Experiment set11IT088 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with TAPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS19910 +1.0 2.3 hypothetical protein compare
PFLU_RS31290 +1.0 2.1 EamA family transporter compare
PFLU_RS17950 +1.0 1.9 hypothetical protein compare
PFLU_RS13120 +0.9 2.2 hypothetical protein compare
PFLU_RS16310 +0.9 2.3 hypothetical protein compare
PFLU_RS03555 +0.9 1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS03995 +0.9 1.5 hypothetical protein compare
PFLU_RS13350 +0.8 1.6 ParD-like family protein compare
PFLU_RS02180 +0.8 1.6 thioredoxin TrxC compare
PFLU_RS31010 +0.8 2.3 transposase compare
PFLU_RS15910 +0.8 1.8 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS26145 +0.8 2.3 hypothetical protein compare
PFLU_RS22365 +0.7 3.6 membrane protein compare
PFLU_RS00530 +0.7 1.7 DUF2388 domain-containing protein compare
PFLU_RS09500 +0.7 1.8 hypothetical protein compare
PFLU_RS31800 +0.7 2.3 hypothetical protein compare
PFLU_RS19050 +0.7 1.8 spore coat protein U domain-containing protein compare
PFLU_RS18515 +0.7 1.4 fluoride efflux transporter CrcB compare
PFLU_RS08600 +0.7 3.1 glutaredoxin family protein compare
PFLU_RS23220 +0.7 1.9 tRNA-Arg compare
PFLU_RS23595 +0.7 5.7 LacI family DNA-binding transcriptional regulator compare
PFLU_RS06205 +0.7 2.4 cold-shock protein compare
PFLU_RS04530 +0.7 0.9 hypothetical protein compare
PFLU_RS21900 +0.7 2.3 hypothetical protein compare
PFLU_RS24670 +0.7 2.0 HigA family addiction module antidote protein compare
PFLU_RS02980 +0.7 1.2 precorrin-8X methylmutase compare
PFLU_RS03075 +0.6 1.6 translation initiation factor Sui1 compare
PFLU_RS31490 +0.6 1.3 hypothetical protein compare
PFLU_RS31620 +0.6 2.7 integrase compare
PFLU_RS15785 +0.6 1.7 type II secretion system protein GspH compare
PFLU_RS26930 +0.6 1.9 DUF2796 domain-containing protein compare
PFLU_RS30725 +0.6 2.4 DUF1652 domain-containing protein compare
PFLU_RS27910 +0.6 1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS11505 +0.6 1.1 ABC transporter substrate-binding protein compare
PFLU_RS18450 +0.6 2.4 DNA-3-methyladenine glycosylase I compare
PFLU_RS04005 +0.6 4.4 catabolite repressor/activator compare
PFLU_RS21215 +0.6 1.0 YheU family protein compare
PFLU_RS17525 +0.6 1.9 NUDIX domain-containing protein compare
PFLU_RS22335 +0.6 4.1 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS19820 +0.6 2.9 GNAT family N-acetyltransferase compare
PFLU_RS21525 +0.6 4.1 RNA polymerase factor sigma-70 compare
PFLU_RS03250 +0.5 2.0 heavy-metal-associated domain-containing protein compare
PFLU_RS03145 +0.5 2.6 peptidase A24 compare
PFLU_RS29780 +0.5 2.7 acyl-CoA thioesterase compare
PFLU_RS09625 +0.5 2.2 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS11975 +0.5 1.9 histidine phosphatase family protein compare
PFLU_RS21240 +0.5 0.9 hypothetical protein compare
PFLU_RS04415 +0.5 1.4 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS17750 +0.5 1.9 pirin family protein compare
PFLU_RS30470 +0.5 1.6 addiction module antidote protein compare
