Experiment set11IT085 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Matrine 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -3.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1613 -3.9 -4.6 septum site-determining protein MinC compare
Psyr_1544 -3.7 -5.0 SirA-like protein compare
Psyr_4991 -3.4 -3.2 hypothetical protein compare
Psyr_4340 -3.4 -9.1 phosphomethylpyrimidine kinase, putative compare
Psyr_3008 -3.3 -9.1 Undecaprenyl-diphosphatase compare
Psyr_4740 -3.1 -6.5 thiazole-phosphate synthase compare
Psyr_4203 -3.1 -2.9 SsrA-binding protein compare
Psyr_4686 -2.8 -6.4 8-amino-7-oxononanoate synthase compare
Psyr_5132 -2.6 -4.2 Glucose-inhibited division protein A subfamily compare
Psyr_0849 -2.5 -10.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2285 -2.5 -3.1 Twin-arginine translocation pathway signal compare
Psyr_4341 -2.3 -6.7 thiamine-phosphate diphosphorylase compare
Psyr_4580 -2.2 -2.9 anthranilate phosphoribosyltransferase compare
Psyr_4687 -2.2 -7.6 biotin synthase compare
Psyr_1663 -2.2 -3.5 phosphoribosylanthranilate isomerase compare
Psyr_4091 -2.1 -4.8 8-oxo-dGTPase compare
Psyr_4822 -2.1 -4.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0918 -2.1 -12.2 ABC transporter compare
Psyr_4683 -2.1 -4.6 dethiobiotin synthase compare
Psyr_0454 -2.1 -5.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0917 -2.0 -9.1 ABC-2 compare
Psyr_4627 -1.9 -2.8 dimethyladenosine transferase compare
Psyr_1418 -1.9 -3.8 Radical SAM compare
Psyr_1930 -1.9 -4.3 hypothetical protein compare
Psyr_0574 -1.8 -5.3 protease FtsH subunit HflK compare
Psyr_3419 -1.7 -4.9 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3886 -1.6 -2.3 methionyl-tRNA synthetase compare
Psyr_1907 -1.6 -3.4 GTP cyclohydrolase I compare
Psyr_4682 -1.6 -2.6 conserved hypothetical protein compare
Psyr_4884 -1.6 -5.4 Rhodanese-like protein compare
Psyr_3954 -1.6 -5.7 GTP-binding protein LepA compare
Psyr_1556 -1.6 -2.6 hypothetical protein compare
Psyr_1802 -1.5 -2.3 transcriptional regulator, AsnC family compare
Psyr_4684 -1.5 -3.1 biotin synthesis protein BioC compare
Psyr_0464 -1.5 -2.9 hypothetical protein compare
Psyr_2887 -1.5 -2.5 Endoribonuclease L-PSP compare
Psyr_0575 -1.4 -3.5 protease FtsH subunit HflC compare
Psyr_4581 -1.4 -2.3 anthranilate synthase, component II compare
Psyr_1404 -1.4 -7.4 Ferritin and Dps compare
Psyr_1408 -1.4 -2.5 Holliday junction endonuclease RuvC compare
Psyr_0383 -1.4 -1.8 Twin-arginine translocation protein TatB compare
Psyr_2190 -1.4 -2.3 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1419 -1.3 -2.9 preQ(0) biosynthesis protein QueC compare
Psyr_0475 -1.3 -2.3 Protein of unknown function YGGT compare
Psyr_3808 -1.3 -1.3 hypothetical protein compare
Psyr_1212 -1.3 -2.4 type III secretion protein HrpO compare
Psyr_0565 -1.2 -5.3 Protein of unknown function UPF0126 compare
Psyr_1555 -1.2 -3.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_4089 -1.2 -4.6 PAS compare
Psyr_1748 -1.2 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2184 -1.2 -2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_3208 -1.2 -1.6 NADH dehydrogenase subunit M compare
Psyr_2642 -1.2 -4.1 hypothetical protein compare
Psyr_0034 -1.1 -0.8 tryptophan synthase, beta chain compare
Psyr_4361 -1.1 -2.6 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_4151 -1.1 -1.4 Phosphocarrier HPr protein compare
Psyr_1460 -1.1 -3.4 hypothetical protein compare
Psyr_3179 -1.1 -2.2 DNA translocase FtsK compare
Psyr_4634 -1.1 -1.2 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2641 -1.1 -1.8 hypothetical protein compare
Psyr_5133 -1.1 -3.2 tRNA modification GTPase trmE compare
Psyr_RNA61 -1.1 -2.8 tRNA-Gly compare
Psyr_1094 -1.1 -3.1 cold-shock DNA-binding protein family compare
Psyr_3127 -1.1 -3.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2980 -1.1 -2.7 UDP-glucose pyrophosphorylase compare
