Experiment set11IT077 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS15910 +0.9 1.1 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS19550 +0.9 1.7 ABC transporter ATP-binding protein compare
PFLU_RS31290 +0.9 2.7 EamA family transporter compare
PFLU_RS05890 +0.9 1.2 recombination regulator RecX compare
PFLU_RS21705 +0.8 5.2 flagellar biosynthesis protein FliQ compare
PFLU_RS16310 +0.8 2.3 hypothetical protein compare
PFLU_RS21795 +0.7 6.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS06055 +0.7 1.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS21760 +0.7 5.9 flagellar protein export ATPase FliI compare
PFLU_RS08490 +0.7 1.3 DEAD/DEAH box helicase compare
PFLU_RS21765 +0.7 4.9 flagellar assembly protein FliH compare
PFLU_RS23165 +0.7 6.4 flagellar hook protein FlgE compare
PFLU_RS02180 +0.7 1.1 thioredoxin TrxC compare
PFLU_RS23205 +0.7 5.3 flagellar protein FlgN compare
PFLU_RS31010 +0.7 1.9 transposase compare
PFLU_RS24535 +0.7 2.5 DUF3509 domain-containing protein compare
PFLU_RS29560 +0.6 1.2 hypothetical protein compare
PFLU_RS09495 +0.6 2.5 helix-turn-helix transcriptional regulator compare
PFLU_RS26690 +0.6 2.8 hypothetical protein compare
PFLU_RS04565 +0.6 1.0 TMEM165/GDT1 family protein compare
PFLU_RS21755 +0.6 4.5 flagella biosynthesis chaperone FliJ compare
PFLU_RS21735 +0.6 5.3 flagellar hook-length control protein FliK compare
PFLU_RS21635 +0.6 3.6 flagellar motor protein compare
PFLU_RS23180 +0.6 4.6 flagellar basal body rod protein FlgB compare
PFLU_RS10405 +0.6 1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS21830 +0.6 5.7 flagellar hook-associated protein 3 compare
PFLU_RS23195 +0.6 5.3 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS29065 +0.6 0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21845 +0.6 4.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS09535 +0.6 1.1 TIGR03750 family conjugal transfer protein compare
PFLU_RS21770 +0.6 4.5 flagellar motor switch protein FliG compare
PFLU_RS25025 +0.6 2.0 hypothetical protein compare
PFLU_RS21850 +0.6 4.8 flagellar basal body L-ring protein FlgH compare
PFLU_RS21775 +0.6 4.7 flagellar basal body M-ring protein FliF compare
PFLU_RS21660 +0.6 4.9 RNA polymerase sigma factor FliA compare
PFLU_RS13945 +0.6 1.7 hypothetical protein compare
PFLU_RS21855 +0.6 4.2 flagellar basal-body rod protein FlgG compare
PFLU_RS26595 +0.6 2.1 lipoprotein compare
PFLU_RS21725 +0.6 4.4 flagellar motor switch protein FliM compare
PFLU_RS21700 +0.6 3.6 flagellar type III secretion system protein FliR compare
PFLU_RS21675 +0.5 5.0 flagellar biosynthesis protein FlhA compare
PFLU_RS23175 +0.5 3.8 flagellar basal body rod protein FlgC compare
PFLU_RS27840 +0.5 2.1 hypothetical protein compare
PFLU_RS20345 +0.5 2.5 hypothetical protein compare
PFLU_RS31780 +0.5 1.4 hypothetical protein compare
PFLU_RS05910 +0.5 1.3 response regulator transcription factor compare
PFLU_RS15785 +0.5 1.8 type II secretion system protein GspH compare
PFLU_RS07685 +0.5 1.6 transcriptional repressor LexA compare
PFLU_RS23170 +0.5 3.5 flagellar hook assembly protein FlgD compare
