Experiment set11IT092 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and L-Glutamine (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS27365 -5.4 -10.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04470 -5.0 -13.2 histidinol dehydrogenase compare
PFLU_RS06055 -4.8 -3.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00180 -4.8 -6.6 tryptophan synthase subunit beta compare
PFLU_RS27370 -4.6 -15.7 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.6 -17.2 homoserine O-acetyltransferase compare
PFLU_RS20540 -4.5 -14.2 phosphoribosylanthranilate isomerase compare
PFLU_RS01620 -4.5 -12.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20510 -4.5 -18.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28390 -4.5 -14.1 methionine biosynthesis protein MetW compare
PFLU_RS04465 -4.4 -12.2 ATP phosphoribosyltransferase compare
PFLU_RS00175 -4.4 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS02590 -4.2 -11.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -4.2 -14.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20575 -4.1 -9.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS07230 -4.1 -12.9 RNA polymerase sigma factor RpoE compare
PFLU_RS06310 -4.0 -10.1 sigma E protease regulator RseP compare
PFLU_RS01605 -4.0 -12.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS25585 -3.9 -3.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS01900 -3.9 -11.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS09055 -3.6 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS20580 -3.6 -15.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS25715 -3.6 -11.6 RNA polymerase-binding protein DksA compare
PFLU_RS21495 -3.5 -5.9 TlpA family protein disulfide reductase compare
PFLU_RS31440 -3.4 -3.3 hypothetical protein compare
PFLU_RS20565 -3.3 -14.8 3-isopropylmalate dehydrogenase compare
PFLU_RS28695 -3.3 -7.7 phosphoglycerate dehydrogenase compare
PFLU_RS24025 -3.1 -12.7 quinolinate synthase NadA compare
PFLU_RS01625 -3.1 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02365 -3.0 -14.4 glycosyltransferase compare
PFLU_RS02275 -2.9 -3.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS20515 -2.8 -6.1 amidophosphoribosyltransferase compare
PFLU_RS18530 -2.7 -6.2 DNA translocase FtsK compare
PFLU_RS04370 -2.7 -10.7 superoxide dismutase compare
PFLU_RS03970 -2.7 -9.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS14550 -2.6 -8.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS00440 -2.5 -14.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS12915 -2.5 -3.8 methyltransferase domain-containing protein compare
PFLU_RS25755 -2.4 -4.8 pantoate--beta-alanine ligase compare
PFLU_RS27475 -2.3 -10.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS19165 -2.3 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25595 -2.3 -3.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS07245 -2.3 -9.0 DegQ family serine endoprotease compare
PFLU_RS24765 -2.2 -15.1 2-isopropylmalate synthase compare
PFLU_RS01895 -2.2 -5.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS08675 -2.1 -3.7 DsbE family thiol:disulfide interchange protein compare
PFLU_RS03755 -2.1 -9.0 PDZ domain-containing protein compare
PFLU_RS08655 -2.1 -3.9 heme ABC transporter permease compare
PFLU_RS01390 -2.0 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS02565 -1.9 -6.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS01610 -1.9 -9.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28615 -1.9 -9.4 heavy metal translocating P-type ATPase compare
PFLU_RS18395 -1.9 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS15410 -1.9 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01645 -1.9 -8.8 S41 family peptidase compare
PFLU_RS04435 -1.9 -6.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25760 -1.8 -9.2 glucose-6-phosphate isomerase compare
PFLU_RS19170 -1.8 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24555 -1.8 -5.8 thioredoxin fold domain-containing protein compare
PFLU_RS29400 -1.7 -2.9 DUF1127 domain-containing protein compare
PFLU_RS25875 -1.7 -4.0 transcription elongation factor GreA compare
PFLU_RS18505 -1.7 -7.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28325 -1.7 -6.5 energy transducer TonB compare
