Experiment set11S506 for Enterobacter sp. TBS_079

Compare to:

M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

200 most detrimental genes:

  gene name fitness t score description  
MPMX20_03321 +5.8 2.4 Acetyltransferase YpeA compare
MPMX20_03517 +5.3 1.9 hypothetical protein compare
MPMX20_03814 +4.8 2.7 hypothetical protein compare
MPMX20_02718 +4.7 2.2 putative Nudix hydrolase NudL compare
MPMX20_03769 +4.4 2.1 Cell division protein ZapA compare
MPMX20_03590 +4.1 2.5 hypothetical protein compare
MPMX20_02707 +3.4 4.0 Septum site-determining protein MinC compare
MPMX20_02072 +3.3 2.3 hypothetical protein compare
MPMX20_01608 +3.1 2.2 Cell division inhibitor SulA compare
MPMX20_03338 +3.0 3.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00785 +3.0 2.5 D-alanine--D-alanine ligase B compare
MPMX20_03008 +2.9 2.3 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_00793 +2.9 2.8 DNA gyrase inhibitor YacG compare
MPMX20_02826 +2.7 3.0 Cold shock-like protein CspB compare
MPMX20_00813 +2.7 2.5 hypothetical protein compare
MPMX20_03850 +2.7 1.9 Biopolymer transport protein ExbD compare
MPMX20_01071 +2.6 3.1 Adenine phosphoribosyltransferase compare
MPMX20_01549 +2.6 1.7 ATP-binding/permease protein CydD compare
MPMX20_00626 +2.5 3.5 hypothetical protein compare
MPMX20_04067 +2.4 3.9 Lipoprotein NlpI compare
MPMX20_02494 +2.3 6.5 Orotidine 5'-phosphate decarboxylase compare
MPMX20_04595 +2.2 1.5 Glutamine synthetase compare
MPMX20_04010 +2.2 2.0 Inner membrane protein YqjF compare
MPMX20_03655 +2.2 15.7 Signal transduction histidine-protein kinase BarA compare
MPMX20_01028 +2.2 2.4 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_00093 +2.2 6.3 Orotate phosphoribosyltransferase compare
MPMX20_03979 +2.1 4.3 Transcriptional regulator YqjI compare
MPMX20_01305 +2.0 2.5 Glutamate/aspartate import permease protein GltJ compare
MPMX20_01741 +2.0 5.6 Dihydroorotase compare
MPMX20_03309 +2.0 2.9 Phosphocarrier protein HPr compare
MPMX20_03382 +2.0 1.3 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04243 +2.0 2.6 hypothetical protein compare
MPMX20_04343 +2.0 4.3 hypothetical protein compare
MPMX20_02634 +2.0 2.2 Protein YchQ compare
MPMX20_02489 +1.9 3.3 Fatty acid oxidation complex subunit alpha compare
MPMX20_03334 +1.9 2.6 hypothetical protein compare
MPMX20_02035 +1.9 5.8 Fumarate and nitrate reduction regulatory protein compare
MPMX20_01785 +1.9 1.4 hypothetical protein compare
MPMX20_00739 +1.9 5.4 Carbamoyl-phosphate synthase small chain compare
MPMX20_01984 +1.8 2.4 Ribonuclease T compare
MPMX20_00720 +1.8 1.6 Chaperone protein DnaK compare
MPMX20_04642 +1.8 1.7 Phosphate import ATP-binding protein PstB compare
MPMX20_02736 +1.8 2.6 Protease HtpX compare
MPMX20_02058 +1.8 1.7 hypothetical protein compare
MPMX20_01596 +1.8 12.3 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_04254 +1.8 4.4 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX20_02813 +1.7 4.4 hypothetical protein compare
MPMX20_01548 +1.7 1.2 putative ABC transporter ATP-binding/permease protein compare
