Experiment set11IT077 for Shewanella oneidensis MR-1

Compare to:

Sodium fumarate electron acceptor

200 most detrimental genes:

  gene name fitness t score description  
SO3714 +4.3 28.8 sugar-binding protein, putative (NCBI ptt file) compare
SOA0171 +4.1 9.5 hypothetical protein (NCBI ptt file) compare
SOA0008 +4.0 19.4 hypothetical protein (NCBI ptt file) compare
SO_A0174 +3.9 7.2 hypothetical protein (NCBI) compare
SOA0003 +3.7 34.0 type II restriction endonuclease, putative (NCBI ptt file) compare
SO3219 fliO +3.7 7.2 flagellar protein FliO (NCBI ptt file) compare
SO_A0009 +3.7 11.2 hypothetical protein (NCBI) compare
SOA0002 +3.6 34.7 type II restriction-modification system activator, putative (NCBI ptt file) compare
SOA0014 +3.6 3.3 hypothetical protein (NCBI ptt file) compare
SOA0012 umuC +3.5 21.3 umuC protein (NCBI ptt file) compare
SO_A0007 +3.5 13.8 hypothetical protein (NCBI) compare
SOA0013 umuD +3.5 8.6 umuD protein (VIMSS) compare
SOA0010 +3.5 12.1 conserved hypothetical protein (NCBI ptt file) compare
SOA0172 +3.4 13.7 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO1208 +3.3 12.7 GGDEF domain protein (NCBI ptt file) compare
SO3218 fliP +3.0 7.9 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SOA0011 +3.0 12.1 conserved hypothetical protein (NCBI ptt file) compare
SO3228 fliF +2.9 11.6 flagellar M-ring protein FliF (NCBI ptt file) compare
SO3217 fliQ +2.9 10.4 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO_A0006 +2.9 9.7 ParA family protein (NCBI) compare
SO3227 fliG +2.9 9.9 flagellar motor switch protein FliG (NCBI ptt file) compare
SO3216 fliR +2.8 8.3 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO4322 +2.8 8.6 conserved hypothetical protein (NCBI ptt file) compare
SOA0004 +2.8 9.7 type II DNA modification methyltransferase (NCBI ptt file) compare
SO1378 +2.7 4.9 ThiJ/PfpI family protein (NCBI ptt file) compare
SOA0005 +2.4 10.5 hypothetical protein (NCBI ptt file) compare
SO2727 +2.2 1.4 cytochrome c3 (NCBI ptt file) compare
SO3194 +2.1 10.0 transcriptional activator rfaH, putative (NCBI ptt file) compare
SO3188 rfbB +2.0 12.5 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
SO3173 +2.0 9.6 UDP-galactose 4-epimerase, putative (NCBI ptt file) compare
SO3237 +1.8 1.3 flagellin (NCBI ptt file) compare
SO3581 +1.8 4.2 hypothetical protein (NCBI ptt file) compare
SO3213 flhA +1.8 6.4 flagellar biosynthesis protein FlhA (NCBI ptt file) compare
SO3002 +1.7 4.3 conserved hypothetical protein (NCBI ptt file) compare
SO3183 +1.7 11.1 perosamine synthetase-related protein (NCBI ptt file) compare
SO3221 fliM +1.7 3.8 flagellar motor switch protein FliM (NCBI ptt file) compare
SO2972 +1.7 6.4 hypothetical protein (NCBI ptt file) compare
SO_A0021 +1.7 1.0 no description compare
SO3171 +1.6 6.2 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3177 +1.6 10.5 formyl transferase domain protein (NCBI ptt file) compare
SO3003 +1.5 3.3 hypothetical protein (NCBI ptt file) compare
SO3182 +1.5 7.5 acetyltransferase, GNAT family (NCBI ptt file) compare
SO1771.2 +1.5 1.9 hypothetical catalase (NCBI ptt file) compare
SO0662 +1.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO4321 +1.4 4.0 OmpA family protein (NCBI ptt file) compare
SO3215 flhB +1.4 2.5 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO0474 +1.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO2942 +1.4 5.3 hypothetical protein (NCBI ptt file) compare
