Experiment set11IT077 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Cotarnine Chloride 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_2767 +1.5 4.3 Glycoside hydrolase, family 19 compare
Psyr_0037 +1.1 1.9 Protein of unknown function DUF1458 compare
Psyr_1138 +1.0 2.9 GCN5-related N-acetyltransferase compare
Psyr_1616 +0.9 1.8 Rieske [2Fe-2S] region compare
Psyr_4224 +0.9 1.9 conserved hypothetical protein compare
Psyr_0635 +0.9 2.1 MaoC-like dehydratase compare
Psyr_1881 +0.9 3.1 conserved hypothetical protein compare
Psyr_3755 +0.8 2.1 conserved hypothetical protein compare
Psyr_2887 +0.8 2.3 Endoribonuclease L-PSP compare
Psyr_1402 +0.8 3.0 SlyX compare
Psyr_4940 +0.8 2.4 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2646 +0.8 5.8 Radical SAM compare
Psyr_3142 +0.8 2.2 general secretion pathway protein N, putative compare
Psyr_2057 +0.8 2.6 acyl-CoA thioesterase II, putative compare
Psyr_1067 +0.8 3.0 GTP cyclohydrolase subunit MoaC compare
Psyr_2468 +0.8 2.4 Enoyl-CoA hydratase/isomerase compare
Psyr_3555 +0.8 1.9 aspartate kinase compare
Psyr_2752 +0.7 1.7 conserved hypothetical protein compare
Psyr_4454 +0.7 2.2 HupE/UreJ protein compare
Psyr_2435 +0.7 3.1 Xylulokinase compare
Psyr_3692 +0.7 0.9 conserved hypothetical protein compare
Psyr_0674 +0.7 1.4 Protein of unknown function UPF0029 compare
Psyr_2774 +0.7 1.6 Bacteriophage lambda tail assembly I compare
Psyr_0425 +0.7 2.6 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_2554 +0.7 2.2 Fatty acid desaturase compare
Psyr_4143 +0.7 1.4 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3039 +0.7 1.5 protein of unknown function DUF883 compare
Psyr_2256 +0.7 2.3 ABC transporter compare
Psyr_4336 +0.7 1.5 ribosomal large subunit pseudouridine synthase E compare
Psyr_0441 +0.6 2.2 conserved hypothetical protein compare
Psyr_2215 +0.6 3.0 CheW-like protein compare
Psyr_3938 +0.6 2.3 Amidase compare
Psyr_3673 +0.6 1.6 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_2383 +0.6 1.4 Protein of unknown function DUF72 compare
Psyr_1405 +0.6 2.5 hypothetical protein compare
Psyr_2342 +0.6 2.1 CBS:Transporter-associated region:Integral membrane protein TerC compare
Psyr_5036 +0.6 2.1 Response regulator receiver compare
Psyr_4450 +0.6 3.4 transcriptional regulator, TetR family compare
Psyr_3342 +0.6 1.7 conserved hypothetical protein compare
Psyr_2538 +0.6 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2014 +0.6 2.4 conserved hypothetical protein compare
Psyr_2557 +0.6 1.5 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_2317 +0.6 1.8 CDS compare
Psyr_3280 +0.6 1.4 methylthioadenosine phosphorylase compare
Psyr_4831 +0.6 1.9 ABC transporter compare
Psyr_1893 +0.6 2.8 Isochorismatase hydrolase compare
Psyr_3262 +0.6 1.4 dnaK suppressor protein, putative compare
Psyr_2741 +0.6 2.6 Beta-lactamase compare
Psyr_1595 +0.6 3.2 Protein of unknown function DUF1232 compare
Psyr_0248 +0.6 1.7 conserved hypothetical protein compare
Psyr_3812 +0.6 1.7 CDS compare
Psyr_3028 +0.6 1.2 Protein of unknown function DUF28 compare
Psyr_1610 +0.6 2.4 ribosomal large subunit pseudouridine synthase A compare
Psyr_3915 +0.6 2.1 Alpha/beta hydrolase fold protein compare
Psyr_1953 +0.6 0.7 conserved hypothetical protein compare
Psyr_3932 +0.6 1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3288 +0.6 1.6 conserved hypothetical protein compare
Psyr_4750 +0.6 1.9 cell division ATP-binding protein FtsE compare
Psyr_2402 +0.6 2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1811 +0.5 1.5 transcriptional regulator, GntR family compare
Psyr_2196 +0.5 1.2 Urease accessory protein UreG compare
Psyr_0437 +0.5 1.3 acyl carrier protein, putative compare
Psyr_2543 +0.5 1.0 conserved hypothetical protein compare
Psyr_1022 +0.5 0.8 conserved hypothetical protein compare
Psyr_2151 +0.5 0.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_1955 +0.5 1.8 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_1800 +0.5 2.0 transcriptional regulator, LysR family compare
