Experiment set11IT076 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Oxonitine 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.4 -4.2 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -4.4 -3.0 SirA-like protein compare
Psyr_4340 -3.6 -9.6 phosphomethylpyrimidine kinase, putative compare
Psyr_4686 -3.3 -5.9 8-amino-7-oxononanoate synthase compare
Psyr_4683 -3.2 -4.8 dethiobiotin synthase compare
Psyr_1613 -3.2 -5.2 septum site-determining protein MinC compare
Psyr_4203 -3.0 -2.9 SsrA-binding protein compare
Psyr_4740 -2.9 -6.2 thiazole-phosphate synthase compare
Psyr_0475 -2.8 -2.0 Protein of unknown function YGGT compare
Psyr_0849 -2.8 -9.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4687 -2.6 -7.3 biotin synthase compare
Psyr_1663 -2.6 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_3008 -2.4 -7.6 Undecaprenyl-diphosphatase compare
Psyr_4627 -2.4 -2.8 dimethyladenosine transferase compare
Psyr_4341 -2.3 -6.5 thiamine-phosphate diphosphorylase compare
Psyr_4091 -2.3 -5.4 8-oxo-dGTPase compare
Psyr_4822 -2.1 -4.3 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1556 -2.0 -3.1 hypothetical protein compare
Psyr_0454 -2.0 -5.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0917 -1.9 -11.1 ABC-2 compare
Psyr_0918 -1.8 -10.8 ABC transporter compare
Psyr_0575 -1.8 -3.9 protease FtsH subunit HflC compare
Psyr_0565 -1.8 -6.1 Protein of unknown function UPF0126 compare
Psyr_0255 -1.8 -2.9 glutamate-cysteine ligase compare
Psyr_4991 -1.7 -3.0 hypothetical protein compare
Psyr_4684 -1.7 -2.9 biotin synthesis protein BioC compare
Psyr_5132 -1.6 -3.1 Glucose-inhibited division protein A subfamily compare
Psyr_4580 -1.6 -2.8 anthranilate phosphoribosyltransferase compare
Psyr_1408 -1.6 -3.6 Holliday junction endonuclease RuvC compare
Psyr_1907 -1.5 -3.0 GTP cyclohydrolase I compare
Psyr_3886 -1.5 -2.1 methionyl-tRNA synthetase compare
Psyr_0529 -1.5 -5.4 Glycosyl transferase, group 1 compare
Psyr_3808 -1.5 -2.3 hypothetical protein compare
Psyr_3867 -1.4 -1.9 hypothetical protein compare
Psyr_2769 -1.4 -3.3 conserved hypothetical protein compare
Psyr_4884 -1.4 -4.4 Rhodanese-like protein compare
Psyr_1930 -1.4 -2.7 hypothetical protein compare
Psyr_1935 -1.4 -4.5 Protein of unknown function DUF796 compare
Psyr_0574 -1.4 -4.8 protease FtsH subunit HflK compare
Psyr_0493 -1.4 -3.6 CheW-like protein compare
Psyr_2894 -1.4 -2.3 conserved hypothetical protein compare
Psyr_4254 -1.4 -2.8 conserved hypothetical protein compare
Psyr_1885 -1.4 -2.1 hypothetical protein compare
Psyr_2071 -1.4 -1.4 outer membrane lipoprotein OprI compare
Psyr_5133 -1.3 -3.5 tRNA modification GTPase trmE compare
Psyr_3446 -1.2 -2.0 Surface presentation of antigens (SPOA) protein compare
Psyr_3581 -1.2 -5.0 ribosomal large subunit pseudouridine synthase B compare
Psyr_1667 -1.2 -5.0 Colicin V production protein compare
Psyr_3947 -1.1 -2.6 Methyltransferase, putative compare
Psyr_1460 -1.1 -4.2 hypothetical protein compare
Psyr_1505 -1.1 -2.5 Protein of unknown function DUF156 compare
Psyr_1094 -1.1 -2.8 cold-shock DNA-binding protein family compare
Psyr_4093 -1.1 -3.8 glutamate N-acetyltransferase compare
Psyr_1410 -1.1 -3.2 Holliday junction DNA helicase RuvB compare
Psyr_0487 -1.1 -2.2 glutathione synthase compare
Psyr_2184 -1.1 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_0383 -1.1 -1.5 Twin-arginine translocation protein TatB compare
Psyr_1227 -1.1 -2.6 Queuosine biosynthesis protein compare
Psyr_3202 -1.1 -1.7 NADH dehydrogenase subunit G compare
Psyr_0034 -1.1 -1.0 tryptophan synthase, beta chain compare
Psyr_2285 -1.0 -2.0 Twin-arginine translocation pathway signal compare
Psyr_2593 -1.0 -2.8 ABC transporter compare
Psyr_3213 -1.0 -2.4 Propeptide, PepSY amd peptidase M4 compare
Psyr_4622 -1.0 -4.2 Nucleotidyl transferase compare
Psyr_0724 -1.0 -1.9 conserved hypothetical protein compare
Psyr_4089 -1.0 -4.1 PAS compare