PFLU_RS02625 -1.7 -10.1 ribonuclease R compare
PFLU_RS05630 -1.6 -1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29560 -1.6 -1.2 hypothetical protein compare
PFLU_RS05780 -1.6 -7.9 helix-turn-helix transcriptional regulator compare
PFLU_RS13580 -1.5 -4.2 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS12980 -1.5 -6.9 nitrite/sulfite reductase compare
PFLU_RS29360 -1.5 -1.9 cytochrome c5 family protein compare
PFLU_RS16435 -1.5 -8.1 glycogen debranching protein GlgX compare
PFLU_RS03645 -1.5 -7.9 tetratricopeptide repeat protein compare
PFLU_RS01960 -1.5 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS23920 -1.4 -1.7 septation protein A compare
PFLU_RS10430 -1.4 -2.7 peptidase compare
PFLU_RS04650 -1.4 -9.7 ABC transporter substrate-binding protein compare
PFLU_RS19015 -1.4 -4.9 anti-sigma factor compare
PFLU_RS04430 -1.4 -6.1 ATP-binding cassette domain-containing protein compare
PFLU_RS16410 -1.4 -10.7 glycogen synthase GlgA compare
PFLU_RS01095 -1.4 -3.1 ribbon-helix-helix protein, CopG family compare
PFLU_RS23065 -1.4 -6.5 phosphate acyltransferase PlsX compare
PFLU_RS05880 -1.4 -4.1 CinA family protein compare
PFLU_RS28310 -1.4 -1.8 response regulator compare
PFLU_RS12975 -1.4 -4.3 DUF934 domain-containing protein compare
PFLU_RS29480 -1.4 -7.0 exodeoxyribonuclease III compare
PFLU_RS08160 -1.4 -5.6 sugar transferase compare
PFLU_RS24095 -1.3 -2.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS31530 -1.3 -1.2 transposase compare
PFLU_RS17545 -1.3 -1.9 DUF465 domain-containing protein compare
PFLU_RS24125 -1.3 -4.2 cold-shock protein compare
PFLU_RS10835 -1.3 -2.7 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS21425 -1.3 -3.1 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS30470 -1.2 -1.4 addiction module antidote protein compare
PFLU_RS16425 -1.2 -7.6 malto-oligosyltrehalose synthase compare
PFLU_RS20970 -1.2 -1.7 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS27465 -1.2 -3.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS24085 -1.2 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS17615 -1.2 -1.4 DeoR/GlpR transcriptional regulator compare
PFLU_RS20330 -1.2 -2.4 cold-shock protein compare
PFLU_RS28645 -1.2 -6.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS08185 -1.2 -6.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS16580 -1.1 -2.5 hypothetical protein compare
PFLU_RS05250 -1.1 -3.2 elongation factor 4 compare
PFLU_RS08410 -1.1 -4.1 HTH-type transcriptional regulator CysB compare
PFLU_RS13665 -1.1 -1.1 MarR family transcriptional regulator compare
PFLU_RS22595 -1.1 -2.4 OmpA family protein compare
PFLU_RS03075 -1.1 -1.4 translation initiation factor Sui1 compare
PFLU_RS05885 -1.1 -4.2 recombinase RecA compare
PFLU_RS05690 -1.1 -2.0 Grx4 family monothiol glutaredoxin compare
PFLU_RS08105 -1.1 -4.4 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08650 -1.0 -1.2 heme exporter protein CcmB compare
PFLU_RS31590 -1.0 -1.7 hypothetical protein compare
PFLU_RS04150 -1.0 -3.3 DUF1043 family protein compare
PFLU_RS08165 -1.0 -2.2 acyl carrier protein compare
PFLU_RS31805 -1.0 -2.4 hypothetical protein compare
PFLU_RS30160 -1.0 -1.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25740 -1.0 -3.5 polynucleotide adenylyltransferase PcnB compare
PFLU_RS01660 -1.0 -2.0 rhodanese-like domain-containing protein compare
PFLU_RS31100 -1.0 -2.4 preprotein translocase subunit SecG compare
PFLU_RS02000 -1.0 -8.4 penicillin-binding protein 1A compare
PFLU_RS07665 -1.0 -1.6 type I DNA topoisomerase compare
PFLU_RS21260 -1.0 -3.3 DUF3509 domain-containing protein compare
PFLU_RS18055 -1.0 -1.6 hydrolase compare
PFLU_RS13475 -1.0 -6.3 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS28965 -1.0 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS19915 -1.0 -2.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS25025 -1.0 -2.1 hypothetical protein compare
PFLU_RS04440 -0.9 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS04635 -0.9 -2.9 BON domain-containing protein compare
PFLU_RS19985 -0.9 -3.5 iron chelate uptake ABC transporter family permease subunit compare
PFLU_RS16935 -0.9 -1.9 CoA ester lyase compare