MPMX20_02478 +1.7 3.3 Putrescine export system ATP-binding protein SapF compare
MPMX20_02839 +1.7 12.1 Response regulator UvrY compare
MPMX20_03201 +1.6 1.8 Isochorismate synthase MenF compare
MPMX20_03947 +1.6 1.7 hypothetical protein compare
MPMX20_03579 +1.6 2.9 Regulatory protein RecX compare
MPMX20_00918 +1.6 1.8 Na(+)-translocating NADH-quinone reductase subunit E compare
MPMX20_03080 +1.6 3.7 Thiol-disulfide oxidoreductase ResA compare
MPMX20_01768 +1.5 1.5 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_01362 +1.5 1.5 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_02992 +1.5 5.7 hypothetical protein compare
MPMX20_04497 +1.5 3.3 HTH-type transcriptional regulator GltC compare
MPMX20_02825 +1.5 2.6 Cold shock-like protein CspB compare
MPMX20_00844 +1.5 1.6 Vitamin B12-binding protein compare
MPMX20_02305 +1.5 1.5 hypothetical protein compare
MPMX20_04249 +1.5 4.8 Phosphoribosyl-dephospho-CoA transferase compare
MPMX20_03217 +1.5 2.3 NADH-quinone oxidoreductase subunit B compare
MPMX20_03177 +1.5 6.1 Transcriptional regulatory protein RcsB compare
MPMX20_00544 +1.4 4.4 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_01245 +1.4 2.7 Enterobactin exporter EntS compare
MPMX20_00819 +1.4 1.4 Hypoxanthine phosphoribosyltransferase compare
MPMX20_01570 +1.4 0.9 Integration host factor subunit beta compare
MPMX20_01030 +1.4 1.9 Lon protease compare
MPMX20_01505 +1.4 1.5 Arginine ABC transporter permease protein ArtQ compare
MPMX20_01015 +1.4 1.9 Protein/nucleic acid deglycase 3 compare
MPMX20_02015 +1.4 1.8 Adenosine deaminase compare
MPMX20_00762 +1.4 1.8 Thiamine-binding periplasmic protein compare
MPMX20_04622 +1.4 3.8 Protein ViaA compare
MPMX20_02574 +1.4 0.9 putative intracellular septation protein A compare
MPMX20_03923 +1.4 2.3 hypothetical protein compare
MPMX20_01593 +1.4 1.6 Alkanesulfonate monooxygenase compare
MPMX20_04469 +1.4 1.3 Adenylate cyclase compare
MPMX20_04275 +1.4 1.3 Ribulose-phosphate 3-epimerase compare
MPMX20_03013 +1.4 3.8 dTDP-glucose 4,6-dehydratase compare
MPMX20_01488 +1.4 2.8 hypothetical protein compare
MPMX20_01268 +1.4 3.5 Methylthioribulose-1-phosphate dehydratase compare
MPMX20_01657 +1.4 1.7 5-hydroxyisourate hydrolase compare
MPMX20_03442 +1.4 4.5 Sigma-E factor regulatory protein RseB compare
MPMX20_02738 +1.4 2.9 RNA chaperone ProQ compare
MPMX20_03240 +1.4 2.7 hypothetical protein compare
MPMX20_03145 +1.3 2.8 Inner membrane ABC transporter permease protein YejE compare
MPMX20_00283 +1.3 3.0 hypothetical protein compare
MPMX20_00471 +1.3 2.1 Ascorbate-specific PTS system EIIB component compare
MPMX20_00252 +1.3 1.4 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX20_02708 +1.3 3.7 Septum site-determining protein MinD compare
MPMX20_01303 +1.3 3.9 Glutamine transport ATP-binding protein GlnQ compare
MPMX20_02394 +1.3 1.5 Tautomerase PptA compare
MPMX20_01713 +1.3 3.4 HTH-type transcriptional regulator DmlR compare
MPMX20_03027 +1.3 2.4 hypothetical protein compare
MPMX20_04273 +1.3 3.1 Tryptophan--tRNA ligase compare
MPMX20_03685 +1.3 0.9 RecBCD enzyme subunit RecC compare