PFLU_RS21810 +0.5 4.8 flagellar filament capping protein FliD compare
PFLU_RS10765 +0.5 4.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS21805 +0.5 4.3 flagellar export chaperone FliS compare
PFLU_RS02765 +0.5 1.9 HupE/UreJ family protein compare
PFLU_RS25955 +0.5 1.3 hypothetical protein compare
PFLU_RS18595 +0.5 1.8 cupin domain-containing protein compare
PFLU_RS29495 +0.5 2.3 YicC family protein compare
PFLU_RS18410 +0.5 3.2 response regulator compare
PFLU_RS21710 +0.5 3.8 flagellar type III secretion system pore protein FliP compare
PFLU_RS21835 +0.5 4.5 flagellar hook-associated protein FlgK compare
PFLU_RS19935 +0.5 0.9 type II secretion system protein GspF compare
PFLU_RS02115 +0.5 1.5 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS21820 +0.5 4.0 flagellin compare
PFLU_RS05060 +0.5 2.1 GIY-YIG nuclease family protein compare
PFLU_RS14680 +0.5 1.7 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS18125 +0.5 1.7 ABC transporter ATP-binding protein compare
PFLU_RS21860 +0.5 3.1 flagellar basal body rod protein FlgF compare
PFLU_RS28315 +0.5 0.5 response regulator compare
PFLU_RS30550 +0.5 2.2 IS66 family insertion sequence hypothetical protein compare
PFLU_RS03995 +0.5 1.0 hypothetical protein compare
PFLU_RS20960 +0.5 1.5 hypothetical protein compare
PFLU_RS03260 +0.5 2.5 hypothetical protein compare
PFLU_RS05340 +0.5 0.7 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS29745 +0.5 1.7 response regulator compare
PFLU_RS11870 +0.5 1.4 type II secretion system protein GspG compare
PFLU_RS21800 +0.5 3.3 flagellar assembly protein FliT compare
PFLU_RS17060 +0.5 1.3 monooxygenase compare
PFLU_RS23895 +0.5 1.2 DUF1289 domain-containing protein compare
PFLU_RS21840 +0.5 3.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS15180 +0.5 2.4 Lrp/AsnC family transcriptional regulator compare
PFLU_RS26490 +0.4 1.5 cation diffusion facilitator family transporter compare
PFLU_RS07525 +0.4 1.2 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS05345 +0.4 1.5 hypothetical protein compare
PFLU_RS03250 +0.4 0.7 heavy-metal-associated domain-containing protein compare
PFLU_RS12650 +0.4 1.7 hypothetical protein compare
PFLU_RS19990 +0.4 1.7 iron-dicitrate ABC transporter permease FecC compare
PFLU_RS26075 +0.4 1.9 IS66 family insertion sequence hypothetical protein compare
PFLU_RS19475 +0.4 1.6 Zn-dependent hydrolase compare
PFLU_RS05720 +0.4 3.3 OmpA family protein compare
PFLU_RS02515 +0.4 1.5 flagellar motor protein MotB compare
PFLU_RS19050 +0.4 1.7 spore coat protein U domain-containing protein compare
PFLU_RS24305 +0.4 1.4 antibiotic biosynthesis monooxygenase compare
PFLU_RS19020 +0.4 3.3 fimbrial major subunit CsuA/B family protein compare
PFLU_RS21215 +0.4 1.2 YheU family protein compare
PFLU_RS13975 +0.4 1.5 hypothetical protein compare
PFLU_RS31675 +0.4 1.4 hypothetical protein compare
PFLU_RS25135 +0.4 1.1 hypothetical protein compare
PFLU_RS11340 +0.4 1.8 RraA family protein compare
PFLU_RS29930 +0.4 2.7 pyridoxal kinase PdxY compare
PFLU_RS21780 +0.4 2.0 flagellar hook-basal body complex protein FliE compare
