Experiment set11IT073 for Paraburkholderia graminis OAS925

Compare to:

Growth in presence of pinene

200 most important genes:

  gene name fitness t score description  
ABIE53_001696 -5.3 -3.3 ABC-type Fe3+-siderophore transport system permease subunit compare
ABIE53_002546 -4.7 -3.0 cell wall-associated NlpC family hydrolase compare
ABIE53_001575 -4.5 -3.0 acetolactate synthase-1/3 small subunit compare
ABIE53_001694 -4.5 -5.3 iron complex outermembrane receptor protein compare
ABIE53_000403 -4.4 -3.0 rod shape-determining protein MreD compare
ABIE53_000262 -4.2 -2.7 chromosome partitioning protein compare
ABIE53_003407 -4.0 -5.4 outer membrane protein TolC compare
ABIE53_001140 -4.0 -2.8 dTDP-4-dehydrorhamnose reductase compare
ABIE53_003160 -3.9 -12.7 hypothetical protein compare
ABIE53_001772 -3.9 -1.1 succinylglutamic semialdehyde dehydrogenase compare
ABIE53_002077 -3.8 -2.4 phosphoserine phosphatase compare
ABIE53_003749 -3.7 -3.6 diaminopimelate decarboxylase compare
ABIE53_004151 -3.7 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
ABIE53_003186 -3.5 -9.6 disulfide bond formation protein DsbB compare
ABIE53_000598 -3.5 -5.8 thiol:disulfide interchange protein DsbA compare
ABIE53_003162 -3.2 -5.2 OOP family OmpA-OmpF porin compare
ABIE53_001686 -3.2 -7.2 putative ATP-binding cassette transporter compare
ABIE53_002528 -3.1 -3.0 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_001227 -3.1 -2.2 uncharacterized protein (DUF934 family) compare
ABIE53_004922 -3.1 -2.3 LysR family pca operon transcriptional activator compare
ABIE53_000830 -3.1 -3.8 preprotein translocase subunit YajC compare
ABIE53_002102 -2.9 -7.8 hypothetical protein compare
ABIE53_001644 -2.9 -6.9 aromatic-amino-acid transaminase compare
ABIE53_001771 -2.9 -3.4 arginine N-succinyltransferase compare
ABIE53_006516 -2.9 -2.8 cytochrome d ubiquinol oxidase subunit I compare
ABIE53_001598 -2.9 -1.2 NADH-quinone oxidoreductase subunit I compare
ABIE53_003815 -2.9 -2.8 tRNA-Arg compare
ABIE53_001853 -2.9 -1.1 hypothetical protein compare
ABIE53_003525 -2.9 -14.6 LPS-assembly lipoprotein compare
ABIE53_002794 -2.8 -5.3 PAS domain S-box-containing protein compare
ABIE53_001232 -2.8 -1.6 sirohydrochlorin cobaltochelatase compare
ABIE53_000798 -2.8 -5.0 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_000885 -2.7 -8.2 biopolymer transport protein TolQ compare
ABIE53_000201 -2.7 -1.3 hypothetical protein compare
ABIE53_001554 -2.7 -2.1 K+-transporting ATPase ATPase B chain compare
ABIE53_002739 -2.6 -5.1 outer membrane protein assembly factor BamB compare
ABIE53_003146 -2.6 -5.2 ADP-L-glycero-D-manno-heptose 6-epimerase compare
ABIE53_003311 -2.5 -9.0 hypothetical protein compare
ABIE53_005978 -2.5 -2.7 sporulation protein YlmC with PRC-barrel domain compare
ABIE53_003164 -2.5 -5.0 2-phosphoglycolate phosphatase compare
ABIE53_000423 -2.5 -3.5 DnaK suppressor protein compare
ABIE53_001421 -2.4 -2.2 cytochrome c553 compare
ABIE53_001559 -2.4 -2.0 hypothetical protein compare
ABIE53_003711 -2.3 -10.9 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_004811 -2.3 -8.1 tryptophan synthase alpha chain compare
ABIE53_002726 -2.3 -5.5 hypothetical protein compare
ABIE53_003660 -2.3 -2.8 hypothetical protein compare
ABIE53_000633 -2.3 -1.8 hypothetical protein compare
ABIE53_003994 -2.2 -1.8 DNA-binding protein HU-beta compare
ABIE53_005834 -2.2 -1.9 isoquinoline 1-oxidoreductase alpha subunit compare
ABIE53_005395 -2.2 -3.1 hypothetical protein compare
ABIE53_003943 -2.2 -2.2 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_003408 -2.2 -17.3 multidrug efflux pump compare
ABIE53_000799 -2.2 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase compare
ABIE53_006565 -2.2 -1.9 hypothetical protein compare
ABIE53_006196 -2.1 -3.7 lipoprotein NlpD compare
