA gyrase inhibitor YacG compare
IAI47_14145 +0.4 2.3 hypothetical protein compare
IAI47_17550 +0.4 2.3 GNAT family N-acetyltransferase compare
IAI47_09675 +0.4 1.2 YoaK family small membrane protein compare
IAI47_06500 +0.4 2.8 TolC family outer membrane protein compare
IAI47_06445 +0.4 1.9 2Fe-2S ferredoxin-like protein compare
IAI47_15105 +0.4 1.0 hypothetical protein compare
IAI47_02585 +0.4 1.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_03225 +0.4 2.3 TRAP transporter small permease compare
IAI47_21500 +0.4 2.2 H-NS histone family protein compare
IAI47_07530 +0.4 2.0 type III restriction-modification system endonuclease compare
IAI47_20320 +0.4 2.8 alpha/beta hydrolase compare
IAI47_15460 +0.4 1.3 ribonuclease HII compare
IAI47_00320 +0.4 3.1 ATPase RavA stimulator ViaA compare
IAI47_13500 +0.4 2.6 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
IAI47_16375 +0.4 3.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_13230 +0.4 2.2 ATP-binding cassette domain-containing protein compare
IAI47_09550 +0.4 1.9 hypothetical protein compare
IAI47_08885 +0.4 3.4 SpoVR family protein compare
IAI47_07025 +0.4 1.7 glycosyltransferase family 4 protein compare
IAI47_10275 +0.4 3.2 hypothetical protein compare
IAI47_01470 +0.4 3.4 5-deoxy-glucuronate isomerase compare
IAI47_14365 +0.4 1.3 ABC transporter ATP-binding protein compare
IAI47_18560 +0.4 2.6 cyclic-guanylate-specific phosphodiesterase compare
IAI47_05770 +0.4 1.5 hypothetical protein compare
IAI47_01490 +0.4 2.7 Gfo/Idh/MocA family oxidoreductase compare
IAI47_05600 +0.4 2.1 universal stress protein compare
IAI47_15715 +0.4 3.3 adenosylmethionine decarboxylase compare
IAI47_03565 +0.4 2.4 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
IAI47_12885 +0.4 2.5 pyruvate formate lyase 1-activating protein compare
IAI47_01980 +0.4 2.2 YheU family protein compare
IAI47_01355 +0.4 2.1 universal stress protein UspA compare
IAI47_20690 +0.4 1.5 ASCH domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_all64 in Pantoea sp. MT58

For carbon source Ying_all64 across organisms