Psyr_2171 -1.1 -1.3 HpcH/HpaI aldolase compare
Psyr_2973 -1.0 -1.7 Glyoxalase I compare
Psyr_1935 -1.0 -3.4 Protein of unknown function DUF796 compare
Psyr_0826 -1.0 -5.0 glucose-6-phosphate isomerase compare
Psyr_1688 -1.0 -2.4 Protein of unknown function DUF1315 compare
Psyr_1350 -1.0 -3.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_5135 -1.0 -1.5 Protein of unknown function DUF37 compare
Psyr_2921 -1.0 -2.6 ADP-ribosylglycohydrolase compare
Psyr_2990 -1.0 -2.9 conserved hypothetical protein compare
Psyr_2406 -1.0 -2.2 Flavin reductase-like protein compare
Psyr_0487 -1.0 -2.0 glutathione synthase compare
Psyr_3581 -1.0 -4.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_0215 -1.0 -6.2 Exodeoxyribonuclease III xth compare
Psyr_4512 -1.0 -4.9 putative phage-related protein compare
Psyr_1667 -1.0 -3.2 Colicin V production protein compare
Psyr_0153 -1.0 -2.6 conserved hypothetical protein compare
Psyr_1832 -1.0 -1.9 Exonuclease compare
Psyr_3284 -0.9 -2.7 SOS cell division inhibitor SulA compare
Psyr_1250 -0.9 -2.5 conserved hypothetical protein compare
Psyr_3805 -0.9 -2.3 hypothetical protein compare
Psyr_4285 -0.9 -2.2 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_0347 -0.9 -3.0 hypothetical protein compare
Psyr_0255 -0.9 -1.9 glutamate-cysteine ligase compare
Psyr_0919 -0.9 -6.4 Chromosome segregation ATPase-like protein compare
Psyr_3450 -0.9 -3.1 Hpt compare
Psyr_2854 -0.9 -2.4 conserved hypothetical protein compare
Psyr_1824 -0.9 -3.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3213 -0.9 -2.5 Propeptide, PepSY amd peptidase M4 compare
Psyr_2151 -0.9 -1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3028 -0.9 -1.5 Protein of unknown function DUF28 compare
Psyr_0270 -0.9 -3.1 DNA polymerase I compare
Psyr_1975 -0.9 -1.7 Integrase, catalytic region compare
Psyr_3199 -0.8 -2.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2536 -0.8 -2.4 transcriptional regulator, LysR family compare
Psyr_0281 -0.8 -2.2 ABC transporter compare
Psyr_4380 -0.8 -2.3 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_2471 -0.8 -1.2 hydroxymethylglutaryl-CoA lyase compare
Psyr_2664 -0.8 -4.2 hypothetical protein compare
Psyr_0033 -0.8 -0.6 tryptophan synthase, alpha chain compare
Psyr_2262 -0.8 -2.0 Peptidase M20:Peptidase M20 compare
Psyr_3034 -0.8 -1.8 conserved hypothetical protein compare
Psyr_3807 -0.8 -4.0 hypothetical protein compare
Psyr_2770 -0.8 -2.9 tail fiber domain protein compare
Psyr_3620 -0.8 -1.1 hypothetical protein compare
Psyr_4754 -0.8 -1.3 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1749 -0.8 -3.8 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4786 -0.8 -1.2 hypothetical protein compare
Psyr_1984 -0.8 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psyr_2039 -0.8 -1.6 Fimbrial protein compare
Psyr_2607 -0.8 -3.8 regulatory protein, LuxR compare
Psyr_1751 -0.8 -2.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1198 -0.8 -1.8 type III secretion protein HrpF compare
Psyr_3013 -0.8 -1.6 magnesium chelatase subunit ChlD compare
Psyr_3104 -0.8 -2.0 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_3806 -0.8 -2.1 hypothetical protein compare
Psyr_2312 -0.8 -1.2 Protein of unknown function DUF24 compare
Psyr_4860 -0.8 -1.1 Integrase, catalytic region compare
Psyr_1373 -0.8 -1.8 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3287 -0.8 -1.5 DNA topoisomerase I compare
Psyr_0259 -0.7 -1.8 Osmolarity sensor protein envZ compare
Psyr_3723 -0.7 -1.8 CDS compare
Psyr_0920 -0.7 -6.3 Glycosyl transferase, group 1 compare
Psyr_4804 -0.7 -2.1 conserved hypothetical protein compare
Psyr_2143 -0.7 -1.1 delta1-piperideine 2-carboxylate reductase compare
Psyr_0282 -0.7 -3.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4112 -0.7 -4.6 Protein of unknown function UPF0011 compare
Psyr_2738 -0.7 -2.9 regulatory protein, LysR compare
