Experiment set11S239 for Methanococcus maripaludis S2

Compare to:

McCas_H2_complete sodium nitrite 1.04166666666667 mM

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -5.6 -1.0 ferrous iron transport protein A compare
MMP_RS03475 -5.0 -0.5 hypothetical protein compare
MMP_RS07005 -5.0 -0.5 4Fe-4S binding protein compare
MMP_RS03600 -4.8 -2.0 triose-phosphate isomerase compare
MMP_RS07545 -4.8 -0.7 HTH domain-containing protein compare
MMP_RS01500 -4.4 -1.4 CBS domain-containing protein compare
MMP_RS06630 -4.3 -0.6 UPF0058 family protein compare
MMP_RS06120 -4.3 -1.6 UPF0147 family protein compare
MMP_RS04890 -4.0 -0.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00300 -3.9 -0.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03400 -3.8 -2.0 archease compare
MMP_RS06895 -3.8 -1.3 selenocysteine-specific translation elongation factor compare
MMP_RS09020 -3.7 -1.1 hypothetical protein compare
MMP_RS01175 -3.6 -2.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08720 -3.6 -1.2 4Fe-4S binding protein compare
MMP_RS01545 -3.5 -0.8 CBS domain-containing protein compare
MMP_RS02900 -3.4 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07755 -3.3 -0.9 DUF555 domain-containing protein compare
MMP_RS06400 -3.2 -1.1 4Fe-4S binding protein compare
MMP_RS05555 -3.2 -1.2 DUF4040 domain-containing protein compare
MMP_RS07845 -3.1 -2.3 LL-diaminopimelate aminotransferase compare
MMP_RS08820 -3.1 -5.3 hypothetical protein compare
MMP_RS06350 -3.0 -5.6 HesA/MoeB/ThiF family protein compare
MMP_RS01755 -3.0 -1.0 DUF2097 domain-containing protein compare
MMP_RS04900 -3.0 -18.3 hypothetical protein compare
MMP_RS06340 -2.9 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01380 -2.7 -3.7 PHP domain-containing protein compare
MMP_RS06230 -2.7 -2.1 helix-turn-helix domain-containing protein compare
MMP_RS03640 -2.7 -3.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00810 -2.7 -6.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06035 -2.6 -8.7 glycosyltransferase family 2 protein compare
MMP_RS07635 -2.6 -5.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02195 -2.6 -2.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01610 -2.6 -2.4 hypothetical protein compare
MMP_RS05920 -2.5 -0.4 50S ribosomal protein L37e compare
MMP_RS06725 -2.5 -8.8 hypothetical protein compare
MMP_RS01020 -2.5 -0.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02240 -2.5 -2.3 methanogenesis marker 7 protein compare
MMP_RS07380 -2.4 -1.2 transcription elongation factor Spt5 compare
MMP_RS07750 -2.4 -4.0 DUF357 domain-containing protein compare
MMP_RS01955 -2.4 -1.7 hypothetical protein compare
MMP_RS03960 -2.4 -0.8 hypothetical protein compare
MMP_RS08745 -2.4 -4.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01270 -2.4 -14.0 prepilin peptidase compare
MMP_RS06295 -2.3 -5.8 methanogenesis marker 14 protein compare
MMP_RS01265 -2.3 -2.8 hypothetical protein compare
MMP_RS04775 -2.3 -2.6 adenosylhomocysteinase compare
MMP_RS00305 -2.3 -1.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS03445 -2.2 -0.7 methanogenesis marker 17 protein compare
MMP_RS06885 -2.2 -1.7 50S ribosome-binding GTPase compare
MMP_RS07820 -2.2 -3.8 UPF0104 family protein compare
MMP_RS06730 -2.2 -1.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS01195 -2.2 -1.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01700 -2.2 -0.6 dihydroxy-acid dehydratase compare
MMP_RS08300 -2.2 -0.8 metal-sulfur cluster assembly factor compare
MMP_RS00915 -2.2 -5.7 DUF116 domain-containing protein compare
MMP_RS06020 -2.2 -2.8 archaeoflavoprotein AfpA compare
MMP_RS06315 -2.2 -0.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04710 -2.2 -1.3 hypothetical protein compare
MMP_RS04720 -2.1 -2.0 DedA family protein compare
MMP_RS01575 -2.1 -6.2 aldolase compare
MMP_RS01005 -2.1 -1.0 riboflavin synthase compare
MMP_RS01795 -2.1 -1.0 methanogenesis marker 6 protein compare
MMP_RS01385 -2.1 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01290 -2.1 -8.8 class III signal peptide-containing protein compare
MMP_RS03025 -2.1 -3.9 molybdenum cofactor guanylyltransferase compare