Psyr_3954 -1.0 -4.2 GTP-binding protein LepA compare
Psyr_3807 -1.0 -4.1 hypothetical protein compare
Psyr_0215 -1.0 -6.1 Exodeoxyribonuclease III xth compare
Psyr_2612 -1.0 -2.3 syrP protein, putative compare
Psyr_3090 -1.0 -2.4 hypothetical protein compare
Psyr_2095 -1.0 -3.9 Conserved TM helix compare
Psyr_1747 -1.0 -3.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2980 -1.0 -2.6 UDP-glucose pyrophosphorylase compare
Psyr_0179 -1.0 -1.8 Protein of unknown function DUF1289 compare
Psyr_1418 -1.0 -2.5 Radical SAM compare
Psyr_2854 -1.0 -2.8 conserved hypothetical protein compare
Psyr_1748 -1.0 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0282 -0.9 -3.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3290 -0.9 -2.7 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_3806 -0.9 -2.8 hypothetical protein compare
Psyr_1193 -0.9 -1.7 type III helper protein HrpZ1 compare
Psyr_4490 -0.9 -1.8 transcriptional regulator, DeoR family compare
Psyr_4754 -0.9 -1.9 16S rRNA m(2)G-966 methyltransferase compare
Psyr_2641 -0.9 -2.2 hypothetical protein compare
Psyr_0826 -0.9 -4.5 glucose-6-phosphate isomerase compare
Psyr_3293 -0.9 -2.2 UspA compare
Psyr_3840 -0.9 -2.2 conserved hypothetical protein compare
Psyr_1379 -0.9 -2.2 Regulatory protein RecX compare
Psyr_3589 -0.9 -2.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1751 -0.8 -2.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4138 -0.8 -3.0 Toluene tolerance compare
Psyr_3419 -0.8 -2.9 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_2562 -0.8 -1.4 hypothetical protein compare
Psyr_4335 -0.8 -1.4 transcriptional regulator, AsnC family compare
Psyr_2899 -0.8 -3.4 conserved hypothetical protein compare
Psyr_2664 -0.8 -3.6 hypothetical protein compare
Psyr_1688 -0.8 -1.7 Protein of unknown function DUF1315 compare
Psyr_2642 -0.8 -2.6 hypothetical protein compare
Psyr_1903 -0.8 -2.3 conserved hypothetical protein compare
Psyr_2348 -0.8 -1.9 hypothetical protein compare
Psyr_0579 -0.8 -5.6 RNAse R compare
Psyr_0268 -0.8 -1.8 DSBA oxidoreductase compare
Psyr_2143 -0.8 -1.5 delta1-piperideine 2-carboxylate reductase compare
Psyr_4118 -0.8 -4.0 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0528 -0.8 -2.0 Carbamoyltransferase compare
Psyr_1555 -0.8 -2.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_3107 -0.8 -2.0 conserved hypothetical protein compare
Psyr_0393 -0.8 -2.6 Protein of unknown function DUF971 compare
Psyr_0099 -0.8 -1.6 Conserved hypothetical protein compare
Psyr_3287 -0.8 -1.4 DNA topoisomerase I compare
Psyr_4460 -0.8 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_4362 -0.8 -1.3 Rare lipoprotein A compare
Psyr_2312 -0.8 -1.2 Protein of unknown function DUF24 compare
Psyr_2221 -0.8 -1.7 sarcosine oxidase, gamma subunit compare
Psyr_0919 -0.8 -5.2 Chromosome segregation ATPase-like protein compare
Psyr_0406 -0.7 -3.0 Pilus assembly protein, PilQ compare
Psyr_1373 -0.7 -1.5 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3618 -0.7 -1.4 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_1801 -0.7 -2.4 1-aminocyclopropane-1-carboxylate deaminase compare
Psyr_4598 -0.7 -2.0 lipoprotein, putative compare
Psyr_3616 -0.7 -4.4 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_1553 -0.7 -3.1 hypothetical protein compare
Psyr_0014 -0.7 -2.1 lipid A biosynthesis acyltransferase compare
Psyr_4581 -0.7 -1.6 anthranilate synthase, component II compare
Psyr_4417 -0.7 -0.9 Ferredoxin--nitrite reductase compare
Psyr_0464 -0.7 -1.5 hypothetical protein compare
Psyr_3135 -0.7 -1.5 transcriptional regulator, GntR family compare
Psyr_4519 -0.7 -3.4 General substrate transporter:Major facilitator superfamily compare
Psyr_1791 -0.7 -1.8 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_5129 -0.7 -2.7 chromosome segregation DNA-binding protein compare
Psyr_2423 -0.7 -2.2 hypothetical protein compare
Psyr_3644 -0.7 -2.3 prephenate dehydrogenase compare