Psyr_4609 -0.7 -5.2 anthranilate synthase, component I compare
Psyr_1864 -0.7 -2.0 spermidine synthase compare
Psyr_3193 -0.7 -1.5 Transcription factor jumonji, jmjC compare
Psyr_4752 -0.7 -3.0 Insulinase-like:Peptidase M16, C-terminal compare
Psyr_0916 -0.7 -4.7 GDP-mannose 4,6-dehydratase compare
Psyr_1225 -0.7 -2.8 hypothetical protein compare
Psyr_1615 -0.7 -2.6 Patatin compare
Psyr_3282 -0.7 -2.7 transcriptional regulator, TetR family compare
Psyr_3900 -0.7 -1.5 conserved hypothetical protein compare
Psyr_4278 -0.7 -1.5 regulatory protein, LuxR compare
Psyr_1417 -0.7 -2.6 TPR repeat protein compare
Psyr_3164 -0.7 -4.0 Protein of unknown function UPF0005 compare
Psyr_0492 -0.7 -4.9 Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt compare
Psyr_3674 -0.7 -1.5 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_2030 -0.7 -1.0 Calcium-binding EF-hand compare
Psyr_1227 -0.7 -1.8 Queuosine biosynthesis protein compare
Psyr_0638 -0.7 -2.4 Peptidase S16, lon N-terminal compare
Psyr_1097 -0.7 -1.7 glycine cleavage system H protein compare
Psyr_1247 -0.7 -1.2 conserved hypothetical protein compare
Psyr_4093 -0.7 -2.7 glutamate N-acetyltransferase compare
Psyr_4254 -0.7 -1.3 conserved hypothetical protein compare
Psyr_4118 -0.7 -3.4 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_3636 -0.7 -4.5 Polysaccharide biosynthesis protein CapD compare
Psyr_4622 -0.7 -2.3 Nucleotidyl transferase compare
Psyr_0579 -0.7 -4.6 RNAse R compare
Psyr_2898 -0.7 -3.1 Helix-turn-helix motif protein compare
Psyr_0528 -0.6 -1.5 Carbamoyltransferase compare
Psyr_4566 -0.6 -4.2 Peptidase M23B compare
Psyr_1924 -0.6 -1.8 hypothetical protein compare
Psyr_2842 -0.6 -3.4 hypothetical protein compare
Psyr_3952 -0.6 -2.1 conserved hypothetical protein compare
Psyr_4893 -0.6 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1931 -0.6 -2.6 hypothetical protein compare
Psyr_0550 -0.6 -2.6 Protein of unknown function UPF0227 compare
Psyr_1903 -0.6 -1.6 conserved hypothetical protein compare
Psyr_3673 -0.6 -1.1 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1190 -0.6 -2.4 type III transcriptional regulator HrpR compare
Psyr_0541 -0.6 -1.6 Small multidrug resistance protein compare
Psyr_2769 -0.6 -2.1 conserved hypothetical protein compare
Psyr_3854 -0.6 -1.0 OmpA/MotB compare
Psyr_0927 -0.6 -1.7 hypothetical protein compare
Psyr_5130 -0.6 -3.5 chromosome segregation ATPase compare
Psyr_2346 -0.6 -2.1 conserved hypothetical protein compare
Psyr_0060 -0.6 -2.9 Protein of unknown function DUF513 compare
Psyr_1934 -0.6 -2.6 conserved hypothetical protein compare
Psyr_3547 -0.6 -1.7 transcriptional regulator, TetR family compare
Psyr_4736 -0.6 -1.9 conserved hypothetical protein compare
Psyr_3152 -0.6 -0.6 hypothetical protein compare
Psyr_0184 -0.6 -1.6 Protein of unknown function DUF484 compare
Psyr_0174 -0.6 -2.9 Sodium:dicarboxylate symporter compare
Psyr_2848 -0.6 -2.1 hypothetical protein compare
Psyr_2321 -0.6 -3.0 YD repeat protein compare
Psyr_2532 -0.6 -2.4 transcriptional regulator, LysR family compare
Psyr_3084 -0.6 -1.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2088 -0.6 -1.1 2-methylaconitate cis-trans isomerase compare
Psyr_2351 -0.6 -2.2 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_2847 -0.6 -1.4 hypothetical protein compare
Psyr_0529 -0.6 -2.2 Glycosyl transferase, group 1 compare
Psyr_1271 -0.6 -2.7 ErfK/YbiS/YcfS/YnhG compare
Psyr_0319 -0.6 -2.8 conserved hypothetical protein compare
Psyr_0941 -0.6 -3.1 Conserved hypothetical protein 92 compare
Psyr_3840 -0.6 -1.8 conserved hypothetical protein compare
Psyr_4115 -0.6 -1.1 phosphoheptose isomerase compare
Psyr_4309 -0.6 -2.6 hypothetical protein compare
Psyr_2327 -0.6 -1.6 GTP cyclohydrolase subunit MoaA compare
Psyr_1992 -0.6 -1.7 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_3728 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Matrine across organisms