Psyr_2507 +0.5 1.4 Endoribonuclease L-PSP compare
Psyr_1377 +0.5 1.9 CinA, C-terminal compare
Psyr_2340 +0.5 1.8 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1487 +0.5 1.3 conserved hypothetical protein compare
Psyr_3111 +0.5 1.8 transcriptional regulator, LysR family compare
Psyr_1337 +0.5 1.5 Conserved hypothetical protein ArsC related protein compare
Psyr_4151 +0.5 0.9 Phosphocarrier HPr protein compare
Psyr_3676 +0.5 1.5 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3480 +0.5 2.0 Flagellar basal-body rod protein FlgC compare
Psyr_2389 +0.5 2.1 oxidoreductase, molybdopterin-binding subunit, putative compare
Psyr_0785 +0.5 1.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_4808 +0.5 1.1 conserved hypothetical protein compare
Psyr_2190 +0.5 1.4 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_4466 +0.5 1.8 Thioredoxin compare
Psyr_4113 +0.5 3.6 LppC putative lipoprotein compare
Psyr_0873 +0.5 2.5 GCN5-related N-acetyltransferase compare
Psyr_4417 +0.5 1.4 Ferredoxin--nitrite reductase compare
Psyr_2469 +0.5 2.7 Propionyl-CoA carboxylase compare
Psyr_3627 +0.5 1.2 OsmC-like protein compare
Psyr_1829 +0.5 1.8 conserved hypothetical protein compare
Psyr_0633 +0.5 1.8 conserved hypothetical protein compare
Psyr_3702 +0.5 1.0 Arsenate reductase compare
Psyr_3381 +0.5 1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2906 +0.5 1.4 Pilus retraction protein PilT compare
Psyr_3877 +0.5 2.4 Succinylglutamate desuccinylase/aspartoacylase compare
Psyr_1447 +0.5 1.0 conserved hypothetical protein compare
Psyr_4487 +0.5 1.2 Carbohydrate kinase, PfkB compare
Psyr_2890 +0.5 1.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3611 +0.5 2.4 Protein of unknown function DUF815 compare
Psyr_0470 +0.5 1.9 conserved hypothetical protein compare
Psyr_2879 +0.5 1.2 VirK compare
Psyr_1185 +0.5 1.9 type III chaperone protein ShcM compare
Psyr_2487 +0.5 1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_2245 +0.5 1.3 conserved domain protein compare
Psyr_3688 +0.5 0.8 conserved hypothetical protein compare
Psyr_1678 +0.5 0.8 Hypothetical protein compare
Psyr_0070 +0.5 1.2 hypothetical protein compare
Psyr_1255 +0.5 1.6 conserved hypothetical protein compare
Psyr_3558 +0.5 1.6 6,7-dimethyl-8-ribityllumazine synthase compare
Psyr_3048 +0.5 1.8 transcriptional regulator, LysR family compare
Psyr_0160 +0.5 2.6 GCN5-related N-acetyltransferase compare
Psyr_0176 +0.5 1.5 conserved hypothetical protein compare
Psyr_3652 +0.5 1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_1111 +0.5 0.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2051 +0.5 2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0264 +0.5 2.0 Alginate biosynthesis sensor protein KinB compare
Psyr_2081 +0.5 2.1 conserved hypothetical protein compare
Psyr_2952 +0.5 2.5 NADP oxidoreductase, coenzyme F420-dependent compare
Psyr_0511 +0.5 1.8 conserved hypothetical protein compare
Psyr_2348 +0.5 1.2 hypothetical protein compare
Psyr_1859 +0.5 1.4 conserved hypothetical protein compare
Psyr_2695 +0.4 1.5 conserved hypothetical protein compare
Psyr_4576 +0.4 2.1 OsmC-like protein compare
Psyr_1719 +0.4 1.0 conserved hypothetical protein compare
Psyr_4144 +0.4 0.7 Protein of unknown function DUF1239 compare
Psyr_2933 +0.4 1.9 transcriptional regulator, TetR family compare
Psyr_1585 +0.4 2.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_3729 +0.4 2.3 hypothetical protein compare
Psyr_2919 +0.4 2.7 conserved hypothetical protein compare
Psyr_2927 +0.4 0.8 transcriptional regulator, TetR family compare
Psyr_4455 +0.4 1.3 conserved hypothetical protein compare
Psyr_1997 +0.4 1.5 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3296 +0.4 1.5 MOSC:MOSC, N-terminal beta barrel compare
Psyr_3461 +0.4 3.4 Helix-turn-helix, Fis-type compare
Psyr_2032 +0.4 1.8 two component transcriptional regulator, winged helix family compare