Psyr_2346 -0.7 -2.3 conserved hypothetical protein compare
Psyr_4512 -0.7 -3.0 putative phage-related protein compare
Psyr_4939 -0.7 -2.0 conserved hypothetical protein compare
Psyr_2771 -0.7 -3.1 conserved domain protein compare
Psyr_2848 -0.7 -1.6 hypothetical protein compare
Psyr_4989 -0.7 -2.1 hypothetical protein compare
Psyr_0259 -0.7 -1.3 Osmolarity sensor protein envZ compare
Psyr_2227 -0.7 -1.6 conserved hypothetical protein compare
Psyr_1843 -0.7 -1.6 Protein of unknown function DUF1311 compare
Psyr_4566 -0.7 -4.4 Peptidase M23B compare
Psyr_3779 -0.7 -2.0 GCN5-related N-acetyltransferase compare
Psyr_1372 -0.7 -2.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3034 -0.7 -2.0 conserved hypothetical protein compare
Psyr_2065 -0.7 -3.0 transcription elongation factor GreB compare
Psyr_2375 -0.7 -2.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1378 -0.7 -1.3 RecA protein compare
Psyr_2345 -0.7 -3.0 ea59 protein compare
Psyr_3174 -0.7 -2.3 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_5072 -0.7 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4112 -0.6 -4.2 Protein of unknown function UPF0011 compare
Psyr_4609 -0.6 -4.7 anthranilate synthase, component I compare
Psyr_3164 -0.6 -3.9 Protein of unknown function UPF0005 compare
Psyr_3439 -0.6 -2.8 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_4979 -0.6 -3.2 hypothetical protein compare
Psyr_3665 -0.6 -1.6 conserved hypothetical protein compare
Psyr_2797 -0.6 -2.5 hypothetical protein compare
Psyr_0270 -0.6 -2.5 DNA polymerase I compare
Psyr_1931 -0.6 -2.6 hypothetical protein compare
Psyr_1198 -0.6 -1.2 type III secretion protein HrpF compare
Psyr_1588 -0.6 -1.9 Putative exonuclease, RdgC compare
Psyr_0281 -0.6 -1.5 ABC transporter compare
Psyr_1097 -0.6 -1.6 glycine cleavage system H protein compare
Psyr_3946 -0.6 -2.5 Proteobacterial methyltransferase compare
Psyr_4051 -0.6 -1.5 transcriptional regulator, ArsR family compare
Psyr_4350 -0.6 -1.9 Protein of unknown function DUF218 compare
Psyr_0490 -0.6 -3.0 CheW-like protein compare
Psyr_4593 -0.6 -1.6 sigma factor domain protein compare
Psyr_5130 -0.6 -3.5 chromosome segregation ATPase compare
Psyr_3638 -0.6 -2.1 UDP-glucose 4-epimerase, putative compare
Psyr_1389 -0.6 -1.9 Protein of unknown function DUF1456 compare
Psyr_1250 -0.6 -2.1 conserved hypothetical protein compare
Psyr_3088 -0.6 -2.5 Glycosyl transferase, group 1 compare
Psyr_1419 -0.6 -1.4 preQ(0) biosynthesis protein QueC compare
Psyr_0928 -0.6 -3.8 hypothetical protein compare
Psyr_4786 -0.6 -1.4 hypothetical protein compare
Psyr_0920 -0.6 -5.1 Glycosyl transferase, group 1 compare
Psyr_3152 -0.6 -0.5 hypothetical protein compare
Psyr_3121 -0.6 -1.6 Protein of unknown function DUF1345 compare
Psyr_0664 -0.6 -2.5 ABC transporter compare
Psyr_1404 -0.6 -3.3 Ferritin and Dps compare
Psyr_2842 -0.6 -3.0 hypothetical protein compare
Psyr_3001 -0.6 -2.4 Glycosyl transferase, family 2 compare
Psyr_0835 -0.6 -2.1 transcriptional regulator, TraR/DksA family compare
Psyr_0184 -0.6 -1.2 Protein of unknown function DUF484 compare
Psyr_4194 -0.6 -1.9 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2540 -0.6 -1.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2186 -0.6 -2.5 Senescence marker protein-30 (SMP-30) compare
Psyr_2104 -0.6 -3.1 Response regulator receiver:ANTAR compare
Psyr_2062 -0.6 -1.5 DoxD-like family protein compare
Psyr_0394 -0.6 -2.3 Heat shock protein HslU compare
Psyr_3089 -0.6 -4.4 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_3709 -0.6 -1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2321 -0.5 -3.0 YD repeat protein compare
Psyr_0262 -0.5 -2.6 Transport-associated protein compare
Psyr_4278 -0.5 -1.5 regulatory protein, LuxR compare
Psyr_1563 -0.5 -2.1 Ribonuclease D compare
Psyr_4294 -0.5 -1.5 Histone deacetylase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Oxonitine across organisms