Experiment set11IT081 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

palatinose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
BT3757 -4.8 -5.7 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT2157 -4.8 -3.3 3-keto-alpha-glucoside 1,2-lyase; 3-ketoglucose dehydratase (from data) compare
BT0892 -4.7 -3.0 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3733 -4.4 -5.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3164 -4.3 -11.9 quinolinate synthetase A (NCBI ptt file) compare
BT1857 -4.3 -5.2 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3395 -4.3 -6.6 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT2402 -4.3 -9.2 phosphoglycerate mutase (NCBI ptt file) compare
BT0891 -4.2 -2.9 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT3759 -4.2 -5.8 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT3933 -4.2 -6.4 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1377 -4.1 -2.9 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3549 -4.1 -2.8 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3760 -4.1 -4.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT2415 -4.1 -9.8 aspartate aminotransferase (NCBI ptt file) compare
BT2401 -4.0 -6.7 threonine synthase (NCBI ptt file) compare
BT2074 -4.0 -7.7 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3936 -4.0 -2.7 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1843 -3.9 -5.4 adenylosuccinate synthetase (NCBI ptt file) compare
BT3761 -3.9 -2.7 N-succinylglutamate synthase (from data) compare
BT1153 -3.9 -3.8 phosphoserine aminotransferase (NCBI ptt file) compare
BT2836 -3.8 -14.2 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT2837 -3.8 -12.9 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2078 -3.8 -9.1 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT1858 -3.8 -4.5 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3719 -3.7 -5.1 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT2403 -3.7 -8.6 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT3718 -3.7 -9.4 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT1860 -3.6 -3.5 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT3193 -3.6 -12.0 putative coenzyme A transferase (NCBI ptt file) compare
BT1379 -3.6 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT1861 -3.5 -5.3 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT2077 -3.4 -5.2 acetolactate synthase large subunit (NCBI ptt file) compare
BT2076 -3.4 -6.6 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0532 -3.4 -3.3 anthranilate synthase component I (NCBI ptt file) compare
BT1374 -3.4 -4.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT1859 -3.4 -3.3 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3717 -3.3 -2.3 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT0527 -3.3 -2.3 tryptophan synthase alpha chain (NCBI ptt file) compare
BT0674 -3.2 -2.2 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT1380 -3.2 -2.2 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT1476 -3.2 -3.1 aspartate aminotransferase (NCBI ptt file) compare
BT3184 -3.2 -15.5 L-aspartate oxidase (NCBI ptt file) compare
BT3394 -3.2 -10.7 putative arginine decarboxylase (NCBI ptt file) compare
BT1607 -3.2 -5.2 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT0530 -3.1 -3.0 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT0202 -3.1 -4.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT0200 -3.1 -3.0 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT0528 -3.1 -3.0 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT4699 -3.0 -3.5 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT0533 -3.0 -2.1 tryptophan synthase beta chain (NCBI ptt file) compare
BT1747 -3.0 -6.9 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT1152 -3.0 -2.9 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT0203 -2.9 -2.8 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0201 -2.9 -2.8 histidinol dehydrogenase (NCBI ptt file) compare
BT2160 -2.9 -10.4 SusR4: regulator of disaccharide catabolism (SusR4) (from data) compare
BT4211 -2.8 -2.0 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT3253 -2.8 -2.7 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT3758 -2.7 -3.2 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT1375 -2.7 -9.5 aspartokinase (NCBI ptt file) compare
BT1733 -2.7 -3.2 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0738 -2.7 -3.6 serine hydroxymethyltransferase (NCBI ptt file) compare
BT3320 -2.6 -7.4 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1970 -2.6 -8.6 glutamate dehydrogenase (NCBI ptt file) compare
BT0529 -2.5 -2.4 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3935 -2.5 -4.7 aminotransferase (NCBI ptt file) compare