MMP_RS01310 -2.0 -11.2 hypothetical protein compare
MMP_RS07385 -2.0 -1.9 protein translocase SEC61 complex subunit gamma compare
MMP_RS03580 -2.0 -2.3 signal recognition particle-docking protein FtsY compare
MMP_RS05345 -2.0 -5.1 hypothetical protein compare
MMP_RS00240 -2.0 -9.9 type II secretion system F family protein compare
MMP_RS00245 -2.0 -12.8 type II secretion system F family protein compare
MMP_RS06355 -2.0 -1.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01305 -1.9 -12.2 hypothetical protein compare
MMP_RS02235 -1.9 -7.2 CBS domain-containing protein compare
MMP_RS07330 -1.9 -12.6 membrane protein compare
MMP_RS00250 -1.9 -9.6 Flp pilus assembly complex ATPase component TadA compare
MMP_RS03110 -1.9 -4.5 glycosyltransferase family 2 protein compare
MMP_RS07555 -1.9 -0.5 monovalent cation/H+ antiporter subunit E compare
MMP_RS08635 -1.9 -1.2 UbiA family prenyltransferase compare
MMP_RS08855 -1.9 -5.7 hypothetical protein compare
MMP_RS03700 -1.9 -5.6 sodium:proton antiporter compare
MMP_RS02145 -1.9 -6.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS00515 -1.9 -0.6 DUF655 domain-containing protein compare
MMP_RS07710 -1.9 -4.1 cell division protein FtsZ compare
MMP_RS07390 -1.9 -1.7 cell division protein FtsZ compare
MMP_RS05845 -1.9 -1.1 tRNA-intron lyase compare
MMP_RS05635 -1.9 -7.1 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS00895 -1.8 -2.7 hypothetical protein compare
MMP_RS06925 -1.8 -1.5 ribonuclease VapC4 compare
MMP_RS03145 -1.8 -3.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01295 -1.8 -10.1 hypothetical protein compare
MMP_RS00315 -1.8 -3.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01100 -1.8 -1.0 ABC transporter ATP-binding protein compare
MMP_RS08210 -1.8 -1.4 phosphatidylglycerophosphatase A compare
MMP_RS08675 -1.8 -2.3 class III signal peptide-containing protein compare
MMP_RS08715 -1.8 -1.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03205 -1.8 -0.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06395 -1.8 -2.2 ThiF family adenylyltransferase compare
MMP_RS00320 -1.8 -1.2 class I SAM-dependent methyltransferase compare
MMP_RS01280 -1.7 -9.5 DUF515 domain-containing protein compare
MMP_RS08645 -1.7 -4.2 UPF0179 family protein compare
MMP_RS07200 -1.7 -4.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00115 -1.7 -8.1 radical SAM protein compare
MMP_RS06980 -1.7 -3.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00695 -1.7 -0.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01800 -1.7 -2.6 TIGR00303 family protein compare
MMP_RS00040 -1.7 -3.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05580 -1.7 -9.2 glycosyltransferase compare
MMP_RS04780 -1.6 -1.8 ribonuclease P compare
MMP_RS08460 -1.6 -1.4 proteasome-activating nucleotidase compare
MMP_RS04685 -1.6 -1.6 DUF126 domain-containing protein compare
MMP_RS01725 -1.6 -2.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS06675 -1.6 -5.7 ADP-specific phosphofructokinase compare
MMP_RS01960 -1.6 -0.6 hypothetical protein compare
MMP_RS01745 -1.6 -2.8 AMP phosphorylase compare
MMP_RS01285 -1.6 -6.3 hypothetical protein compare
MMP_RS05640 -1.6 -3.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05550 -1.6 -0.5 cation:proton antiporter compare
MMP_RS01225 -1.6 -2.1 DUF5379 domain-containing protein compare
MMP_RS01315 -1.6 -11.3 DUF2341 domain-containing protein compare
MMP_RS07875 -1.6 -3.2 hypothetical protein compare
MMP_RS07425 -1.6 -3.7 GTP-binding protein compare
MMP_RS02290 -1.6 -3.8 MBL fold metallo-hydrolase compare
MMP_RS04585 -1.6 -5.8 AIR synthase related protein compare
MMP_RS01365 -1.6 -2.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06865 -1.6 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS05425 -1.5 -2.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03095 -1.5 -3.1 diphthine synthase compare
MMP_RS07605 -1.5 -1.9 diadenylate cyclase compare
MMP_RS07445 -1.5 -5.9 helix-turn-helix domain-containing protein compare
MMP_RS07075 -1.5 -2.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS03015 -1.5 -4.7 GTP 3' 8-cyclase MoaA compare
MMP_RS08860 -1.5 -3.1 MinD/ParA family protein compare