PFLU_RS03525 +0.4 2.0 RNA polymerase sigma factor compare
PFLU_RS10595 +0.4 1.2 hypothetical protein compare
PFLU_RS04715 +0.4 1.7 D-alanine--D-alanine ligase compare
PFLU_RS17950 +0.4 0.7 hypothetical protein compare
PFLU_RS21695 +0.4 2.5 flagellar biosynthesis protein FlhB compare
PFLU_RS03025 +0.4 2.6 tRNA dihydrouridine synthase DusB compare
PFLU_RS18000 +0.4 0.6 AhpC/TSA family protein compare
PFLU_RS18585 +0.4 0.9 high frequency lysogenization protein HflD compare
PFLU_RS08560 +0.4 2.4 response regulator compare
PFLU_RS28275 +0.4 3.1 malonate decarboxylase subunit alpha compare
PFLU_RS21645 +0.4 2.7 chemotaxis protein CheA compare
PFLU_RS04075 +0.4 1.0 hypothetical protein compare
PFLU_RS01920 +0.4 2.3 hypothetical protein compare
PFLU_RS15430 +0.4 2.4 TVP38/TMEM64 family protein compare
PFLU_RS05380 +0.4 1.6 group 1 truncated hemoglobin compare
PFLU_RS26400 +0.4 1.5 HAD family hydrolase compare
PFLU_RS29045 +0.4 1.5 FadR family transcriptional regulator compare
PFLU_RS28120 +0.4 1.5 DUF1090 domain-containing protein compare
PFLU_RS11760 +0.4 1.1 GlxA family transcriptional regulator compare
PFLU_RS25815 +0.4 0.8 transcription termination/antitermination protein NusA compare
PFLU_RS12680 +0.4 1.8 DUF3995 domain-containing protein compare
PFLU_RS21730 +0.4 2.7 flagellar basal body-associated protein FliL compare
PFLU_RS20845 +0.4 0.9 hypothetical protein compare
PFLU_RS25925 +0.4 0.7 RnfH family protein compare
PFLU_RS06620 +0.4 1.6 DUF2282 domain-containing protein compare
PFLU_RS08735 +0.4 0.8 histidine phosphatase family protein compare
PFLU_RS08600 +0.4 0.9 glutaredoxin family protein compare
PFLU_RS29955 +0.4 1.3 RNA polymerase-binding protein DksA compare
PFLU_RS15265 +0.4 1.4 EAL domain-containing response regulator compare
PFLU_RS31315 +0.4 1.2 hypothetical protein compare
PFLU_RS07885 +0.4 1.9 MFS transporter compare
PFLU_RS15515 +0.4 1.7 hypothetical protein compare
PFLU_RS12320 +0.3 2.3 nicotinate phosphoribosyltransferase compare
PFLU_RS30570 +0.3 1.7 IS5/IS1182 family transposase compare
PFLU_RS04355 +0.3 1.6 hypothetical protein compare
PFLU_RS28810 +0.3 2.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS12805 +0.3 0.9 RidA family protein compare
PFLU_RS22335 +0.3 2.6 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS19225 +0.3 2.1 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS24245 +0.3 2.3 PilZ domain-containing protein compare
PFLU_RS05210 +0.3 0.7 HU family DNA-binding protein compare
PFLU_RS06165 +0.3 1.3 hypothetical protein compare
PFLU_RS19040 +0.3 1.5 spore coat protein U domain-containing protein compare
PFLU_RS16000 +0.3 1.7 transcriptional regulator FeaR compare
PFLU_RS18705 +0.3 1.1 hypothetical protein compare
PFLU_RS13690 +0.3 1.5 AAA family ATPase compare
PFLU_RS30490 +0.3 1.4 hypothetical protein compare
PFLU_RS17495 +0.3 1.2 hypothetical protein compare
PFLU_RS15630 +0.3 2.2 amidase compare
PFLU_RS13900 +0.3 0.7 hypothetical protein compare
PFLU_RS12395 +0.3 1.0 zinc ribbon domain-containing protein compare
