Experiment set11IT086 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Fumarprotocetraric Acid 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.3 -3.0 SirA-like protein compare
Psyr_0951 -4.3 -4.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1613 -3.5 -4.7 septum site-determining protein MinC compare
Psyr_4340 -3.5 -8.9 phosphomethylpyrimidine kinase, putative compare
Psyr_1556 -3.4 -3.9 hypothetical protein compare
Psyr_4683 -3.1 -4.2 dethiobiotin synthase compare
Psyr_4341 -3.0 -8.7 thiamine-phosphate diphosphorylase compare
Psyr_3008 -2.8 -8.3 Undecaprenyl-diphosphatase compare
Psyr_4687 -2.8 -7.0 biotin synthase compare
Psyr_4740 -2.6 -6.0 thiazole-phosphate synthase compare
Psyr_4686 -2.6 -6.4 8-amino-7-oxononanoate synthase compare
Psyr_1121 -2.5 -3.6 6-phosphogluconolactonase compare
Psyr_4580 -2.5 -3.5 anthranilate phosphoribosyltransferase compare
Psyr_1663 -2.4 -3.6 phosphoribosylanthranilate isomerase compare
Psyr_0487 -2.4 -2.8 glutathione synthase compare
Psyr_0454 -2.4 -6.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0826 -2.1 -7.7 glucose-6-phosphate isomerase compare
Psyr_4991 -2.1 -3.4 hypothetical protein compare
Psyr_0849 -2.0 -9.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0475 -2.0 -2.6 Protein of unknown function YGGT compare
Psyr_4203 -1.9 -2.8 SsrA-binding protein compare
Psyr_4091 -1.9 -3.7 8-oxo-dGTPase compare
Psyr_2285 -1.9 -2.9 Twin-arginine translocation pathway signal compare
Psyr_3013 -1.7 -2.7 magnesium chelatase subunit ChlD compare
Psyr_3954 -1.7 -5.8 GTP-binding protein LepA compare
Psyr_4684 -1.7 -3.1 biotin synthesis protein BioC compare
Psyr_1907 -1.6 -3.6 GTP cyclohydrolase I compare
Psyr_0918 -1.5 -9.4 ABC transporter compare
Psyr_2980 -1.5 -3.3 UDP-glucose pyrophosphorylase compare
Psyr_1419 -1.4 -3.0 preQ(0) biosynthesis protein QueC compare
Psyr_4519 -1.4 -5.3 General substrate transporter:Major facilitator superfamily compare
Psyr_3419 -1.4 -4.2 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0917 -1.4 -7.8 ABC-2 compare
Psyr_0574 -1.4 -4.7 protease FtsH subunit HflK compare
Psyr_4460 -1.4 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0575 -1.3 -3.1 protease FtsH subunit HflC compare
Psyr_0383 -1.3 -1.7 Twin-arginine translocation protein TatB compare
Psyr_1588 -1.3 -3.2 Putative exonuclease, RdgC compare
Psyr_4581 -1.3 -2.9 anthranilate synthase, component II compare
Psyr_0255 -1.3 -2.3 glutamate-cysteine ligase compare
Psyr_1245 -1.3 -4.3 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_5132 -1.2 -3.0 Glucose-inhibited division protein A subfamily compare
Psyr_2642 -1.2 -3.5 hypothetical protein compare
Psyr_1555 -1.2 -3.2 Cobyrinic acid a,c-diamide synthase compare
Psyr_1378 -1.2 -1.8 RecA protein compare
Psyr_2641 -1.2 -2.8 hypothetical protein compare
Psyr_2071 -1.2 -2.0 outer membrane lipoprotein OprI compare
Psyr_0831 -1.2 -2.0 Two-component response regulator CbrB compare
Psyr_1418 -1.2 -2.3 Radical SAM compare
Psyr_4362 -1.2 -2.4 Rare lipoprotein A compare
Psyr_4884 -1.1 -4.6 Rhodanese-like protein compare
Psyr_3324 -1.1 -2.8 transcriptional regulator, TetR family compare
Psyr_1791 -1.1 -2.5 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_4424 -1.1 -5.2 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0565 -1.1 -5.0 Protein of unknown function UPF0126 compare
Psyr_1748 -1.1 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2769 -1.1 -2.9 conserved hypothetical protein compare
Psyr_2540 -1.0 -2.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0034 -1.0 -1.0 tryptophan synthase, beta chain compare
Psyr_4350 -1.0 -2.1 Protein of unknown function DUF218 compare
Psyr_4089 -1.0 -4.1 PAS compare
Psyr_0070 -1.0 -1.9 hypothetical protein compare
Psyr_2588 -1.0 -2.2 HpcH/HpaI aldolase compare
Psyr_2462 -1.0 -3.2 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1314 -1.0 -3.6 lipoprotein, putative compare