PFLU_RS00695 +0.5 1.1 DUF2789 domain-containing protein compare
PFLU_RS11100 +0.5 1.9 integrase compare
PFLU_RS29495 +0.5 1.9 YicC family protein compare
PFLU_RS18725 +0.5 0.4 alpha/beta hydrolase compare
PFLU_RS24930 +0.5 1.9 hypothetical protein compare
PFLU_RS23175 +0.5 2.9 flagellar basal body rod protein FlgC compare
PFLU_RS12435 +0.5 4.6 non-ribosomal peptide synthetase compare
PFLU_RS17880 +0.5 2.3 WcaI family glycosyltransferase compare
PFLU_RS26890 +0.5 2.9 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS22470 +0.5 1.7 hypothetical protein compare
PFLU_RS02095 +0.5 2.3 hypothetical protein compare
PFLU_RS22665 +0.5 1.6 alanyl-tRNA editing protein compare
PFLU_RS13085 +0.5 1.4 DUF1315 family protein compare
PFLU_RS05040 +0.5 2.2 DUF1120 domain-containing protein compare
PFLU_RS15830 +0.5 1.9 His-Xaa-Ser system protein HxsD compare
PFLU_RS31545 +0.5 1.7 LysR family transcriptional regulator compare
PFLU_RS19415 +0.5 3.6 SidA/IucD/PvdA family monooxygenase compare
PFLU_RS21635 +0.5 2.1 flagellar motor protein compare
PFLU_RS16025 +0.4 1.8 flavin-dependent monooxygenase compare
PFLU_RS15310 +0.4 0.9 YgdI/YgdR family lipoprotein compare
PFLU_RS22375 +0.4 3.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS22325 +0.4 3.1 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS23890 +0.4 1.9 pseudouridine synthase compare
PFLU_RS14050 +0.4 0.8 hypothetical protein compare
PFLU_RS26950 +0.4 3.0 outer membrane beta-barrel protein compare
PFLU_RS02925 +0.4 2.4 ABC transporter ATP-binding protein compare
PFLU_RS02690 +0.4 1.0 hypothetical protein compare
PFLU_RS06570 +0.4 1.1 glycine zipper 2TM domain-containing protein compare
PFLU_RS21465 +0.4 2.3 MbtH family protein compare
PFLU_RS14670 +0.4 2.2 GNAT family N-acetyltransferase compare
PFLU_RS14440 +0.4 0.4 hypothetical protein compare
PFLU_RS05210 +0.4 1.3 HU family DNA-binding protein compare
PFLU_RS21515 +0.4 4.1 non-ribosomal peptide synthetase compare
PFLU_RS28735 +0.4 2.2 thiol-disulfide isomerase compare
PFLU_RS13765 +0.4 1.2 hypothetical protein compare
PFLU_RS04200 +0.4 3.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS04835 +0.4 0.7 hypothetical protein compare
PFLU_RS00070 +0.4 0.7 tetratricopeptide repeat protein compare
PFLU_RS21710 +0.4 2.6 flagellar type III secretion system pore protein FliP compare
PFLU_RS03575 +0.4 1.3 hypothetical protein compare
PFLU_RS11560 +0.4 1.2 aldolase compare
PFLU_RS26595 +0.4 1.5 lipoprotein compare
PFLU_RS00345 +0.4 2.0 ABC transporter permease compare
PFLU_RS10340 +0.4 0.5 hypothetical protein compare
PFLU_RS22320 +0.4 3.6 cytochrome-c oxidase, cbb3-type subunit I compare
PFLU_RS20990 +0.4 2.0 zinc-binding dehydrogenase compare
PFLU_RS11830 +0.4 1.0 hypothetical protein compare
PFLU_RS19805 +0.4 1.3 LysR family transcriptional regulator compare
PFLU_RS25190 +0.4 1.0 hypothetical protein compare
PFLU_RS21290 +0.4 1.4 hypothetical protein compare
PFLU_RS10555 +0.4 1.2 PhzF family phenazine biosynthesis protein compare
PFLU_RS28715 +0.4 2.1 DUF523 domain-containing protein compare
PFLU_RS09720 +0.4 0.6 single-stranded DNA-binding protein compare
PFLU_RS12730 +0.4 2.1 hypothetical protein compare
PFLU_RS14560 +0.4 1.4 DNA-binding protein compare
PFLU_RS26165 +0.4 1.5 hypothetical protein compare
PFLU_RS18185 +0.4 1.9 SDR family oxidoreductase compare
PFLU_RS31755 +0.4 0.8 hypothetical protein compare
PFLU_RS13750 +0.4 0.6 hypothetical protein compare
PFLU_RS22600 +0.4 1.4 RNA polymerase sigma factor SigX compare
PFLU_RS21795 +0.4 3.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02130 +0.4 1.4 glycosyl transferase compare
PFLU_RS29490 +0.4 2.4 ribonuclease PH compare
PFLU_RS21705 +0.4 2.3 flagellar biosynthesis protein FliQ compare
PFLU_RS00645 +0.4 1.8 ABC transporter ATP-binding protein compare
PFLU_RS04895 +0.4 2.1 alginate biosynthesis protein AlgE compare
PFLU_RS20955 +0.4 1.0 DUF1028 domain-containing protein compare
PFLU_RS01725 +0.4 2.7 YkgJ family cysteine cluster protein compare
PFLU_RS02860 +0.4 1.0 urease subunit beta compare
PFLU_RS27265 +0.4 0.8 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS21765 +0.4 2.5 flagellar assembly protein FliH compare
PFLU_RS02955 +0.4 1.2 DUF2946 domain-containing protein compare
PFLU_RS20790 +0.4 1.3 heme-binding protein compare
PFLU_RS12755 +0.4 1.7 periplasmic heavy metal sensor compare
PFLU_RS03025 +0.4 1.9 tRNA dihydrouridine synthase DusB compare
PFLU_RS18955 +0.4 2.7 hydroxymethylglutaryl-CoA lyase compare
PFLU_RS01750 +0.4 1.7 hypothetical protein compare
PFLU_RS27690 +0.4 0.8 response regulator compare
PFLU_RS14355 +0.4 1.1 DUF2388 domain-containing protein compare
PFLU_RS18095 +0.4 1.4 GlxA family transcriptional regulator compare
PFLU_RS19750 +0.4 1.6 FAD-binding oxidoreductase compare
PFLU_RS06905 +0.4 2.2 LemA family protein compare
PFLU_RS18705 +0.4 1.2 hypothetical protein compare
PFLU_RS19935 +0.4 1.1 type II secretion system protein GspF compare
PFLU_RS12440 +0.4 3.4 non-ribosomal peptide synthetase compare
PFLU_RS17425 +0.4 1.4 ABC transporter ATP-binding protein compare
PFLU_RS21770 +0.4 2.6 flagellar motor switch protein FliG compare
PFLU_RS12455 +0.4 2.2 N(5)-hydroxyornithine transformylase PvdF compare
PFLU_RS29555 +0.4 2.6 HDOD domain-containing protein compare
PFLU_RS11545 +0.4 1.7 amino acid synthesis family protein compare
PFLU_RS00075 +0.4 2.5 Trk system potassium transporter TrkA compare
PFLU_RS16440 +0.4 1.2 acyl-CoA dehydrogenase compare
PFLU_RS14775 +0.4 0.8 enoyl-CoA hydratase compare
PFLU_RS28480 +0.4 1.7 sulfurtransferase compare
PFLU_RS21640 +0.4 2.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS22370 +0.4 2.6 cadmium-translocating P-type ATPase compare
PFLU_RS07555 +0.4 2.6 LamB/YcsF family protein compare
PFLU_RS23165 +0.4 3.2 flagellar hook protein FlgE compare
PFLU_RS04135 +0.4 2.7 HAMP domain-containing histidine kinase compare
PFLU_RS23195 +0.4 3.0 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS11845 +0.4 1.2 DUF4880 domain-containing protein compare