MPMX20_00721 +1.3 1.8 Chaperone protein DnaJ compare
MPMX20_04605 +1.3 1.5 Protein YihD compare
MPMX20_04270 +1.3 3.2 Nitrite reductase (NADH) small subunit compare
MPMX20_01682 +1.3 1.7 Lactose operon repressor compare
MPMX20_02186 +1.3 2.0 hypothetical protein compare
MPMX20_01967 +1.3 1.8 hypothetical protein compare
MPMX20_00713 +1.2 1.9 hypothetical protein compare
MPMX20_03328 +1.2 2.7 GDP-mannose pyrophosphatase NudK compare
MPMX20_01619 +1.2 2.2 HTH-type transcriptional activator RhaS compare
MPMX20_02192 +1.2 2.0 Colistin resistance protein EmrA compare
MPMX20_04706 +1.2 3.0 hypothetical protein compare
MPMX20_02840 +1.2 7.2 hypothetical protein compare
MPMX20_03637 +1.2 5.1 Sulfate adenylyltransferase subunit 1 compare
MPMX20_04577 +1.2 4.1 Formate dehydrogenase-O iron-sulfur subunit compare
MPMX20_02409 +1.2 6.8 HTH-type transcriptional regulator McbR compare
MPMX20_04340 +1.2 1.4 Cell division ATP-binding protein FtsE compare
MPMX20_04541 +1.2 1.5 Cell division protein ZapB compare
MPMX20_00903 +1.2 3.0 Oligopeptide transport ATP-binding protein OppD compare
MPMX20_01901 +1.2 0.8 Integration host factor subunit alpha compare
MPMX20_04625 +1.2 2.7 Protein MioC compare
MPMX20_00867 +1.2 1.6 Ribonuclease HII compare
MPMX20_04699 +1.1 2.7 hypothetical protein compare
MPMX20_00424 +1.1 1.5 hypothetical protein compare
MPMX20_03292 +1.1 2.8 hypothetical protein compare
MPMX20_04251 +1.1 2.2 hypothetical protein compare
MPMX20_03738 +1.1 2.1 PTS system oligo-beta-mannoside-specific EIIB component compare
MPMX20_02953 +1.1 2.5 hypothetical protein compare
MPMX20_03783 +1.1 2.0 Acetolactate synthase isozyme 1 large subunit compare
MPMX20_02476 +1.1 1.1 Putrescine export system permease protein SapC compare
MPMX20_02309 +1.1 2.1 hypothetical protein compare
MPMX20_01361 +1.1 0.8 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_03515 +1.1 2.3 hypothetical protein compare
MPMX20_00904 +1.1 4.2 Vitamin B12 import ATP-binding protein BtuD compare
MPMX20_02729 +1.1 3.4 Cold shock-like protein CspC compare
MPMX20_02791 +1.1 5.0 hypothetical protein compare
MPMX20_03047 +1.1 2.4 dCTP deaminase compare
MPMX20_00630 +1.1 1.7 hypothetical protein compare
MPMX20_03408 +1.1 1.0 Co-chaperone protein HscB compare
MPMX20_04546 +1.1 1.5 hypothetical protein compare
MPMX20_01760 +1.1 1.5 Peptidoglycan hydrolase FlgJ compare
MPMX20_00723 +1.1 2.0 Transcriptional activator protein NhaR compare
MPMX20_01434 +1.1 1.8 putative protein YbiI compare
MPMX20_04615 +1.1 7.1 Ribokinase compare
MPMX20_01788 +1.1 1.7 Beta-hexosaminidase compare
MPMX20_03344 +1.1 1.4 Beta-barrel assembly-enhancing protease compare
MPMX20_03942 +1.1 2.5 hypothetical protein compare
MPMX20_00261 +1.1 2.0 hypothetical protein compare
MPMX20_02057 +1.1 1.7 hypothetical protein compare
MPMX20_01328 +1.1 2.7 putative lipoprotein ChiQ compare
MPMX20_01965 +1.1 2.0 Response regulator protein TmoT compare
MPMX20_02451 +1.1 1.9 L-Ala-D/L-Glu epimerase compare
MPMX20_00633 +1.1 2.5 4-hydroxyphenylacetate 3-monooxygenase reductase component compare
MPMX20_03099 +1.1 2.0 Glycine betaine-binding protein YehZ compare