Psyr_1751 -1.0 -3.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3554 -1.0 -1.1 Carbon storage regulator compare
Psyr_1910 -1.0 -3.1 VacJ-like lipoprotein compare
Psyr_5133 -1.0 -2.9 tRNA modification GTPase trmE compare
Psyr_2990 -1.0 -2.8 conserved hypothetical protein compare
Psyr_4015 -1.0 -2.0 conserved domain protein compare
Psyr_3677 -1.0 -2.7 Aminotransferase, class I and II compare
Psyr_3644 -1.0 -2.9 prephenate dehydrogenase compare
Psyr_4609 -0.9 -7.0 anthranilate synthase, component I compare
Psyr_3947 -0.9 -2.2 Methyltransferase, putative compare
Psyr_0838 -0.9 -2.4 Rieske [2Fe-2S] region compare
Psyr_0680 -0.9 -2.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_4593 -0.9 -2.8 sigma factor domain protein compare
Psyr_0549 -0.9 -1.9 Metallophosphoesterase compare
Psyr_2752 -0.9 -1.8 conserved hypothetical protein compare
Psyr_3702 -0.9 -2.0 Arsenate reductase compare
Psyr_3854 -0.9 -1.4 OmpA/MotB compare
Psyr_2840 -0.9 -2.6 hypothetical protein compare
Psyr_4822 -0.9 -2.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0294 -0.9 -3.4 Exopolyphosphatase compare
Psyr_2612 -0.9 -1.8 syrP protein, putative compare
Psyr_4622 -0.8 -3.0 Nucleotidyl transferase compare
Psyr_3638 -0.8 -2.9 UDP-glucose 4-epimerase, putative compare
Psyr_3806 -0.8 -3.5 hypothetical protein compare
Psyr_4139 -0.8 -3.4 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_4754 -0.8 -1.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4051 -0.8 -2.0 transcriptional regulator, ArsR family compare
Psyr_3357 -0.8 -1.4 transcriptional regulator, LysR family compare
Psyr_1275 -0.8 -2.4 Protein of unknown function DUF1289 compare
Psyr_4278 -0.8 -1.8 regulatory protein, LuxR compare
Psyr_RNA61 -0.8 -2.4 tRNA-Gly compare
Psyr_2617 -0.8 -1.6 Secretion protein HlyD compare
Psyr_4512 -0.8 -3.3 putative phage-related protein compare
Psyr_1350 -0.7 -2.2 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1277 -0.7 -1.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_0817 -0.7 -3.1 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_0184 -0.7 -2.5 Protein of unknown function DUF484 compare
Psyr_1097 -0.7 -1.5 glycine cleavage system H protein compare
Psyr_0724 -0.7 -1.5 conserved hypothetical protein compare
Psyr_3199 -0.7 -1.9 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4480 -0.7 -1.6 outer membrane transport energization protein TonB compare
Psyr_2854 -0.7 -2.6 conserved hypothetical protein compare
Psyr_0919 -0.7 -5.0 Chromosome segregation ATPase-like protein compare
Psyr_1410 -0.7 -2.3 Holliday junction DNA helicase RuvB compare
Psyr_1930 -0.7 -1.7 hypothetical protein compare
Psyr_4562 -0.7 -2.7 conserved domain protein compare
Psyr_1749 -0.7 -3.7 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4254 -0.7 -1.8 conserved hypothetical protein compare
Psyr_3610 -0.7 -2.1 GAF compare
Psyr_0215 -0.7 -5.1 Exodeoxyribonuclease III xth compare
Psyr_1645 -0.7 -2.2 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_3867 -0.7 -1.5 hypothetical protein compare
Psyr_2095 -0.7 -3.0 Conserved TM helix compare
Psyr_1400 -0.7 -5.6 outer membrane porin compare
Psyr_1408 -0.7 -1.6 Holliday junction endonuclease RuvC compare
Psyr_4476 -0.7 -2.8 dTDP-4-dehydrorhamnose reductase compare
Psyr_3581 -0.7 -2.9 ribosomal large subunit pseudouridine synthase B compare
Psyr_1379 -0.7 -1.8 Regulatory protein RecX compare
Psyr_4830 -0.7 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4417 -0.7 -1.4 Ferredoxin--nitrite reductase compare
Psyr_2305 -0.7 -2.6 Natural resistance-associated macrophage protein compare
Psyr_2221 -0.7 -1.3 sarcosine oxidase, gamma subunit compare
Psyr_2471 -0.7 -1.1 hydroxymethylglutaryl-CoA lyase compare
Psyr_2847 -0.7 -1.7 hypothetical protein compare
Psyr_0493 -0.7 -1.7 CheW-like protein compare
Psyr_3934 -0.7 -1.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_4408 -0.7 -3.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2894 -0.7 -1.4 conserved hypothetical protein compare
