Experiment set11S404 for Marinobacter adhaerens HP15

monoculture; Experiment C, time point 6

Group: pro99_seawater
Media: Pro99_seawater
Culturing: Marino_ML2_MIT, bottle_100mL, Aerobic, at 24 (C), shaken=0 rpm
By: Christine Ziegler on 12/1/2024
Media components: 50 uM Sodium phosphate monobasic monohydrate, 800 uM Ammonium chloride, 1.17 uM EDTA (disodium salt), 1.18 uM Ferric chloride, 0.008 uM Zinc sulfate heptahydrate, 0.005 uM Cobalt chloride hexahydrate, 0.09 uM Manganese (II) chloride tetrahydrate, 0.003 uM Sodium Molybdate Dihydrate, 0.01 uM Sodium selenite pentahydrate, 0.01 uM Nickel (II) chloride hexahydrate, 1 X Filtered Seawater

Specific Phenotypes

For 25 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Widespread colonization island	3
Ammonia assimilation	2
DNA-replication	1
Flagellar motility	1
Flagellum	1
Fructooligosaccharides(FOS) and Raffinose Utilization	1
SigmaB stress responce regulation	1
Sucrose utilization	1
Sucrose utilization Shewanella	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Tryptophan metabolism
• Starch and sucrose metabolism
• Lipopolysaccharide biosynthesis
• Folate biosynthesis
• Biosynthesis of siderophore group nonribosomal peptides

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sucrose degradation IV (sucrose phosphorylase)	4	3	1
peptidoglycan recycling II	10	6	1
peptidoglycan recycling I	14	8	1