Psyr_2121 +0.4 1.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1277 +0.4 1.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_2647 +0.4 2.6 hypothetical protein compare
Psyr_2726 +0.4 2.7 trans-feruloyl-CoA synthase compare
Psyr_0858 +0.4 1.6 conserved hypothetical protein compare
Psyr_3229 +0.4 2.6 Glycosyl transferase, group 1 compare
Psyr_3224 +0.4 1.5 Low molecular weight phosphotyrosine protein phosphatase compare
Psyr_5072 +0.4 0.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0636 +0.4 2.5 LrgA compare
Psyr_1087 +0.4 1.6 CDS compare
Psyr_2213 +0.4 1.3 transcriptional regulator, AraC family compare
Psyr_1080 +0.4 2.4 Excinuclease ABC, C subunit, N-terminal compare
Psyr_4730 +0.4 1.2 FecR protein compare
Psyr_1197 +0.4 1.9 type III secretion protein HrpE compare
Psyr_4710 +0.4 1.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1600 +0.4 1.4 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0276 +0.4 1.8 zinc uptake regulation protein, putative compare
Psyr_4588 +0.4 1.7 Phage GP46 compare
Psyr_2263 +0.4 1.7 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3710 +0.4 1.7 conserved hypothetical protein compare
Psyr_2047 +0.4 1.9 K+ transporting ATPase, A subunit compare
Psyr_3195 +0.4 1.3 NolW-like protein compare
Psyr_4802 +0.4 1.6 Secretion protein HlyD compare
Psyr_3082 +0.4 1.7 MltA-interacting MipA compare
Psyr_2806 +0.4 1.4 Bacteriophage Lambda NinG compare
Psyr_2998 +0.4 1.6 conserved hypothetical protein compare
Psyr_0446 +0.4 1.5 Malonate decarboxylase gamma subunit compare
Psyr_3995 +0.4 1.5 Helix-turn-helix, Fis-type compare
Psyr_2117 +0.4 1.1 conserved hypothetical protein compare
Psyr_0998 +0.4 1.8 Isochorismatase hydrolase compare
Psyr_0402 +0.4 3.6 Peptidoglycan glycosyltransferase compare
Psyr_1871 +0.4 2.0 Transglutaminase-like protein compare
Psyr_1064 +0.4 2.4 Protein of unknown function DUF328 compare
Psyr_3402 +0.4 2.0 Aldehyde dehydrogenase compare
Psyr_2680 +0.4 1.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0032 +0.4 1.8 conserved hypothetical protein compare
Psyr_4161 +0.4 1.3 Rod shape-determining protein MreD compare
Psyr_2352 +0.4 1.8 GCN5-related N-acetyltransferase compare
Psyr_5050 +0.4 1.5 transcriptional regulator, LysR family compare
Psyr_1949 +0.4 1.6 ABC-3 compare
Psyr_0545 +0.4 1.1 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_3666 +0.4 2.3 Protein of unknown function DUF195 compare
Psyr_2128 +0.4 1.3 Protein of unknown function DUF6 compare
Psyr_2967 +0.4 1.9 Secretion protein HlyD compare
Psyr_2960 +0.4 1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1211 +0.4 1.8 type III secretion protein HrpP compare
Psyr_3055 +0.4 0.9 Aminoglycoside phosphotransferase compare
Psyr_3704 +0.4 1.9 conserved hypothetical protein compare
Psyr_0271 +0.4 2.3 conserved hypothetical protein compare
Psyr_1424 +0.4 1.1 Peptidase S24, S26A and S26B compare
Psyr_2264 +0.4 0.6 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3882 +0.4 1.0 conserved hypothetical protein compare
Psyr_2688 +0.4 1.5 conserved hypothetical protein compare
Psyr_0142 +0.4 2.1 ABC transporter compare
Psyr_3236 +0.4 1.8 transcriptional regulator, LysR family compare
Psyr_0781 +0.4 1.7 Protein-glutamate methylesterase compare
Psyr_2860 +0.4 0.9 hypothetical protein compare
Psyr_4582 +0.4 0.5 hypothetical protein compare
Psyr_3191 +0.4 1.6 Protein of unknown function DUF489 compare
Psyr_1335 +0.4 2.0 Aminotransferase, class V compare
Psyr_0315 +0.4 1.7 Protein of unknown function DUF589 compare
Psyr_2344 +0.4 1.4 CDS compare
Psyr_2266 +0.4 0.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2704 +0.4 1.8 UDP-galactose 4-epimerase compare
Psyr_3854 +0.4 0.7 OmpA/MotB compare
Psyr_2350 +0.4 1.4 Protein of unknown function UPF0025 compare
Psyr_1895 +0.4 1.0 conserved hypothetical protein compare
Psyr_3920 +0.4 2.1 LSU ribosomal protein L31P compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Cotarnine Chloride across organisms