BT2129 -2.5 -5.3 aspartate--ammonia ligase (NCBI ptt file) compare
BT0651 -2.5 -2.4 thiamine biosynthesis protein ThiG (NCBI ptt file) compare
BT3361 -2.5 -7.2 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT1746 -2.4 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1104 -2.4 -1.2 small heat shock protein (NCBI ptt file) compare
BT2159 -2.4 -5.7 3-ketoglucose reductase (NAD(P)H) (from data) compare
BT4339 -2.3 -2.8 glutamine synthetase (NCBI ptt file) compare
BT4103 -2.3 -2.2 putative Sec-independent protein translocase (NCBI ptt file) compare
BT2080 -2.2 -3.8 L-cysteine desulfidase cdsB (from data) compare
BT1381 -2.1 -4.6 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT0700 -2.1 -5.0 GTP pyrophosphokinase (NCBI ptt file) compare
BT3918 -2.1 -3.0 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3866 -2.1 -12.1 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT1222 -2.1 -2.0 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT4097 -2.1 -2.0 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT3845 -2.0 -1.4 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT1378 -2.0 -2.3 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT1336 -1.9 -3.4 putative translation initiation inhibitor (NCBI ptt file) compare
BT0648 -1.9 -4.6 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT1232 -1.9 -2.1 hypothetical protein (NCBI ptt file) compare
BT2546 -1.9 -7.3 transcriptional regulator (NCBI ptt file) compare
BT1154 -1.8 -2.9 ATP-independent RNA helicase (NCBI ptt file) compare
BT1844 -1.8 -3.3 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT1220 -1.8 -1.2 6-phosphogluconolactonase (NCBI ptt file) compare
BT0790 -1.8 -3.2 phosphomethylpyrimidine kinase (NCBI ptt file) compare
BT4102 -1.8 -1.5 putative Sec-independent protein translocase (NCBI ptt file) compare
BT1421 -1.8 -3.6 hypothetical protein (NCBI ptt file) compare
BT0477 -1.8 -2.1 putative phosphatase (NCBI ptt file) compare
BT3737 -1.8 -2.0 hypothetical protein (NCBI ptt file) compare
BT2344 -1.7 -1.6 hypothetical protein (NCBI ptt file) compare
BT3762 -1.7 -3.5 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT4328 -1.7 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2742 -1.7 -2.3 integrase, site-specific recombinase (NCBI ptt file) compare
BT3368 -1.7 -2.0 putative glycosyltransferase (NCBI ptt file) compare
BT4258 -1.7 -6.6 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT0771 -1.7 -5.5 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4322 -1.7 -2.6 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT4612 -1.7 -7.2 conserved hypothetical protein (NCBI ptt file) compare
BT0650 -1.7 -4.2 thiamine biosynthesis protein ThiC (NCBI ptt file) compare
BT0223 -1.6 -2.9 two-component system response regulator (NCBI ptt file) compare
BT1363 -1.6 -1.6 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT1944 -1.6 -2.5 putative transposase (NCBI ptt file) compare
BT1072 -1.6 -2.0 hypothetical protein (NCBI ptt file) compare
BT0531 -1.5 -2.2 anthranilate synthase component II (NCBI ptt file) compare
BT0476 -1.5 -1.7 D-mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT3260 -1.5 -2.4 DNA polymerase I (NCBI ptt file) compare
BT1608 -1.5 -6.1 capsule biosynthesis protein capA (NCBI ptt file) compare
BT0647 -1.5 -2.1 thiamine phosphate pyrophosphorylase (NCBI ptt file) compare
BT2417 -1.5 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0549 -1.4 -2.3 putative thioredoxin (NCBI ptt file) compare
BT0596 -1.4 -1.3 putative transcriptional regulator (NCBI ptt file) compare
BT1107 -1.4 -2.3 ferritin A (NCBI ptt file) compare
BT3197 -1.4 -0.9 hypothetical protein (NCBI ptt file) compare
BT1221 -1.4 -2.7 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT2172 -1.4 -8.2 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT1835 -1.4 -3.7 biotin synthase (NCBI ptt file) compare
BT1972 -1.4 -7.8 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT4003 -1.4 -3.3 stationary-phase survival protein SurE (NCBI ptt file) compare
BT1679 -1.4 -2.2 hypothetical protein (NCBI ptt file) compare
BT1299 -1.4 -2.8 V-type ATP synthase subunit A (NCBI ptt file) compare
BT0156 -1.4 -2.6 transcriptional regulator (NCBI ptt file) compare
BT1420 -1.4 -3.8 conserved hypothetical protein (NCBI ptt file) compare
BT0638 -1.4 -4.3 putative methionine aminopeptidase A (NCBI ptt file) compare
BT1867 -1.3 -3.0 hypothetical protein (NCBI ptt file) compare
BT0652 -1.3 -1.7 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) compare
BT3194 -1.3 -3.4 hypothetical protein (NCBI ptt file) compare
BT0323 -1.3 -2.4 hypothetical protein (NCBI ptt file) compare