MMP_RS00720 -1.5 -4.6 metal-dependent hydrolase compare
MMP_RS01220 -1.5 -5.0 hypothetical protein compare
MMP_RS00985 -1.5 -2.3 CDC48 family AAA ATPase compare
MMP_RS08435 -1.4 -1.1 Era-like GTP-binding protein compare
MMP_RS07695 -1.4 -3.9 DUF3236 domain-containing protein compare
MMP_RS07600 -1.4 -1.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03125 -1.4 -3.3 cell division ATPase MinD compare
MMP_RS05245 -1.4 -4.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06625 -1.4 -0.8 DNA primase compare
MMP_RS01325 -1.4 -1.1 dihydroneopterin aldolase family protein compare
MMP_RS05515 -1.4 -4.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03140 -1.4 -4.7 hypothetical protein compare
MMP_RS00735 -1.4 -1.9 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00730 -1.3 -3.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06105 -1.3 -3.3 hydrogenase maturation peptidase HycI compare
MMP_RS03080 -1.3 -1.7 universal stress protein compare
MMP_RS00725 -1.3 -2.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01875 -1.3 -5.4 N-acetyltransferase compare
MMP_RS01830 -1.3 -0.8 tRNA-Val compare
MMP_RS02930 -1.3 -1.6 class I SAM-dependent methyltransferase compare
MMP_RS03250 -1.3 -2.2 MJ1244 family protein compare
MMP_RS04485 -1.3 -5.8 putative beta-lysine N-acetyltransferase compare
MMP_RS06215 -1.3 -1.6 30S ribosomal protein S6e compare
MMP_RS05445 -1.3 -3.7 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01840 -1.3 -4.2 TIGR00289 family protein compare
MMP_RS04850 -1.3 -7.2 UPF0254 family protein compare
MMP_RS01900 -1.3 -6.0 hypothetical protein compare
MMP_RS05540 -1.2 -2.6 hypothetical protein compare
MMP_RS05295 -1.2 -7.3 minichromosome maintenance protein MCM compare
MMP_RS08595 -1.2 -0.6 flagellar protein C compare
MMP_RS06285 -1.2 -1.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02175 -1.2 -0.4 DUF1611 domain-containing protein compare
MMP_RS06130 -1.2 -2.0 peptidylprolyl isomerase compare
MMP_RS07420 -1.2 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS02135 -1.2 -1.9 DUF5612 domain-containing protein compare
MMP_RS00900 -1.2 -0.9 50S ribosomal protein L39e compare
MMP_RS03020 -1.2 -2.9 peptidylprolyl isomerase compare
MMP_RS07730 -1.2 -0.9 pyruvate synthase subunit beta compare
MMP_RS06940 -1.2 -1.9 polyprenyl diphosphate synthase compare
MMP_RS08195 -1.2 -5.3 hypothetical protein compare
MMP_RS05695 -1.2 -2.7 phospholipase D-like domain-containing protein compare
MMP_RS06555 -1.2 -1.3 cupin domain-containing protein compare
MMP_RS06475 -1.2 -1.9 FAD-dependent oxidoreductase compare
MMP_RS08155 -1.1 -3.0 hypothetical protein compare
MMP_RS00685 -1.1 -1.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08500 -1.1 -2.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS04690 -1.1 -2.0 class III signal peptide-containing protein compare
MMP_RS01045 -1.1 -3.5 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS09045 -1.1 -5.3 class III signal peptide-containing protein compare
MMP_RS06600 -1.1 -0.6 class III signal peptide-containing protein compare
MMP_RS00310 -1.1 -4.0 CBS domain-containing protein compare
MMP_RS04360 -1.1 -2.2 hypothetical protein compare
MMP_RS07685 -1.0 -3.2 TIGR01212 family radical SAM protein compare
MMP_RS00520 -1.0 -0.8 RNA polymerase Rpb4 family protein compare
MMP_RS01895 -1.0 -4.8 flippase compare
MMP_RS06110 -1.0 -1.5 ATP-dependent protease LonB compare
MMP_RS02940 -1.0 -3.3 TatD family hydrolase compare
MMP_RS07700 -1.0 -3.5 DUF1188 domain-containing protein compare
MMP_RS08355 -1.0 -1.9 Na(+)/H(+) antiporter subunit B compare
MMP_RS07575 -1.0 -1.9 RNA ligase partner protein compare
MMP_RS01665 -1.0 -1.9 DUF2111 domain-containing protein compare
MMP_RS07190 -1.0 -3.8 chromosome segregation protein SMC compare
MMP_RS05965 -1.0 -1.7 carboxymuconolactone decarboxylase family protein compare
MMP_RS03035 -1.0 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02020 -1.0 -1.9 gamma-glutamylcyclotransferase compare
MMP_RS02610 -1.0 -1.7 DUF2162 domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Methanococcus maripaludis S2

For stress Sodium nitrite across organisms