MPMX20_02360 +1.0 2.4 putative D,D-dipeptide transport ATP-binding protein DdpF compare
MPMX20_00300 +1.0 1.8 Ribose import binding protein RbsB compare
MPMX20_01339 +1.0 1.7 Potassium-transporting ATPase KdpC subunit compare
MPMX20_02646 +1.0 1.1 hypothetical protein compare
MPMX20_04345 +1.0 3.2 hypothetical protein compare
MPMX20_02115 +1.0 2.6 hypothetical protein compare
MPMX20_00492 +1.0 3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX20_02757 +1.0 1.4 Glucose-6-phosphate 1-dehydrogenase compare
MPMX20_00508 +1.0 2.0 ABC transporter periplasmic-binding protein YtfQ compare
MPMX20_04060 +1.0 2.2 hypothetical protein compare
MPMX20_01991 +1.0 2.7 Superoxide dismutase [Cu-Zn] compare
MPMX20_01703 +1.0 1.5 Sodium/proline symporter compare
MPMX20_03036 +1.0 2.1 Putative acetyltransferase compare
MPMX20_02795 +1.0 2.9 hypothetical protein compare
MPMX20_04197 +1.0 1.0 Trk system potassium uptake protein TrkA compare
MPMX20_03683 +1.0 0.7 RecBCD enzyme subunit RecB compare
MPMX20_02552 +1.0 2.3 HTH-type transcriptional activator RhaR compare
MPMX20_00387 +1.0 2.2 hypothetical protein compare
MPMX20_01882 +1.0 3.4 Catalase HPII compare
MPMX20_03007 +1.0 2.3 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_03694 +1.0 1.8 DNA mismatch repair protein MutH compare
MPMX20_02665 +1.0 4.3 hypothetical protein compare
MPMX20_02016 +1.0 2.1 Protein MalY compare
MPMX20_00877 +1.0 3.3 Lipoprotein NlpE compare
MPMX20_03732 +1.0 2.2 Mannose-6-phosphate isomerase compare
MPMX20_03409 +1.0 1.4 Iron-binding protein IscA compare
MPMX20_03914 +1.0 2.9 hypothetical protein compare
MPMX20_04278 +1.0 2.1 3-dehydroquinate synthase compare
MPMX20_00914 +1.0 1.8 Na(+)-translocating NADH-quinone reductase subunit A compare
MPMX20_00740 +1.0 3.1 Carbamoyl-phosphate synthase large chain compare
MPMX20_03785 +1.0 1.7 L-aspartate dehydrogenase compare
MPMX20_00019 +1.0 1.2 hypothetical protein compare
MPMX20_04714 +1.0 8.2 hypothetical protein compare
MPMX20_01005 +1.0 2.2 Transcriptional repressor NrdR compare
MPMX20_03329 +1.0 2.5 Ferredoxin--NADP reductase compare
MPMX20_04640 +1.0 1.1 Phosphate transport system permease protein PstC compare
MPMX20_04394 +1.0 3.0 Universal stress protein B compare
MPMX20_03529 +1.0 2.7 hypothetical protein compare
MPMX20_01520 +1.0 1.8 hypothetical protein compare
MPMX20_01591 +1.0 1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX20_04001 +1.0 2.5 Uronate isomerase compare
MPMX20_00764 +0.9 0.9 hypothetical protein compare
MPMX20_01283 +0.9 1.9 Cold shock-like protein CspE compare
MPMX20_01137 +0.9 2.5 Multiple antibiotic resistance protein MarA compare
MPMX20_02950 +0.9 2.9 hypothetical protein compare
MPMX20_00122 +0.9 3.6 putative protein YibN compare
MPMX20_02645 +0.9 2.0 Ribosome-binding ATPase YchF compare
MPMX20_04302 +0.9 4.1 High-affinity gluconate transporter compare
MPMX20_02194 +0.9 2.2 Protein YdcF compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 in Enterobacter sp. TBS_079

For mixed community M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 across organisms