Psyr_3133 -0.7 -1.3 Amidohydrolase 2 compare
Psyr_2535 -0.7 -2.4 GGDEF domain protein compare
Psyr_3618 -0.7 -2.2 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_1222 -0.7 -0.9 CDS compare
Psyr_0571 -0.7 -1.9 tRNA isopentenyltransferase compare
Psyr_3152 -0.7 -0.8 hypothetical protein compare
Psyr_1250 -0.7 -1.5 conserved hypothetical protein compare
Psyr_1747 -0.6 -2.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1972 -0.6 -2.0 conserved hypothetical protein compare
Psyr_2092 -0.6 -1.8 Protein of unknown function 1935 compare
Psyr_2134 -0.6 -1.4 protein of unknown function DUF903 compare
Psyr_1935 -0.6 -2.3 Protein of unknown function DUF796 compare
Psyr_1975 -0.6 -1.5 Integrase, catalytic region compare
Psyr_0014 -0.6 -2.1 lipid A biosynthesis acyltransferase compare
Psyr_1017 -0.6 -1.6 type III effector HopJ1 compare
Psyr_2383 -0.6 -1.4 Protein of unknown function DUF72 compare
Psyr_3034 -0.6 -1.9 conserved hypothetical protein compare
Psyr_1067 -0.6 -1.2 GTP cyclohydrolase subunit MoaC compare
Psyr_1530 -0.6 -1.3 hypothetical protein compare
Psyr_4141 -0.6 -2.2 ABC transporter compare
Psyr_1614 -0.6 -1.7 lipid A biosynthesis acyltransferase compare
Psyr_2128 -0.6 -1.9 Protein of unknown function DUF6 compare
Psyr_0845 -0.6 -1.5 conserved hypothetical protein compare
Psyr_2797 -0.6 -3.0 hypothetical protein compare
Psyr_2351 -0.6 -2.1 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_3287 -0.6 -1.2 DNA topoisomerase I compare
Psyr_3665 -0.6 -2.0 conserved hypothetical protein compare
Psyr_3213 -0.6 -1.7 Propeptide, PepSY amd peptidase M4 compare
Psyr_1458 -0.6 -1.6 hypothetical protein compare
Psyr_2582 -0.6 -4.1 TonB-dependent siderophore receptor compare
Psyr_2141 -0.6 -1.2 hypothetical protein compare
Psyr_2807 -0.6 -1.1 NinB compare
Psyr_1992 -0.6 -1.6 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2664 -0.6 -3.2 hypothetical protein compare
Psyr_2639 -0.6 -2.9 hypothetical protein compare
Psyr_0916 -0.6 -4.2 GDP-mannose 4,6-dehydratase compare
Psyr_0734 -0.6 -2.1 Protein of unknown function DUF159 compare
Psyr_4138 -0.6 -1.5 Toluene tolerance compare
Psyr_3849 -0.6 -3.0 L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein compare
Psyr_3208 -0.6 -1.3 NADH dehydrogenase subunit M compare
Psyr_0394 -0.6 -2.6 Heat shock protein HslU compare
Psyr_2973 -0.6 -1.4 Glyoxalase I compare
Psyr_1371 -0.6 -3.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0579 -0.6 -4.1 RNAse R compare
Psyr_1140 -0.6 -1.7 Disulfide bond formation protein DsbB compare
Psyr_2786 -0.6 -1.8 phage-related conserved hypothetical protein compare
Psyr_2346 -0.6 -2.1 conserved hypothetical protein compare
Psyr_0276 -0.6 -1.9 zinc uptake regulation protein, putative compare
Psyr_3933 -0.6 -0.8 conserved hypothetical protein compare
Psyr_4367 -0.6 -2.2 Iojap-related protein compare
Psyr_2848 -0.6 -2.2 hypothetical protein compare
Psyr_0940 -0.6 -3.5 CDS compare
Psyr_0282 -0.6 -2.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2251 -0.6 -1.2 Phosphonate metabolism PhnG compare
Psyr_2551 -0.6 -2.3 acetylornithine aminotransferase apoenzyme compare
Psyr_2591 -0.6 -2.5 transport system permease protein compare
Psyr_2244 -0.6 -0.9 DNA topoisomerase III compare
Psyr_1667 -0.6 -2.5 Colicin V production protein compare
Psyr_4584 -0.6 -3.5 Protein of unknown function DUF144 compare
Psyr_0060 -0.6 -1.9 Protein of unknown function DUF513 compare
Psyr_0529 -0.5 -2.3 Glycosyl transferase, group 1 compare
Psyr_0464 -0.5 -1.2 hypothetical protein compare
Psyr_0947 -0.5 -2.9 TPR repeat protein:TPR repeat protein compare
Psyr_1944 -0.5 -1.7 Thioesterase compare
Psyr_2137 -0.5 -1.4 molybdopterin molybdochelatase compare
Psyr_2345 -0.5 -1.6 ea59 protein compare
Psyr_2879 -0.5 -1.0 VirK compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Fumarprotocetraric Acid across organisms