BT4698 -1.3 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1561 -1.3 -1.1 hypothetical protein (NCBI ptt file) compare
BT4644 -1.3 -3.1 putative anti-sigma factor (NCBI ptt file) compare
BT0033 -1.3 -1.4 hypothetical protein (NCBI ptt file) compare
BT1851 -1.3 -2.7 TPR-repeat-containing protein (NCBI ptt file) compare
BT3268 -1.2 -2.9 glucose-inhibited division protein A (NCBI ptt file) compare
BT3973 -1.2 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) compare
BT0795 -1.2 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT3369 -1.2 -2.0 putative glycosyltransferase (NCBI ptt file) compare
BT4098 -1.2 -1.6 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT0352 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT2283 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT0314 -1.2 -2.5 ribosomal protein L11 methyltransferase (NCBI ptt file) compare
BT1194 -1.2 -3.2 outer membrane protein, OmpA family (NCBI ptt file) compare
BT4569 -1.2 -2.7 hypothetical protein (NCBI ptt file) compare
BT0151 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT2843 -1.2 -2.3 integrase (NCBI ptt file) compare
BT3911 -1.2 -2.3 malate dehydrogenase (NCBI ptt file) compare
BT0679 -1.2 -1.9 cation efflux system protein czcB (NCBI ptt file) compare
BT1754 -1.2 -5.9 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare
BT4571 -1.2 -1.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1173 -1.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT2057 -1.1 -3.1 hypothetical protein (NCBI ptt file) compare
BT4672 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT0882 -1.1 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0473 -1.1 -2.5 putative glycosyltransferase (NCBI ptt file) compare
BT3712 -1.1 -2.6 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT2281 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT1979 -1.1 -2.4 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT0756 -1.1 -1.7 iduronate 2-sulfatase precursor (NCBI ptt file) compare
BT2142 -1.1 -1.0 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT2071 -1.1 -4.3 isocitrate dehydrogenase [NADP] (NCBI ptt file) compare
BT0617 -1.1 -1.0 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT1580 -1.1 -2.4 lactoylglutathione lyase (NCBI ptt file) compare
BT1555 -1.1 -2.9 dioxygenase, related to 2-nitropropane dioxygenase (NCBI ptt file) compare
BT0671 -1.0 -2.0 outer membrane protein TolC, putative (NCBI ptt file) compare
BT0007 -1.0 -1.7 hypothetical protein (NCBI ptt file) compare
BT1445 -1.0 -2.8 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT0481 -1.0 -2.0 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT2170 -1.0 -3.8 hypothetical protein (NCBI ptt file) compare
BT3370 -1.0 -2.7 putative glycosyltransferase yibD (NCBI ptt file) compare
BT0878 -1.0 -0.9 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT3729 -1.0 -3.1 putative protoporphyrinogen oxidase (NCBI ptt file) compare
BT3912 -1.0 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1442 -1.0 -3.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT1524 -1.0 -1.6 hypothetical protein (NCBI ptt file) compare
BT4191 -1.0 -5.9 hypothetical protein (NCBI ptt file) compare
BT3168 -1.0 -3.7 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT2932 -1.0 -1.6 transcriptional regulator (NCBI ptt file) compare
BT1470 -1.0 -1.4 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT0961 -1.0 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT4562 -0.9 -0.9 hypothetical protein (NCBI ptt file) compare
BT1613 -0.9 -4.3 conserved hypothetical protein (NCBI ptt file) compare
BT2169 -0.9 -2.4 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2449 -0.9 -1.1 hypothetical protein (NCBI ptt file) compare
BT4483 -0.9 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT1203 -0.9 -1.1 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT3978 -0.9 -2.9 putative cardiolipin synthetase (NCBI ptt file) compare
BT1885 -0.9 -3.4 putative ATP-dependent RNA helicase (NCBI ptt file) compare
BT1909 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT1443 -0.9 -3.1 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT1849 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT4611 -0.9 -2.5 putative bacterioferritin co-migratory protein (NCBI ptt file) compare
BT4557 -0.9 -3.3 hypothetical protein (NCBI ptt file) compare
BT0321 -0.9 -1.4 cytidine/deoxycytidylate deaminase (NCBI ptt file) compare
BT1295 -0.9 -1.2 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT0999 -0.9 -2.4 putative acetyltransferase (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source palatinose hydrate in Bacteroides thetaiotaomicron VPI-5482

For carbon source palatinose hydrate across organisms