SO1500 +1.4 7.1 sensory box protein (NCBI ptt file) compare
SO3157 +1.4 6.3 lipoprotein, putative (NCBI ptt file) compare
SO2992 +1.3 5.3 hypothetical protein (NCBI ptt file) compare
SO1995 +1.3 0.9 peptidyl-prolyl cis-trans isomerase, FkbP family (NCBI ptt file) compare
SO1260 +1.3 2.1 hypothetical amino acid ABC transporter (NCBI ptt file) compare
SO_3820 +1.3 2.8 no description compare
SO2959 +1.3 2.4 hypothetical protein (NCBI ptt file) compare
SO2976 +1.3 4.7 conserved hypothetical protein (NCBI ptt file) compare
SO1352 acpS +1.3 2.1 holo-(acyl-carrier protein) synthase (NCBI ptt file) compare
SO3220 fliN +1.3 2.2 flagellar motor switch protein FliN (NCBI ptt file) compare
SO2639 +1.2 1.3 hypothetical protein (NCBI ptt file) compare
SO0663 +1.2 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3193 +1.2 7.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO_2824 +1.2 2.4 no description compare
SO1475 +1.2 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2997 +1.2 2.3 hypothetical protein (NCBI ptt file) compare
SO3212 flhF +1.2 1.8 flagellar biosynthetic protein FlhF (NCBI ptt file) compare
SO2125 cheD-1 +1.2 1.9 chemotaxis protein CheD (NCBI ptt file) compare
SO3190 +1.2 7.5 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO_2993 +1.2 3.3 no description compare
SO4126 +1.2 2.0 hypothetical protein (NCBI ptt file) compare
SO3000 +1.2 3.3 conserved hypothetical protein (NCBI ptt file) compare
SO1213 +1.2 2.0 hydrolase, TatD family (NCBI ptt file) compare
SO2016 htpG +1.2 1.7 heat shock protein HtpG (NCBI ptt file) compare
SO2974 +1.2 3.1 hypothetical protein (NCBI ptt file) compare
SO2999 +1.2 2.1 hypothetical protein (NCBI ptt file) compare
SO4007 +1.1 1.2 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO2853 +1.1 3.1 3-oxoacyl-(acyl-carrier-protein) synthase III, putative (NCBI ptt file) compare
SO2974.1 +1.1 4.7 hypothetical protein (NCBI ptt file) compare
SO0448 +1.1 1.6 hypothetical protein (NCBI ptt file) compare
SO2945 +1.1 4.8 hypothetical protein (NCBI ptt file) compare
SO3251 cheR-2 +1.1 2.5 chemotaxis protein methyltransferase CheR (NCBI ptt file) compare
SO0026 +1.1 2.5 transcriptional regulator, ArsR family (NCBI ptt file) compare
SO1298.4 +1.1 1.4 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO2291 +1.1 0.9 hypothetical protein (NCBI ptt file) compare
SO3159 +1.1 5.3 conserved hypothetical protein (NCBI ptt file) compare
SO2040 +1.1 2.2 soluble lytic murein transglycosylase, putative (NCBI ptt file) compare
SO2828 +1.1 2.0 hypothetical protein (NCBI ptt file) compare
SO4209 +1.1 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2746 +1.0 0.5 conserved hypothetical protein (NCBI ptt file) compare
SO1476 smpA +1.0 1.5 small protein A (NCBI ptt file) compare
SO2950 +1.0 3.5 hypothetical protein (NCBI ptt file) compare
SO2689 +1.0 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2100 +1.0 1.9 thioredoxin family protein (NCBI ptt file) compare
SO4483 +1.0 2.3 cytochrome b, putative (NCBI ptt file) compare
SO2975 +1.0 5.3 hypothetical protein (NCBI ptt file) compare
SO4711 +1.0 4.4 HD domain protein (NCBI ptt file) compare
SO4420 +1.0 4.3 peptidase, M23/M37 family (NCBI ptt file) compare
SO0877 +1.0 1.7 acetyltransferase, GNAT family (NCBI ptt file) compare
SO3174 +1.0 6.0 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO3008 +1.0 3.1 hypothetical protein (NCBI ptt file) compare
SO2977 +1.0 4.2 hypothetical protein (NCBI ptt file) compare