PFLU_RS08670 -0.9 -3.0 heme lyase CcmF/NrfE family subunit compare
PFLU_RS13010 -0.9 -2.8 Fe-S biogenesis protein NfuA compare
PFLU_RS21570 -0.9 -2.7 exonuclease compare
PFLU_RS26735 -0.9 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS25865 -0.9 -1.9 YhbY family RNA-binding protein compare
PFLU_RS29515 -0.9 -4.9 RidA family protein compare
PFLU_RS04385 -0.9 -4.5 RNase adapter RapZ compare
PFLU_RS11415 -0.9 -1.8 protein glxC compare
PFLU_RS00445 -0.9 -1.3 hypothetical protein compare
PFLU_RS31710 -0.9 -2.1 hypothetical protein compare
PFLU_RS28315 -0.9 -1.1 response regulator compare
PFLU_RS27910 -0.8 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS30510 -0.8 -3.3 glycosyltransferase family 4 protein compare
PFLU_RS09980 -0.8 -6.0 peptidase S41 compare
PFLU_RS24790 -0.8 -3.5 tetratricopeptide repeat protein compare
PFLU_RS15005 -0.8 -1.7 hypothetical protein compare
PFLU_RS26165 -0.8 -2.6 hypothetical protein compare
PFLU_RS20405 -0.8 -3.4 carbon storage regulator CsrA compare
PFLU_RS24785 -0.8 -4.7 outer membrane protein assembly factor BamB compare
PFLU_RS21665 -0.8 -3.3 MinD/ParA family protein compare
PFLU_RS11990 -0.8 -1.9 hypothetical protein compare
PFLU_RS31780 -0.8 -1.2 hypothetical protein compare
PFLU_RS23390 -0.8 -1.8 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS26490 -0.8 -2.2 cation diffusion facilitator family transporter compare
PFLU_RS11870 -0.8 -2.0 type II secretion system protein GspG compare
PFLU_RS30530 -0.8 -3.6 acetyltransferase compare
PFLU_RS06570 -0.8 -1.6 glycine zipper 2TM domain-containing protein compare
PFLU_RS06815 -0.8 -4.6 TetR family transcriptional regulator compare
PFLU_RS05105 -0.8 -2.5 tetratricopeptide repeat protein compare
PFLU_RS13295 -0.8 -3.1 HAMP domain-containing protein compare
PFLU_RS18700 -0.7 -1.0 hypothetical protein compare
PFLU_RS30660 -0.7 -1.3 histidine phosphatase family protein compare
PFLU_RS25210 -0.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS24330 -0.7 -3.5 phosphogluconate dehydratase compare
PFLU_RS02490 -0.7 -4.5 phosphoserine phosphatase SerB compare
PFLU_RS21600 -0.7 -1.9 response regulator transcription factor compare
PFLU_RS28250 -0.7 -0.9 malonate decarboxylase holo-ACP synthase compare
PFLU_RS31690 -0.7 -2.1 hypothetical protein compare
PFLU_RS23820 -0.7 -4.6 peptidase compare
PFLU_RS09730 -0.7 -1.7 TIGR03761 family integrating conjugative element protein compare
PFLU_RS08545 -0.7 -2.5 GAF domain-containing protein compare
PFLU_RS13365 -0.7 -1.1 hypothetical protein compare
PFLU_RS25790 -0.7 -2.3 polyribonucleotide nucleotidyltransferase compare
PFLU_RS09600 -0.7 -2.8 LysR family transcriptional regulator compare
PFLU_RS08505 -0.7 -3.0 protease HtpX compare
PFLU_RS00210 -0.7 -1.2 OsmC family protein compare
PFLU_RS29095 -0.7 -6.0 polyphosphate kinase 1 compare
PFLU_RS24670 -0.7 -1.0 HigA family addiction module antidote protein compare
PFLU_RS25360 -0.7 -2.7 glutamate 5-kinase compare
PFLU_RS21925 -0.7 -2.4 YecA family protein compare
PFLU_RS20290 -0.7 -1.2 integration host factor subunit alpha compare
PFLU_RS04015 -0.7 -0.7 1-phosphofructokinase compare
PFLU_RS25205 -0.7 -2.2 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS26920 -0.7 -2.0 thioredoxin compare
PFLU_RS31180 -0.7 -2.8 YqaE/Pmp3 family membrane protein compare
PFLU_RS11475 -0.6 -0.8 histidine kinase compare
PFLU_RS11525 -0.6 -1.8 GntR family transcriptional regulator compare
PFLU_RS12005 -0.6 -2.2 helix-turn-helix domain-containing protein compare
PFLU_RS10405 -0.6 -1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS02355 -0.6 -2.0 GNAT family N-acetyltransferase compare
PFLU_RS19720 -0.6 -1.6 hypothetical protein compare
PFLU_RS22070 -0.6 -2.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS24145 -0.6 -2.5 mechanosensitive ion channel compare
PFLU_RS26145 -0.6 -1.2 hypothetical protein compare
PFLU_RS11825 -0.6 -2.4 NAD(P)-dependent alcohol dehydrogenase compare
PFLU_RS24375 -0.6 -3.9 c-type cytochrome compare
PFLU_RS12600 -0.6 -3.3 TIM barrel protein compare
PFLU_RS05655 -0.6 -1.3 DeoR/GlpR family transcriptional regulator compare
PFLU_RS08485 -0.6 -1.3 crotonase/enoyl-CoA hydratase family protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms