Experiment set11IT087 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Theaflavin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_4340 -4.0 -8.4 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.9 -4.6 septum site-determining protein MinC compare
Psyr_1544 -3.7 -4.4 SirA-like protein compare
Psyr_4740 -3.2 -7.1 thiazole-phosphate synthase compare
Psyr_4683 -3.0 -5.0 dethiobiotin synthase compare
Psyr_0951 -3.0 -4.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4991 -2.9 -3.4 hypothetical protein compare
Psyr_4687 -2.8 -7.1 biotin synthase compare
Psyr_4341 -2.7 -7.6 thiamine-phosphate diphosphorylase compare
Psyr_0917 -2.6 -12.9 ABC-2 compare
Psyr_0849 -2.6 -10.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1404 -2.6 -10.2 Ferritin and Dps compare
Psyr_4684 -2.5 -3.8 biotin synthesis protein BioC compare
Psyr_4686 -2.5 -6.9 8-amino-7-oxononanoate synthase compare
Psyr_4580 -2.4 -3.6 anthranilate phosphoribosyltransferase compare
Psyr_1663 -2.4 -3.9 phosphoribosylanthranilate isomerase compare
Psyr_0918 -2.4 -12.3 ABC transporter compare
Psyr_1408 -2.4 -3.3 Holliday junction endonuclease RuvC compare
Psyr_0202 -2.1 -8.6 transcriptional regulator, LysR family compare
Psyr_2347 -2.1 -2.6 hypothetical protein compare
Psyr_0475 -2.1 -3.1 Protein of unknown function YGGT compare
Psyr_3008 -2.1 -6.4 Undecaprenyl-diphosphatase compare
Psyr_1097 -2.0 -3.6 glycine cleavage system H protein compare
Psyr_4091 -2.0 -3.9 8-oxo-dGTPase compare
Psyr_0574 -1.9 -5.9 protease FtsH subunit HflK compare
Psyr_2406 -1.7 -3.7 Flavin reductase-like protein compare
Psyr_0454 -1.7 -5.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0383 -1.7 -2.2 Twin-arginine translocation protein TatB compare
Psyr_3581 -1.7 -5.7 ribosomal large subunit pseudouridine synthase B compare
Psyr_1556 -1.6 -2.6 hypothetical protein compare
Psyr_1410 -1.6 -3.9 Holliday junction DNA helicase RuvB compare
Psyr_2854 -1.6 -4.8 conserved hypothetical protein compare
Psyr_2573 -1.6 -3.5 transcriptional regulator, DeoR family compare
Psyr_3620 -1.6 -2.3 hypothetical protein compare
Psyr_4362 -1.5 -2.9 Rare lipoprotein A compare
Psyr_2807 -1.5 -2.2 NinB compare
Psyr_0826 -1.5 -6.6 glucose-6-phosphate isomerase compare
Psyr_0268 -1.5 -2.8 DSBA oxidoreductase compare
Psyr_2346 -1.5 -5.1 conserved hypothetical protein compare
Psyr_1930 -1.5 -3.2 hypothetical protein compare
Psyr_4884 -1.5 -4.8 Rhodanese-like protein compare
Psyr_0575 -1.4 -3.0 protease FtsH subunit HflC compare
Psyr_0571 -1.4 -3.5 tRNA isopentenyltransferase compare
Psyr_1419 -1.4 -3.1 preQ(0) biosynthesis protein QueC compare
Psyr_3806 -1.4 -5.1 hypothetical protein compare
Psyr_1588 -1.4 -3.4 Putative exonuclease, RdgC compare
Psyr_1751 -1.4 -4.2 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4627 -1.4 -2.6 dimethyladenosine transferase compare
Psyr_2980 -1.3 -3.0 UDP-glucose pyrophosphorylase compare
Psyr_0565 -1.3 -5.5 Protein of unknown function UPF0126 compare
Psyr_0487 -1.3 -2.5 glutathione synthase compare
Psyr_2462 -1.3 -4.3 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1962 -1.3 -7.6 TonB-dependent siderophore receptor compare
Psyr_2642 -1.3 -4.0 hypothetical protein compare
Psyr_5132 -1.3 -3.1 Glucose-inhibited division protein A subfamily compare
Psyr_4203 -1.3 -1.9 SsrA-binding protein compare
Psyr_0215 -1.3 -7.6 Exodeoxyribonuclease III xth compare
Psyr_2305 -1.2 -4.2 Natural resistance-associated macrophage protein compare
Psyr_0034 -1.2 -0.8 tryptophan synthase, beta chain compare
Psyr_5135 -1.2 -2.1 Protein of unknown function DUF37 compare
Psyr_2664 -1.2 -5.4 hypothetical protein compare
Psyr_3616 -1.2 -6.4 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_1749 -1.2 -5.0 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3476 -1.1 -2.1 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_1555 -1.1 -2.8 Cobyrinic acid a,c-diamide synthase compare
