Experiment set11S522 for Enterobacter sp. TBS_079
M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Group: mixed communityMedia: M9 + M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Culturing: Enterobacter_TBS_079_ML3, agar plate, Aerobic, at 30 (C), (Solid)
By: on 3/19/24
Media components: 4 g/L D-Glucose, 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride, 1 g/L Ammonium chloride
Specific Phenotypes
For 25 genes in this experiment
For mixed community M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA-replication | 1 |
| Entner-Doudoroff Pathway | 1 |
| Glycolysis and Gluconeogenesis | 1 |
| Protein chaperones | 1 |
| Proteolysis in bacteria, ATP-dependent | 1 |
| Transcription factors bacterial | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Galactose metabolism
- Purine metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Streptomycin biosynthesis
- Lipopolysaccharide biosynthesis
- Folate biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
- mTOR signaling pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| trehalose degradation II (cytosolic) | 2 | 2 | 1 |
| trehalose degradation I (low osmolarity) | 2 | 2 | 1 |
| trehalose degradation IV | 3 | 3 | 1 |
| GDP-α-D-glucose biosynthesis | 3 | 2 | 1 |
| trehalose degradation V | 3 | 2 | 1 |
| sucrose degradation III (sucrose invertase) | 4 | 4 | 1 |
| glucose and glucose-1-phosphate degradation | 5 | 5 | 1 |
| glycogen degradation II | 6 | 4 | 1 |
| UDP-N-acetyl-D-glucosamine biosynthesis II | 6 | 4 | 1 |
| UDP-N-acetyl-D-galactosamine biosynthesis II | 7 | 5 | 1 |
| glycogen degradation I | 8 | 8 | 1 |
| sucrose biosynthesis II | 8 | 6 | 1 |
| chitin derivatives degradation | 8 | 4 | 1 |
| 1,3-propanediol biosynthesis (engineered) | 9 | 7 | 1 |
| chitin biosynthesis | 9 | 6 | 1 |
| glycolysis III (from glucose) | 11 | 11 | 1 |
| homolactic fermentation | 12 | 11 | 1 |
| Bifidobacterium shunt | 15 | 12 | 1 |
| heterolactic fermentation | 18 | 15 | 1 |