Experiment set11IT079 for Klebsiella michiganensis M5al

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
BWI76_RS20355 -7.9 -4.2 colicin V production protein compare
BWI76_RS20965 -7.7 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04250 -7.3 -5.0 homoserine kinase compare
BWI76_RS00805 -7.3 -4.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS24285 -7.1 -4.9 cystathionine beta-lyase compare
BWI76_RS21475 -7.0 -4.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04670 -6.9 -4.8 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04470 -6.7 -4.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS00845 -6.6 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00855 -6.5 -4.5 argininosuccinate lyase compare
BWI76_RS18935 -6.5 -5.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04645 -6.4 -4.4 3-dehydroquinase compare
BWI76_RS04465 -6.3 -4.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS07070 -6.2 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS23920 -6.2 -3.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS05840 -6.1 -4.2 glutamate 5-kinase compare
BWI76_RS07065 -6.0 -7.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00985 -5.9 -4.1 transcriptional regulator IlvY compare
BWI76_RS04665 -5.9 -16.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04255 -5.8 -6.9 threonine synthase compare
BWI76_RS20895 -5.6 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04685 -5.6 -9.1 putative leucine operon leader peptide compare
BWI76_RS11850 -5.5 -8.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS23715 -5.4 -7.4 2-deoxy-D-ribonate transporter 1 (from data) conserved
BWI76_RS02815 -5.3 -2.8 fructose-bisphosphatase class I compare
BWI76_RS00785 -5.2 -6.2 cystathionine gamma-synthase compare
BWI76_RS04160 -5.2 -4.9 phosphoserine phosphatase compare
BWI76_RS11860 -5.1 -6.8 anthranilate synthase component I compare
BWI76_RS21265 -5.1 -10.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01610 -5.1 -6.1 phosphoribosylamine--glycine ligase compare
BWI76_RS05835 -5.0 -3.0 gamma-glutamyl-phosphate reductase compare
BWI76_RS23730 -4.9 -6.2 glycerate kinase compare
BWI76_RS23220 -4.9 -6.9 amino-acid N-acetyltransferase compare
BWI76_RS18925 -4.9 -4.0 histidinol dehydrogenase compare
BWI76_RS04680 -4.9 -12.8 2-isopropylmalate synthase compare
BWI76_RS18940 -4.9 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS08425 -4.9 -3.3 succinyl-CoA ligase subunit beta compare
BWI76_RS26085 -4.8 -2.5 3-dehydroquinate synthase compare
BWI76_RS23360 -4.8 -2.8 diaminopimelate decarboxylase compare
BWI76_RS00990 -4.7 -6.2 ketol-acid reductoisomerase compare
BWI76_RS08750 -4.7 -1.4 kinase inhibitor compare
BWI76_RS00850 -4.6 -4.3 acetylglutamate kinase compare
BWI76_RS00980 -4.6 -9.8 PLP-dependent threonine dehydratase compare
BWI76_RS09760 -4.6 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23365 -4.5 -5.0 LysR family transcriptional regulator compare
BWI76_RS09910 -4.5 -15.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18955 -4.5 -4.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS22760 -4.5 -6.8 sulfite reductase subunit beta compare
BWI76_RS18930 -4.4 -2.3 histidinol-phosphate transaminase compare
BWI76_RS09530 -4.3 -1.3 hypothetical protein compare
BWI76_RS23695 -4.3 -8.3 deoxyribonyl-CoA synthetase (from data) compare
BWI76_RS11840 -4.3 -4.2 tryptophan synthase subunit alpha compare
BWI76_RS21465 -4.3 -4.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS25285 -4.3 -1.3 HPr family phosphocarrier protein compare
BWI76_RS02735 -4.2 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00965 -4.2 -1.3 acetolactate synthase 2 small subunit compare
BWI76_RS11845 -4.2 -1.5 tryptophan synthase subunit beta compare
BWI76_RS01615 -4.2 -9.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS10990 -4.2 -1.9 dihydroorotase compare
BWI76_RS04675 -4.2 -3.9 3-isopropylmalate dehydrogenase compare
BWI76_RS26055 -4.2 -6.6 siroheme synthase compare
BWI76_RS21580 -4.2 -2.2 SsrA-binding protein compare
BWI76_RS00835 -4.1 -9.0 phosphoenolpyruvate carboxylase compare
BWI76_RS22765 -4.1 -12.9 sulfite reductase subunit alpha compare
BWI76_RS03010 -4.0 -5.9 ornithine carbamoyltransferase compare
