Experiment set11S520 for Enterobacter sp. TBS_079
0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Group: mixed communityMedia: LB (0.1x) + 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Culturing: Enterobacter_TBS_079_ML3, agar plate, Aerobic, at 30 (C), (Solid)
By: on 3/19/24
Media components: 1 g/L Tryptone, 0.5 g/L Yeast Extract, 0.5 g/L Sodium Chloride (final concentrations)
Specific Phenotypes
For 14 genes in this experiment
For mixed community 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Glycine, serine and threonine metabolism
- Methionine metabolism
- Lysine biosynthesis
- Lysine degradation
- Arginine and proline metabolism
- Aminophosphonate metabolism
- Glycosaminoglycan degradation
- Caprolactam degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycogen biosynthesis I (from ADP-D-Glucose) | 4 | 4 | 2 |
| starch biosynthesis | 10 | 6 | 3 |
| ectoine degradation | 4 | 1 | 1 |
| glycogen biosynthesis II (from UDP-D-Glucose) | 4 | 1 | 1 |
| ectoine biosynthesis | 5 | 3 | 1 |
| glucosylglycerol biosynthesis | 5 | 3 | 1 |
| norspermidine biosynthesis | 6 | 4 | 1 |
| rhizobactin 1021 biosynthesis | 7 | 2 | 1 |
| superpathway of polyamine biosynthesis III | 8 | 4 | 1 |
| glycogen biosynthesis III (from α-maltose 1-phosphate) | 8 | 4 | 1 |
| peptidoglycan recycling II | 10 | 7 | 1 |
| pyoverdine I biosynthesis | 11 | 2 | 1 |
| baumannoferrin biosynthesis | 11 | 2 | 1 |
| peptidoglycan recycling I | 14 | 14 | 1 |