SO2986 +1.0 1.0 hypothetical protein (NCBI ptt file) compare
SO2381 +1.0 0.9 hypothetical protein (NCBI ptt file) compare
SO2474 +1.0 1.6 carbonic anhydrase family protein (NCBI ptt file) compare
SO4494.1 +1.0 0.9 hypothetical protein (NCBI ptt file) compare
SO4204 tatC +1.0 0.9 Sec-independent periplasmic protein translocation protein TatC (NCBI ptt file) compare
SO0937 +1.0 1.3 hypothetical protein (NCBI ptt file) compare
SO2774 fabF-1 +1.0 2.0 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file) compare
SOA0094 +0.9 2.6 hypothetical protein (NCBI ptt file) compare
SO2146 +0.9 1.9 hypothetical protein (NCBI ptt file) compare
SO2973 +0.9 3.1 prophage LambdaSo, lysozyme, putative (NCBI ptt file) compare
SO2943 +0.9 1.6 conserved domain protein (NCBI ptt file) compare
SO2324 cheW-2 +0.9 1.1 purine-binding chemotaxis protein CheW (NCBI ptt file) compare
SO3150 +0.9 2.5 lipoprotein, putative (NCBI ptt file) compare
SO0552 +0.9 2.7 hypothetical protein (NCBI ptt file) compare
SO3250 flgB +0.9 2.0 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO3982 narP +0.9 3.0 DNA-binding nitrate/nitrite response regulator (NCBI ptt file) compare
SO2627 +0.9 0.6 conserved hypothetical protein (NCBI ptt file) compare
SO0551 +0.9 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO4670 elbB +0.9 1.4 enhancing lycopene biosynthesis protein (NCBI ptt file) compare
SO0273 +0.9 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2111 +0.9 1.4 hypothetical protein (NCBI ptt file) compare
SO1908 +0.9 1.8 hypothetical protein (NCBI ptt file) compare
SO3191 +0.9 3.5 chain length determinant protein (NCBI ptt file) compare
SO1675 +0.9 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0462 +0.9 1.0 hypothetical protein (NCBI ptt file) compare
SO3158 +0.9 2.0 polysaccharide synthesis-related protein (NCBI ptt file) compare
SO1703 +0.9 1.5 transcriptional regulator, TetR family (NCBI ptt file) compare
SO2603 +0.9 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO0430 +0.9 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2155 +0.9 1.5 glyoxalase family protein (NCBI ptt file) compare
SO4342 +0.9 1.5 hypothetical protein (NCBI ptt file) compare
SO0001 mioC +0.9 0.3 mioC protein (NCBI ptt file) compare
SO4683 +0.9 1.5 hypothetical protein (NCBI ptt file) compare
SO3819.1 +0.9 1.5 hypothetical ammonia permease (NCBI ptt file) compare
SO3350 pilU +0.9 4.0 twitching motility protein PilU (NCBI ptt file) compare
SO2640 +0.8 1.0 transcriptional regulator, MarR family (NCBI ptt file) compare
SO3199 +0.8 1.9 FlhB domain protein (NCBI ptt file) compare
SO3167 +0.8 1.1 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
SO1470 +0.8 2.4 hypothetical protein (NCBI ptt file) compare
SO1901 sugE +0.8 1.1 sugE protein (NCBI ptt file) compare
SO3593 +0.8 1.9 hypothetical protein (NCBI ptt file) compare
SO1697 +0.8 0.9 hypothetical protein (NCBI ptt file) compare
SO0921 +0.8 0.7 hypothetical protein (NCBI ptt file) compare
SO3142.3 +0.8 0.7 hypothetical Na+/H+ antiporte (NCBI ptt file) compare
SO1854 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
SO1808 pspB +0.8 1.2 phage shock protein B (NCBI ptt file) compare
SO0515 +0.8 2.5 hypothetical protein (NCBI ptt file) compare
SO3270 +0.8 1.5 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2268 hscA +0.8 1.0 chaperone protein HscA (NCBI ptt file) compare
SO1753 +0.8 2.5 hypothetical protein (NCBI ptt file) compare