BWI76_RS18950 -4.0 -5.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26620 -3.9 -1.2 Fe-S biogenesis protein NfuA compare
BWI76_RS01655 -3.9 -4.7 homoserine O-succinyltransferase compare
BWI76_RS09635 -3.9 -2.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS04245 -3.9 -9.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS09755 -3.9 -5.1 phosphoserine transaminase compare
BWI76_RS00975 -3.9 -8.0 dihydroxy-acid dehydratase compare
BWI76_RS25600 -3.8 -1.2 tRNA-Thr compare
BWI76_RS16920 -3.8 -1.6 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS02530 -3.7 -2.5 tRNA dimethylallyltransferase compare
BWI76_RS02995 -3.7 -5.8 aspartate carbamoyltransferase compare
BWI76_RS01200 -3.7 -2.5 diaminopimelate epimerase compare
BWI76_RS08430 -3.6 -5.6 succinate--CoA ligase subunit alpha compare
BWI76_RS06525 -3.6 -4.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09660 -3.6 -2.4 DNA translocase FtsK compare
BWI76_RS20350 -3.6 -5.0 amidophosphoribosyltransferase compare
BWI76_RS11855 -3.5 -5.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS11335 -3.5 -1.8 tautomerase compare
BWI76_RS23700 -3.5 -7.8 glycerate CoA-transferase (from data) compare
BWI76_RS09615 -3.4 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS08385 -3.4 -3.5 citrate (Si)-synthase compare
BWI76_RS01210 -3.3 -3.3 tyrosine recombinase XerC compare
BWI76_RS11965 -3.2 -2.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS23240 -3.2 -4.3 exonuclease V subunit gamma compare
BWI76_RS04240 -3.2 -2.2 thr operon leader peptide compare
BWI76_RS20435 -3.1 -1.3 chorismate synthase compare
BWI76_RS18165 -3.1 -1.3 NUDIX pyrophosphatase compare
BWI76_RS23735 -3.0 -2.6 sugar diacid utilization regulator compare
BWI76_RS18920 -3.0 -3.0 ATP phosphoribosyltransferase compare
BWI76_RS27385 -3.0 -3.6 orotate phosphoribosyltransferase compare
BWI76_RS20640 -3.0 -4.0 cysteine synthase A compare
BWI76_RS09610 -2.9 -2.8 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS23710 -2.9 -3.5 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) compare
BWI76_RS23230 -2.9 -5.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS21075 -2.8 -1.4 membrane protein compare
BWI76_RS22690 -2.8 -2.5 adenylyl-sulfate kinase compare
BWI76_RS16275 -2.8 -1.9 fumarate hydratase FumA compare
BWI76_RS11255 -2.8 -2.2 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS21685 -2.7 -1.4 hypothetical protein compare
BWI76_RS08405 -2.7 -3.2 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS22755 -2.7 -4.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09970 -2.6 -4.3 porin OmpA compare
BWI76_RS00240 -2.5 -1.9 FMN-binding protein MioC compare
BWI76_RS25115 -2.5 -2.9 argininosuccinate synthase compare
BWI76_RS19700 -2.5 -1.7 deoxyribonuclease IV compare
BWI76_RS08535 -2.5 -2.2 translocation protein TolB compare
BWI76_RS12790 -2.5 -1.5 lactate dehydrogenase compare
BWI76_RS14935 -2.5 -1.5 NIPSNAP family containing protein compare
BWI76_RS09640 -2.5 -2.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS26405 -2.5 -1.0 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS23705 -2.4 -2.8 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS01185 -2.4 -1.6 adenylate cyclase compare
BWI76_RS15825 -2.3 -1.5 hypothetical protein compare
BWI76_RS13820 -2.3 -2.2 hypothetical protein compare
BWI76_RS17155 -2.3 -1.9 hypothetical protein compare
BWI76_RS26890 -2.2 -1.3 hypothetical protein compare
BWI76_RS00960 -2.2 -3.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS21370 -2.2 -1.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS07985 -2.2 -1.1 fluoride ion transporter CrcB compare
BWI76_RS21070 -2.2 -2.1 outer membrane protein assembly factor BamB compare
BWI76_RS26570 -2.1 -2.8 anion permease compare
BWI76_RS27430 -2.1 -0.9 (p)ppGpp synthetase compare
BWI76_RS15845 -2.0 -1.0 hypothetical protein compare
BWI76_RS27390 -2.0 -2.8 ribonuclease PH compare
BWI76_RS21460 -2.0 -1.2 translation inhibitor protein RaiA compare
BWI76_RS05200 -2.0 -2.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS04305 -1.9 -1.1 molecular chaperone DnaJ compare
BWI76_RS16355 -1.9 -1.7 electron transport complex subunit A compare
BWI76_RS16015 -1.8 -3.8 pheromone autoinducer 2 transporter compare