PFLU_RS00850 +0.3 1.3 hypothetical protein compare
PFLU_RS09845 +0.3 0.8 biotin carboxyl carrier domain-containing protein compare
PFLU_RS11790 +0.3 1.0 zinc-binding dehydrogenase compare
PFLU_RS08350 +0.3 0.8 ABC transporter ATP-binding protein compare
PFLU_RS02410 +0.3 1.6 multidrug efflux SMR transporter compare
PFLU_RS20390 +0.3 0.8 DUF1654 domain-containing protein compare
PFLU_RS28685 +0.3 1.9 fumarylacetoacetate hydrolase family protein compare
PFLU_RS08420 +0.3 1.6 hypothetical protein compare
PFLU_RS02920 +0.3 1.9 ABC transporter substrate-binding protein compare
PFLU_RS16120 +0.3 1.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS24970 +0.3 1.6 chemoreceptor glutamine deamidase CheD compare
PFLU_RS25785 +0.3 1.5 BON domain-containing protein compare
PFLU_RS07045 +0.3 1.3 addiction module toxin, HicA family compare
PFLU_RS21610 +0.3 2.3 DUF2802 domain-containing protein compare
PFLU_RS06345 +0.3 1.7 ribonuclease HII compare
PFLU_RS10120 +0.3 1.4 hypothetical protein compare
PFLU_RS11915 +0.3 1.4 transposase compare
PFLU_RS11990 +0.3 1.2 hypothetical protein compare
PFLU_RS03535 +0.3 1.0 YscO family type III secretion system apparatus protein compare
PFLU_RS16600 +0.3 1.3 VOC family protein compare
PFLU_RS05875 +0.3 1.0 lysozyme compare
PFLU_RS18865 +0.3 1.2 Na+/H+ antiporter subunit G compare
PFLU_RS13905 +0.3 1.6 phage replication protein compare
PFLU_RS06680 +0.3 1.1 hypothetical protein compare
PFLU_RS12420 +0.3 1.8 MFS transporter compare
PFLU_RS21670 +0.3 2.3 flagellar biosynthesis protein FlhF compare
PFLU_RS31630 +0.3 1.0 hypothetical protein compare
PFLU_RS30725 +0.3 1.3 DUF1652 domain-containing protein compare
PFLU_RS30900 +0.3 0.6 hypothetical protein compare
PFLU_RS17150 +0.3 1.4 hypothetical protein compare
PFLU_RS27660 +0.3 1.6 LysR family transcriptional regulator compare
PFLU_RS26800 +0.3 1.2 hypothetical protein compare
PFLU_RS02310 +0.3 1.4 LPS kinase compare
PFLU_RS13120 +0.3 0.7 hypothetical protein compare
PFLU_RS25570 +0.3 0.9 OmpA family protein compare
PFLU_RS28340 +0.3 0.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS16840 +0.3 1.3 DUF2834 domain-containing protein compare
PFLU_RS09460 +0.3 1.3 hypothetical protein compare
PFLU_RS11000 +0.3 1.2 cysteine dioxygenase compare
PFLU_RS15900 +0.3 1.9 hypothetical protein compare
PFLU_RS17160 +0.3 1.3 hypothetical protein compare
PFLU_RS04845 +0.3 1.2 hypothetical protein compare
PFLU_RS12230 +0.3 1.6 carboxymuconolactone decarboxylase family protein compare
PFLU_RS11680 +0.3 1.3 G/U mismatch-specific DNA glycosylase compare
PFLU_RS13180 +0.3 1.2 hypothetical protein compare
PFLU_RS01005 +0.3 0.6 ABC transporter ATP-binding protein compare
PFLU_RS22355 +0.3 2.0 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS06170 +0.3 1.5 ribosomal RNA small subunit methyltransferase J compare
PFLU_RS01500 +0.3 0.9 cell division protein FtsQ compare
PFLU_RS02135 +0.3 1.4 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 2 genes in this experiment

For no stress control Sucrose in Pseudomonas fluorescens SBW25-INTG

For no stress control Sucrose across organisms