SO3988 arcA +0.8 0.6 aerobic respiration control protein ArcA (NCBI ptt file) compare
SO3954 +0.8 2.3 ABC transporter, ATP-binding protein, putative (NCBI ptt file) compare
SO4685 +0.8 3.6 conserved hypothetical protein (NCBI ptt file) compare
SO0002 +0.8 2.4 proton/peptide symporter family protein (NCBI ptt file) compare
SO0568 +0.8 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3777 +0.8 1.8 hypothetical protein (NCBI ptt file) compare
SO3178 +0.8 5.7 hypothetical protein (NCBI ptt file) compare
SO0288 +0.8 3.8 damX domain protein (NCBI ptt file) compare
SO4013 +0.8 1.1 hypothetical protein (NCBI ptt file) compare
SO2979 +0.8 3.2 hypothetical protein (NCBI ptt file) compare
SO2604 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0808 +0.7 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0302 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
SO3850 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO2253 +0.7 1.0 acylphosphatase (NCBI ptt file) compare
SO2607 +0.7 2.1 spore maturation protein A-related protein (NCBI ptt file) compare
SO2617 udk +0.7 0.9 uridine kinase (NCBI ptt file) compare
SO3185 +0.7 4.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2241 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2290 +0.7 1.7 rhodanese domain protein (NCBI ptt file) compare
SO3975 +0.7 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3401 +0.7 2.0 conserved hypothetical protein TIGR01033 (NCBI ptt file) compare
SO3014 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
SOA0155 +0.7 3.0 conserved domain protein (NCBI ptt file) compare
SO2499 +0.7 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO4054 metF +0.7 2.7 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) compare
SO2609 +0.7 1.9 NOL1/NOP2/sun family protein (NCBI ptt file) compare
SO3184 +0.7 5.5 conserved hypothetical protein (NCBI ptt file) compare
SO0269 +0.7 1.6 thioredoxin, putative (NCBI ptt file) compare
SO2009 +0.7 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1841 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
SO2176 +0.7 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO2971 +0.7 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO0464 +0.7 1.2 MutT/nudix family protein (NCBI ptt file) compare
SOA0109 +0.7 4.8 hypothetical protein (NCBI ptt file) compare
SO0472.1 +0.7 1.7 hypothetical mitomycin resistance protein (NCBI ptt file) compare
SO1692 +0.7 2.2 membrane protein, putative (NCBI ptt file) compare
SO3252 cheV-3 +0.7 2.5 chemotaxis protein CheV (NCBI ptt file) compare
SO2533 +0.7 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO3176 +0.7 5.3 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO1683 +0.7 0.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) compare
SO0120 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
SO2840 +0.7 0.6 conserved hypothetical protein (NCBI ptt file) compare
SO2439.2 +0.7 1.5 hypothetical methyl-accepting chemotaxis protein (NCBI ptt file) compare
SO4651 +0.7 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO0879 +0.7 0.4 conserved hypothetical protein (NCBI ptt file) compare
SO2888 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
SO_1706 +0.6 1.3 no description compare
SO0530 +0.6 1.1 transporter, LysE family (NCBI ptt file) compare
SO_t083 tRNA-Arg-8 +0.6 1.1 tRNA-Arg (RefSeq) compare


Specific Phenotypes

For 2 genes in this experiment

For evt Sodium D,L-Lactate in Shewanella oneidensis MR-1

For evt Sodium D,L-Lactate across organisms