BWI76_RS12225 -1.8 -2.6 hypothetical protein compare
BWI76_RS07780 -1.8 -1.0 hypothetical protein compare
BWI76_RS21140 -1.8 -1.9 molecular chaperone HscA compare
BWI76_RS25220 -1.8 -2.3 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS06175 -1.7 -1.6 DUF188 domain-containing protein compare
BWI76_RS22420 -1.7 -1.9 LacI family transcriptional regulator compare
BWI76_RS08390 -1.7 -2.6 hypothetical protein compare
BWI76_RS23895 -1.7 -1.0 Xaa-Pro aminopeptidase compare
BWI76_RS01940 -1.7 -3.2 hypothetical protein compare
BWI76_RS21570 -1.6 -1.4 RnfH family protein compare
BWI76_RS12465 -1.6 -0.9 phage shock protein D compare
BWI76_RS26175 -1.6 -3.0 DeoR/GlpR family transcriptional regulator compare
BWI76_RS20440 -1.6 -1.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS27760 -1.6 -2.2 lactam utilization protein LamB compare
BWI76_RS19330 -1.6 -1.1 HAD family hydrolase compare
BWI76_RS12170 -1.6 -1.2 hypothetical protein compare
BWI76_RS23725 -1.6 -3.3 2-deoxy-D-ribonate transporter 2 (from data) compare
BWI76_RS05260 -1.6 -1.6 chaperone compare
BWI76_RS08360 -1.6 -2.1 LamB/YcsF family protein compare
BWI76_RS21810 -1.6 -1.5 universal stress protein compare
BWI76_RS04050 -1.5 -3.1 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS01115 -1.5 -1.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01070 -1.5 -5.6 thiol reductase thioredoxin compare
BWI76_RS07545 -1.5 -3.5 amidase compare
BWI76_RS13805 -1.5 -1.7 inorganic diphosphatase compare
BWI76_RS13050 -1.5 -1.5 transcriptional regulator compare
BWI76_RS05070 -1.5 -1.6 type II secretion system protein GspH compare
BWI76_RS01885 -1.4 -0.9 CsbD family protein compare
BWI76_RS20230 -1.4 -1.0 hypothetical protein compare
BWI76_RS06800 -1.4 -0.9 DUF2496 domain-containing protein compare
BWI76_RS02655 -1.4 -1.5 hypothetical protein compare
BWI76_RS26045 -1.4 -1.2 nitrite reductase small subunit compare
BWI76_RS25645 -1.4 -3.0 shikimate dehydrogenase compare
BWI76_RS23480 -1.4 -5.6 EAL domain-containing protein compare
BWI76_RS18360 -1.4 -1.3 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS24900 -1.4 -1.5 DeoR family transcriptional regulator compare
BWI76_RS06185 -1.4 -5.5 shikimate kinase II compare
BWI76_RS00065 -1.4 -2.7 MurR/RpiR family transcriptional regulator compare
BWI76_RS25245 -1.4 -1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS05015 -1.3 -1.4 transcriptional regulator compare
BWI76_RS20650 -1.3 -1.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS23025 -1.3 -2.5 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS22620 -1.3 -2.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS12340 -1.3 -2.6 molecular chaperone Tir compare
BWI76_RS23195 -1.3 -2.9 ethanolamine utilization protein EutP compare
BWI76_RS11700 -1.3 -1.1 hypothetical protein compare
BWI76_RS21130 -1.3 -1.3 Fe-S assembly protein IscX compare
BWI76_RS15850 -1.3 -1.0 DUF1317 domain-containing protein compare
BWI76_RS15285 -1.3 -1.9 stress protection protein MarC compare
BWI76_RS04705 -1.3 -2.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS26000 -1.3 -3.4 aspartate aminotransferase family protein compare
BWI76_RS08330 -1.2 -1.1 hypothetical protein compare
BWI76_RS00640 -1.2 -1.8 L-rhamnose mutarotase compare
BWI76_RS19730 -1.2 -1.8 1-phosphofructokinase compare
BWI76_RS16035 -1.2 -1.3 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS06435 -1.2 -2.5 MFS transporter compare
BWI76_RS02180 -1.2 -0.9 hypothetical protein compare
BWI76_RS03295 -1.2 -1.5 transposase compare
BWI76_RS00095 -1.2 -1.6 DNA-binding transcriptional regulator compare
BWI76_RS17025 -1.2 -2.8 putative major type 1 subunit fimbrin compare
BWI76_RS02410 -1.2 -1.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS13415 -1.2 -2.7 spermidine/putrescine ABC transporter permease compare
BWI76_RS07475 -1.2 -0.6 DNA-binding transcriptional regulator RamA compare
BWI76_RS13330 -1.2 -1.0 tellurite resistance methyltransferase TehB compare
BWI76_RS20795 -1.2 -0.7 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS15830 -1.2 -2.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Klebsiella michiganensis M5al

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms