Experiment set11IT077 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Cotarnine Chloride 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -3.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -3.7 -4.4 SirA-like protein compare
Psyr_3008 -3.6 -9.1 Undecaprenyl-diphosphatase compare
Psyr_1613 -3.5 -4.7 septum site-determining protein MinC compare
Psyr_2617 -3.4 -3.9 Secretion protein HlyD compare
Psyr_4340 -3.2 -9.6 phosphomethylpyrimidine kinase, putative compare
Psyr_4686 -3.2 -6.0 8-amino-7-oxononanoate synthase compare
Psyr_1907 -3.2 -4.7 GTP cyclohydrolase I compare
Psyr_4203 -2.8 -3.3 SsrA-binding protein compare
Psyr_0454 -2.8 -5.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4341 -2.6 -7.0 thiamine-phosphate diphosphorylase compare
Psyr_0475 -2.5 -2.9 Protein of unknown function YGGT compare
Psyr_4740 -2.4 -6.3 thiazole-phosphate synthase compare
Psyr_5132 -2.4 -4.2 Glucose-inhibited division protein A subfamily compare
Psyr_4991 -2.4 -3.5 hypothetical protein compare
Psyr_4684 -2.4 -3.5 biotin synthesis protein BioC compare
Psyr_1556 -2.4 -3.1 hypothetical protein compare
Psyr_0849 -2.4 -10.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4687 -2.3 -7.2 biotin synthase compare
Psyr_1663 -2.2 -4.1 phosphoribosylanthranilate isomerase compare
Psyr_0575 -2.2 -4.0 protease FtsH subunit HflC compare
Psyr_0493 -2.0 -4.4 CheW-like protein compare
Psyr_4091 -1.9 -3.8 8-oxo-dGTPase compare
Psyr_4362 -1.9 -3.7 Rare lipoprotein A compare
Psyr_3208 -1.9 -3.0 NADH dehydrogenase subunit M compare
Psyr_4683 -1.9 -4.4 dethiobiotin synthase compare
Psyr_0918 -1.8 -10.8 ABC transporter compare
Psyr_0487 -1.7 -2.9 glutathione synthase compare
Psyr_4580 -1.7 -2.8 anthranilate phosphoribosyltransferase compare
Psyr_1975 -1.6 -4.1 Integrase, catalytic region compare
Psyr_0917 -1.6 -9.4 ABC-2 compare
Psyr_4464 -1.5 -1.8 lipoprotein, putative compare
Psyr_4627 -1.5 -2.2 dimethyladenosine transferase compare
Psyr_1930 -1.5 -3.2 hypothetical protein compare
Psyr_0372 -1.5 -3.3 CDS compare
Psyr_4884 -1.5 -4.9 Rhodanese-like protein compare
Psyr_0574 -1.4 -5.0 protease FtsH subunit HflK compare
Psyr_5133 -1.4 -3.6 tRNA modification GTPase trmE compare
Psyr_2823 -1.4 -1.5 hypothetical protein compare
Psyr_3808 -1.4 -1.0 hypothetical protein compare
Psyr_5135 -1.3 -2.0 Protein of unknown function DUF37 compare
Psyr_0565 -1.3 -4.8 Protein of unknown function UPF0126 compare
Psyr_1373 -1.3 -2.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3604 -1.3 -2.5 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_0259 -1.3 -3.1 Osmolarity sensor protein envZ compare
Psyr_0831 -1.3 -2.3 Two-component response regulator CbrB compare
Psyr_2847 -1.3 -2.7 hypothetical protein compare
Psyr_3013 -1.3 -2.4 magnesium chelatase subunit ChlD compare
Psyr_1408 -1.2 -2.4 Holliday junction endonuclease RuvC compare
Psyr_1418 -1.2 -2.4 Radical SAM compare
Psyr_4581 -1.2 -2.8 anthranilate synthase, component II compare
Psyr_2221 -1.2 -1.6 sarcosine oxidase, gamma subunit compare
Psyr_0724 -1.2 -1.8 conserved hypothetical protein compare
Psyr_3934 -1.2 -2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_2980 -1.2 -2.8 UDP-glucose pyrophosphorylase compare
Psyr_0255 -1.1 -1.3 glutamate-cysteine ligase compare
Psyr_0034 -1.1 -0.8 tryptophan synthase, beta chain compare
Psyr_3419 -1.1 -3.8 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3282 -1.1 -4.7 transcriptional regulator, TetR family compare
Psyr_1588 -1.1 -2.8 Putative exonuclease, RdgC compare
Psyr_1247 -1.1 -1.9 conserved hypothetical protein compare
Psyr_2973 -1.1 -2.0 Glyoxalase I compare
Psyr_4051 -1.1 -2.4 transcriptional regulator, ArsR family compare
Psyr_0826 -1.1 -5.1 glucose-6-phosphate isomerase compare
Psyr_1227 -1.1 -2.2 Queuosine biosynthesis protein compare
Psyr_1747 -1.1 -3.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2428 -1.0 -3.4 GCN5-related N-acetyltransferase compare
Psyr_4622 -1.0 -4.2 Nucleotidyl transferase compare
Psyr_4089 -1.0 -4.1 PAS compare
Psyr_1460 -1.0 -3.9 hypothetical protein compare
Psyr_1350 -1.0 -3.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4786 -1.0 -2.1 hypothetical protein compare
Psyr_1806 -1.0 -2.7 Ureidoglycolate hydrolase compare
Psyr_3946 -1.0 -3.6 Proteobacterial methyltransferase compare
Psyr_1667 -1.0 -3.9 Colicin V production protein compare
Psyr_1317 -1.0 -1.5 conserved hypothetical protein compare
Psyr_3640 -0.9 -2.2 conserved hypothetical protein compare
Psyr_4822 -0.9 -2.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4519 -0.9 -5.6 General substrate transporter:Major facilitator superfamily compare
Psyr_3806 -0.9 -3.1 hypothetical protein compare
Psyr_4754 -0.9 -1.3 16S rRNA m(2)G-966 methyltransferase compare
Psyr_2562 -0.9 -1.5 hypothetical protein compare
Psyr_1037 -0.9 -3.2 ribosomal subunit interface protein, putative compare
Psyr_2030 -0.9 -1.7 Calcium-binding EF-hand compare
Psyr_3315 -0.9 -1.5 conserved hypothetical protein compare
Psyr_1903 -0.9 -2.5 conserved hypothetical protein compare
Psyr_4317 -0.9 -4.3 Probable taurine catabolism dioxygenase-like protein compare
Psyr_1357 -0.9 -3.0 RNase HII compare
Psyr_2345 -0.9 -3.6 ea59 protein compare
Psyr_4480 -0.9 -1.8 outer membrane transport energization protein TonB compare
Psyr_1931 -0.9 -3.1 hypothetical protein compare
Psyr_1935 -0.9 -3.3 Protein of unknown function DUF796 compare
Psyr_3581 -0.9 -3.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_1097 -0.9 -1.2 glycine cleavage system H protein compare
Psyr_2854 -0.9 -3.2 conserved hypothetical protein compare
Psyr_3954 -0.9 -3.6 GTP-binding protein LepA compare
Psyr_3807 -0.9 -3.8 hypothetical protein compare
Psyr_4609 -0.8 -6.0 anthranilate synthase, component I compare
Psyr_0215 -0.8 -5.3 Exodeoxyribonuclease III xth compare
Psyr_2807 -0.8 -1.5 NinB compare
Psyr_4254 -0.8 -2.0 conserved hypothetical protein compare
Psyr_2347 -0.8 -2.2 hypothetical protein compare
Psyr_3090 -0.8 -1.7 hypothetical protein compare
Psyr_1505 -0.8 -1.8 Protein of unknown function DUF156 compare
Psyr_2067 -0.8 -1.7 ABC transporter compare
Psyr_4112 -0.8 -4.9 Protein of unknown function UPF0011 compare
Psyr_2312 -0.8 -1.2 Protein of unknown function DUF24 compare
Psyr_1751 -0.8 -2.7 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3040 -0.8 -1.7 conserved hypothetical protein compare
Psyr_2095 -0.8 -2.6 Conserved TM helix compare
Psyr_3696 -0.8 -2.8 23S rRNA m(5)U-1939 methyltransferase compare
Psyr_2899 -0.8 -2.6 conserved hypothetical protein compare
Psyr_2664 -0.8 -4.0 hypothetical protein compare
Psyr_4566 -0.8 -4.9 Peptidase M23B compare
Psyr_1832 -0.8 -1.4 Exonuclease compare
Psyr_1555 -0.8 -2.3 Cobyrinic acid a,c-diamide synthase compare
Psyr_2602 -0.8 -3.3 transcriptional regulator, LuxR family compare
Psyr_0491 -0.8 -2.2 chemotaxis sensory transducer compare
Psyr_2227 -0.8 -1.5 conserved hypothetical protein compare
Psyr_3034 -0.8 -1.6 conserved hypothetical protein compare
Psyr_4361 -0.8 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3289 -0.8 -2.0 3-ketoacyl-CoA thiolase compare
Psyr_4093 -0.8 -2.7 glutamate N-acetyltransferase compare
Psyr_2254 -0.7 -2.6 Phosphonate metabolism PhnJ compare
Psyr_1268 -0.7 -3.8 extracellular solute-binding protein, family 3:SLT compare
Psyr_3199 -0.7 -1.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2092 -0.7 -1.7 Protein of unknown function 1935 compare
Psyr_2787 -0.7 -1.7 hypothetical protein compare
Psyr_4343 -0.7 -4.2 Sel1-like repeat protein compare
Psyr_1270 -0.7 -1.2 conserved hypothetical protein compare
Psyr_2921 -0.7 -1.4 ADP-ribosylglycohydrolase compare
Psyr_3084 -0.7 -2.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3088 -0.7 -2.8 Glycosyl transferase, group 1 compare
Psyr_0919 -0.7 -4.7 Chromosome segregation ATPase-like protein compare
Psyr_2462 -0.7 -2.5 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1885 -0.7 -1.6 hypothetical protein compare
Psyr_4562 -0.7 -2.8 conserved domain protein compare
Psyr_0954 -0.7 -1.5 Protein of unknown function UPF0153 compare
Psyr_2990 -0.7 -1.4 conserved hypothetical protein compare
Psyr_5130 -0.7 -4.1 chromosome segregation ATPase compare
Psyr_2126 -0.7 -2.3 4-carboxymuconolactone decarboxylase compare
Psyr_2833 -0.7 -1.5 CDS compare
Psyr_2987 -0.6 -2.4 Cof protein:HAD-superfamily hydrolase, subfamily IIB compare
Psyr_4138 -0.6 -2.2 Toluene tolerance compare
Psyr_0153 -0.6 -1.7 conserved hypothetical protein compare
Psyr_1371 -0.6 -3.3 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3005 -0.6 -1.1 3-oxoadipate enol-lactonase compare
Psyr_3293 -0.6 -1.4 UspA compare
Psyr_4115 -0.6 -0.9 phosphoheptose isomerase compare
Psyr_3131 -0.6 -3.6 Secretion protein HlyD compare
Psyr_3290 -0.6 -2.0 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0774 -0.6 -2.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_4584 -0.6 -3.8 Protein of unknown function DUF144 compare
Psyr_3179 -0.6 -1.2 DNA translocase FtsK compare
Psyr_2601 -0.6 -3.7 regulatory protein, LuxR compare
Psyr_0528 -0.6 -1.6 Carbamoyltransferase compare
Psyr_3164 -0.6 -3.9 Protein of unknown function UPF0005 compare
Psyr_2143 -0.6 -1.3 delta1-piperideine 2-carboxylate reductase compare
Psyr_0571 -0.6 -1.8 tRNA isopentenyltransferase compare
Psyr_3547 -0.6 -2.0 transcriptional regulator, TetR family compare
Psyr_2770 -0.6 -2.7 tail fiber domain protein compare
Psyr_0025 -0.6 -2.2 shikimate dehydrogenase compare
Psyr_1802 -0.6 -1.2 transcriptional regulator, AsnC family compare
Psyr_2738 -0.6 -2.5 regulatory protein, LysR compare
Psyr_4830 -0.6 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4920 -0.6 -1.3 conserved hypothetical bacteriophage protein compare
Psyr_1419 -0.6 -1.6 preQ(0) biosynthesis protein QueC compare
Psyr_0579 -0.6 -4.3 RNAse R compare
Psyr_1404 -0.6 -3.4 Ferritin and Dps compare
Psyr_2769 -0.6 -1.3 conserved hypothetical protein compare
Psyr_0979 -0.6 -1.8 conserved hypothetical protein compare
Psyr_2520 -0.6 -0.9 SOS-response transcriptional repressor, LexA compare
Psyr_2406 -0.6 -1.2 Flavin reductase-like protein compare
Psyr_1864 -0.6 -1.9 spermidine synthase compare
Psyr_2535 -0.6 -1.9 GGDEF domain protein compare
Psyr_1163 -0.6 -1.4 Isochorismatase hydrolase compare
Psyr_4893 -0.6 -1.1 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0202 -0.6 -3.6 transcriptional regulator, LysR family compare
Psyr_0638 -0.6 -1.7 Peptidase S16, lon N-terminal compare
Psyr_2071 -0.6 -0.5 outer membrane lipoprotein OprI compare
Psyr_3323 -0.6 -1.5 conserved hypothetical protein compare
Psyr_1212 -0.6 -1.6 type III secretion protein HrpO compare
Psyr_0550 -0.6 -2.4 Protein of unknown function UPF0227 compare
Psyr_4881 -0.6 -2.0 RNA methyltransferase TrmH, group 2 compare
Psyr_3158 -0.5 -2.5 FAD dependent oxidoreductase compare
Psyr_2471 -0.5 -1.0 hydroxymethylglutaryl-CoA lyase compare
Psyr_0282 -0.5 -2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0792 -0.5 -1.7 conserved hypothetical protein compare
Psyr_0920 -0.5 -4.7 Glycosyl transferase, group 1 compare
Psyr_1929 -0.5 -2.1 hypothetical protein compare
Psyr_2844 -0.5 -1.6 hypothetical protein compare
Psyr_2031 -0.5 -1.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_0827 -0.5 -2.4 pantothenate synthetase compare
Psyr_2346 -0.5 -2.0 conserved hypothetical protein compare
Psyr_2593 -0.5 -1.6 ABC transporter compare
Psyr_1791 -0.5 -1.6 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0573 -0.5 -2.4 GTP-binding protein HflX compare
Psyr_4512 -0.5 -2.5 putative phage-related protein compare
Psyr_3202 -0.5 -1.0 NADH dehydrogenase subunit G compare
Psyr_2629 -0.5 -2.9 von Willebrand factor, type A compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Cotarnine Chloride across organisms