PFLU_RS21755 +0.4 2.4 flagella biosynthesis chaperone FliJ compare
PFLU_RS25925 +0.4 0.7 RnfH family protein compare
PFLU_RS21675 +0.4 3.1 flagellar biosynthesis protein FlhA compare
PFLU_RS21775 +0.4 2.8 flagellar basal body M-ring protein FliF compare
PFLU_RS04285 +0.4 1.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS00960 +0.4 1.4 sulfate ABC transporter ATP-binding protein compare
PFLU_RS20875 +0.3 2.0 hypothetical protein compare
PFLU_RS30570 +0.3 1.3 IS5/IS1182 family transposase compare
PFLU_RS23205 +0.3 2.6 flagellar protein FlgN compare
PFLU_RS12110 +0.3 2.1 L-iditol 2-dehydrogenase compare
PFLU_RS00310 +0.3 0.7 twin transmembrane helix small protein compare
PFLU_RS24345 +0.3 2.1 DUF4880 domain-containing protein compare
PFLU_RS15600 +0.3 1.4 ketoacyl-ACP synthase III compare
PFLU_RS28020 +0.3 1.5 ATP-dependent RNA helicase DbpA compare
PFLU_RS07320 +0.3 1.1 hypothetical protein compare
PFLU_RS21860 +0.3 1.8 flagellar basal body rod protein FlgF compare
PFLU_RS13930 +0.3 2.3 hypothetical protein compare
PFLU_RS28585 +0.3 2.3 HD domain-containing protein compare
PFLU_RS29360 +0.3 0.6 cytochrome c5 family protein compare
PFLU_RS11950 +0.3 1.9 YbjN domain-containing protein compare
PFLU_RS21855 +0.3 2.4 flagellar basal-body rod protein FlgG compare
PFLU_RS07475 +0.3 2.3 D-2-hydroxyacid dehydrogenase compare
PFLU_RS09175 +0.3 2.0 hypothetical protein compare
PFLU_RS12945 +0.3 0.9 hypothetical protein compare
PFLU_RS17160 +0.3 1.1 hypothetical protein compare
PFLU_RS01330 +0.3 2.4 putative adenosine monophosphate-protein transferase Fic compare
PFLU_RS02150 +0.3 1.2 acyl carrier protein compare
PFLU_RS18560 +0.3 1.5 cold shock domain-containing protein CspD compare
PFLU_RS13870 +0.3 1.6 DUF4411 family protein compare
PFLU_RS17150 +0.3 1.5 hypothetical protein compare
PFLU_RS14570 +0.3 1.9 peroxiredoxin compare
PFLU_RS21805 +0.3 2.6 flagellar export chaperone FliS compare
PFLU_RS18975 +0.3 2.5 gamma-carboxygeranoyl-CoA hydratase compare
PFLU_RS19020 +0.3 2.5 fimbrial major subunit CsuA/B family protein compare
PFLU_RS11390 +0.3 1.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
PFLU_RS22385 +0.3 2.6 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS22380 +0.3 1.6 sulfite exporter TauE/SafE family protein compare
PFLU_RS18420 +0.3 0.6 hypothetical protein compare
PFLU_RS21520 +0.3 1.1 thioesterase compare
PFLU_RS00475 +0.3 1.4 MCE family protein compare
PFLU_RS03790 +0.3 1.6 peptidylprolyl isomerase compare
PFLU_RS19745 +0.3 1.2 acetylornithine deacetylase compare
PFLU_RS09680 +0.3 1.9 TIGR03759 family integrating conjugative element protein compare
PFLU_RS11915 +0.3 1.0 transposase compare
PFLU_RS20900 +0.3 1.4 transposase compare
PFLU_RS29165 +0.3 1.2 TIGR02444 family protein compare
PFLU_RS09535 +0.3 0.5 TIGR03750 family conjugal transfer protein compare
PFLU_RS30170 +0.3 1.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS05145 +0.3 2.4 HPF/RaiA family ribosome-associated protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress Sucrose across organisms