Psyr_2143 -1.1 -2.1 delta1-piperideine 2-carboxylate reductase compare
Psyr_3193 -1.1 -2.0 Transcription factor jumonji, jmjC compare
Psyr_1373 -1.1 -2.4 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0201 -1.1 -6.2 ATP-dependent DNA helicase RecG compare
Psyr_4019 -1.1 -3.4 H-NS family protein MvaT compare
Psyr_4774 -1.1 -1.1 Hypothetical protein compare
Psyr_0255 -1.0 -2.0 glutamate-cysteine ligase compare
Psyr_1935 -1.0 -4.2 Protein of unknown function DUF796 compare
Psyr_1245 -1.0 -4.9 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_1832 -1.0 -2.5 Exonuclease compare
Psyr_1816 -1.0 -2.8 transcriptional regulator, GntR family compare
Psyr_1943 -1.0 -3.0 Sigma-70 region 2 compare
Psyr_1094 -1.0 -3.0 cold-shock DNA-binding protein family compare
Psyr_3854 -1.0 -1.3 OmpA/MotB compare
Psyr_4622 -1.0 -3.7 Nucleotidyl transferase compare
Psyr_0294 -1.0 -3.4 Exopolyphosphatase compare
Psyr_4808 -1.0 -1.7 conserved hypothetical protein compare
Psyr_4822 -0.9 -2.9 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1955 -0.9 -1.8 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3005 -0.9 -1.5 3-oxoadipate enol-lactonase compare
Psyr_5072 -0.9 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0680 -0.9 -2.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_2060 -0.9 -3.3 Sec-independent protein translocase TatD compare
Psyr_0529 -0.9 -3.1 Glycosyl transferase, group 1 compare
Psyr_0259 -0.9 -2.0 Osmolarity sensor protein envZ compare
Psyr_1121 -0.9 -2.0 6-phosphogluconolactonase compare
Psyr_3954 -0.9 -2.9 GTP-binding protein LepA compare
Psyr_3419 -0.9 -3.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4786 -0.9 -1.8 hypothetical protein compare
Psyr_RNA61 -0.9 -2.1 tRNA-Gly compare
Psyr_0184 -0.9 -1.9 Protein of unknown function DUF484 compare
Psyr_1667 -0.9 -3.2 Colicin V production protein compare
Psyr_4581 -0.9 -2.0 anthranilate synthase, component II compare
Psyr_4754 -0.8 -1.9 16S rRNA m(2)G-966 methyltransferase compare
Psyr_5130 -0.8 -5.0 chromosome segregation ATPase compare
Psyr_3174 -0.8 -3.3 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_5133 -0.8 -2.7 tRNA modification GTPase trmE compare
Psyr_2456 -0.8 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_4979 -0.8 -3.8 hypothetical protein compare
Psyr_2848 -0.8 -2.2 hypothetical protein compare
Psyr_1931 -0.8 -3.9 hypothetical protein compare
Psyr_2345 -0.8 -3.1 ea59 protein compare
Psyr_5065 -0.8 -4.6 ATP-dependent DNA helicase UvrD compare
Psyr_2737 -0.8 -1.6 hypothetical protein compare
Psyr_0282 -0.8 -3.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1378 -0.8 -1.5 RecA protein compare
Psyr_4512 -0.8 -4.1 putative phage-related protein compare
Psyr_0378 -0.8 -4.8 Glycosyl transferase, family 2 compare
Psyr_0579 -0.8 -5.9 RNAse R compare
Psyr_0920 -0.8 -6.4 Glycosyl transferase, group 1 compare
Psyr_4882 -0.8 -4.2 protein translocase subunit secB compare
Psyr_0959 -0.8 -3.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_2769 -0.8 -2.3 conserved hypothetical protein compare
Psyr_4115 -0.8 -1.4 phosphoheptose isomerase compare
Psyr_3886 -0.8 -0.9 methionyl-tRNA synthetase compare
Psyr_2880 -0.8 -4.0 conserved hypothetical protein compare
Psyr_3640 -0.8 -1.5 conserved hypothetical protein compare
Psyr_1934 -0.8 -3.1 conserved hypothetical protein compare
Psyr_4806 -0.8 -3.8 hypothetical protein compare
Psyr_0319 -0.8 -3.3 conserved hypothetical protein compare
Psyr_2602 -0.8 -3.6 transcriptional regulator, LuxR family compare
Psyr_1992 -0.7 -1.9 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0033 -0.7 -0.8 tryptophan synthase, alpha chain compare
Psyr_0916 -0.7 -4.8 GDP-mannose 4,6-dehydratase compare
Psyr_1460 -0.7 -2.9 hypothetical protein compare
Psyr_4254 -0.7 -1.4 conserved hypothetical protein compare
Psyr_2320 -0.7 -3.7 YD repeat protein compare
Psyr_3293 -0.7 -1.3 UspA compare
Psyr_0648 -0.7 -3.7 transporter, putative compare
Psyr_1885 -0.7 -1.5 hypothetical protein compare
Psyr_0919 -0.7 -4.9 Chromosome segregation ATPase-like protein compare
Psyr_1748 -0.7 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0900 -0.7 -3.1 TRAP dicarboxylate transporter- DctP subunit compare
Psyr_2770 -0.7 -3.5 tail fiber domain protein compare
Psyr_3661 -0.7 -2.1 Fumarate hydratase, class II compare
Psyr_2855 -0.7 -2.2 methionine synthase (B12-independent) compare
Psyr_0923 -0.7 -2.5 hypothetical protein compare
Psyr_4285 -0.7 -1.8 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_1372 -0.7 -2.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4057 -0.7 -2.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_2518 -0.7 -3.2 conserved hypothetical protein compare
Psyr_1686 -0.7 -2.3 Metallophosphoesterase compare
Psyr_1553 -0.7 -3.3 hypothetical protein compare
Psyr_1903 -0.7 -2.0 conserved hypothetical protein compare
Psyr_3658 -0.7 -4.0 Rhodanese-like protein compare
Psyr_0533 -0.7 -2.9 conserved hypothetical protein compare
Psyr_2612 -0.7 -1.7 syrP protein, putative compare
Psyr_1389 -0.7 -2.4 Protein of unknown function DUF1456 compare
Psyr_2824 -0.7 -2.2 conserved hypothetical protein compare
Psyr_4490 -0.7 -1.3 transcriptional regulator, DeoR family compare
Psyr_3290 -0.7 -2.0 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_3637 -0.7 -5.1 Glycosyl transferase, family 4 compare
Psyr_1459 -0.7 -2.2 DNA polymerase, beta-like region compare
Psyr_3164 -0.7 -3.7 Protein of unknown function UPF0005 compare
Psyr_2833 -0.7 -1.4 CDS compare
Psyr_2826 -0.7 -1.9 hypothetical protein compare
Psyr_4464 -0.7 -1.0 lipoprotein, putative compare
Psyr_4317 -0.7 -3.4 Probable taurine catabolism dioxygenase-like protein compare
Psyr_2837 -0.7 -3.5 hypothetical protein compare
Psyr_3547 -0.6 -2.7 transcriptional regulator, TetR family compare
Psyr_0941 -0.6 -3.3 Conserved hypothetical protein 92 compare
Psyr_1329 -0.6 -1.3 conserved hypothetical protein compare
Psyr_3805 -0.6 -1.7 hypothetical protein compare
Psyr_2798 -0.6 -3.1 hypothetical protein compare
Psyr_3458 -0.6 -1.3 Flagellar hook-basal body complex protein FliE compare
Psyr_0464 -0.6 -1.2 hypothetical protein compare
Psyr_3677 -0.6 -1.9 Aminotransferase, class I and II compare
Psyr_0524 -0.6 -2.0 Lipopolysaccharide kinase compare
Psyr_0493 -0.6 -2.1 CheW-like protein compare
Psyr_1286 -0.6 -3.2 tyrosine recombinase XerD subunit compare
Psyr_2188 -0.6 -1.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 compare
Psyr_4138 -0.6 -1.8 Toluene tolerance compare
Psyr_2214 -0.6 -3.3 PAS compare
Psyr_3199 -0.6 -1.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2321 -0.6 -3.2 YD repeat protein compare
Psyr_3934 -0.6 -1.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_4584 -0.6 -4.3 Protein of unknown function DUF144 compare
Psyr_4887 -0.6 -4.0 Peptidase S41A, C-terminal protease compare
Psyr_2639 -0.6 -3.3 hypothetical protein compare
Psyr_3473 -0.6 -1.3 Flagellar P-ring protein compare
Psyr_3287 -0.6 -1.2 DNA topoisomerase I compare
Psyr_0041 -0.6 -2.1 Protein of unknown function DUF1161 compare
Psyr_4050 -0.6 -1.5 Protein of unknown function DUF479 compare
Psyr_4609 -0.6 -4.2 anthranilate synthase, component I compare
Psyr_2071 -0.6 -0.5 outer membrane lipoprotein OprI compare
Psyr_0864 -0.6 -1.5 Protein of unknown function DUF393 compare
Psyr_1907 -0.6 -1.4 GTP cyclohydrolase I compare
Psyr_4020 -0.6 -4.6 Exodeoxyribonuclease I subunit C compare
Psyr_2182 -0.6 -2.4 hypothetical protein compare
Psyr_3714 -0.6 -3.5 Ferric iron reductase compare
Psyr_0936 -0.6 -4.3 Glycosyl transferase, group 1 compare
Psyr_0212 -0.6 -2.8 Conserved hypothetical protein 255 compare
Psyr_2563 -0.6 -1.7 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2601 -0.6 -3.4 regulatory protein, LuxR compare
Psyr_0185 -0.6 -3.1 tyrosine recombinase XerC subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Theaflavin across organisms