ABIE53_003428 -2.1 -4.2 phosphoglycerate kinase compare
ABIE53_005821 -2.1 -1.0 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_006508 -2.1 -4.2 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003406 -2.1 -12.1 NodT family efflux transporter outer membrane factor (OMF) lipoprotein compare
ABIE53_003512 -2.1 -3.2 DNA-binding transcriptional LysR family regulator compare
ABIE53_003158 -2.1 -3.9 phosphoserine aminotransferase compare
ABIE53_001769 -2.1 -2.2 succinylornithine aminotransferase compare
ABIE53_000666 -2.1 -4.4 preprotein translocase subunit SecB compare
ABIE53_002693 -2.1 -2.0 DNA-binding MarR family transcriptional regulator compare
ABIE53_003708 -2.0 -9.7 phospholipid transport system substrate-binding protein compare
ABIE53_003511 -2.0 -2.4 glutamate dehydrogenase (NAD(P)+) compare
ABIE53_002933 -2.0 -1.9 methyl-accepting chemotaxis protein compare
ABIE53_001188 -2.0 -7.4 PST family polysaccharide transporter compare
ABIE53_002306 -2.0 -1.4 hypothetical protein compare
ABIE53_003586 -2.0 -8.1 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_001695 -2.0 -2.7 ABC-type Fe3+-hydroxamate transport system substrate-binding protein compare
ABIE53_003409 -2.0 -13.9 membrane fusion protein (multidrug efflux system) compare
ABIE53_003517 -2.0 -6.0 phosphogluconate dehydratase compare
ABIE53_006030 -2.0 -1.9 hypothetical protein compare
ABIE53_003288 -2.0 -4.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA compare
ABIE53_000878 -2.0 -6.6 membrane-associated protein compare
ABIE53_003640 -1.9 -9.7 anthranilate synthase component 1 compare
ABIE53_001370 -1.9 -1.8 Raf kinase inhibitor-like YbhB/YbcL family protein compare
ABIE53_003752 -1.9 -0.9 cytochrome c-type biogenesis protein CcsB compare
ABIE53_001829 -1.9 -0.9 N utilization substance protein A compare
ABIE53_006490 -1.9 -1.4 DNA-binding transcriptional MerR regulator compare
ABIE53_003638 -1.9 -3.9 ribulose-phosphate 3-epimerase compare
ABIE53_002116 -1.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_000843 -1.8 -1.7 glycolate oxidase FAD binding subunit compare
ABIE53_002652 -1.8 -1.5 hypothetical protein compare
ABIE53_005529 -1.8 -2.9 putative transcriptional regulator YheO compare
ABIE53_003712 -1.8 -8.6 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_004913 -1.8 -8.3 putative porin compare
ABIE53_000805 -1.8 -2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_003531 -1.8 -1.4 Fur family ferric uptake transcriptional regulator compare
ABIE53_003015 -1.8 -12.6 ATP-binding cassette subfamily B protein compare
ABIE53_005807 -1.8 -2.1 hypothetical protein compare
ABIE53_002862 -1.8 -7.9 outer membrane protein assembly factor BamC compare
ABIE53_002404 -1.8 -2.7 hypothetical protein compare
ABIE53_003434 -1.7 -6.1 heptosyltransferase-2 compare
ABIE53_004304 -1.7 -6.0 putative membrane protein compare
ABIE53_005166 -1.7 -4.0 DNA-binding GntR family transcriptional regulator compare
ABIE53_004999 -1.7 -1.9 pilus assembly protein CpaE compare
ABIE53_005699 -1.7 -2.6 rhamnose transport system permease protein compare
ABIE53_000768 -1.7 -10.3 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_004034 -1.7 -2.4 hypothetical protein compare
ABIE53_003014 -1.7 -11.1 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_003444 -1.7 -4.5 succinyl-CoA synthetase alpha subunit compare
ABIE53_001187 -1.7 -4.0 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000832 -1.7 -4.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
ABIE53_005141 -1.7 -1.5 putative spermidine/putrescine transport system permease protein compare
ABIE53_002857 -1.6 -8.6 phosphomethylpyrimidine synthase compare
ABIE53_003710 -1.6 -7.7 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
ABIE53_003733 -1.6 -4.7 glutamate synthase domain-containing protein 3 compare
ABIE53_004858 -1.6 -2.7 farnesyl diphosphate synthase compare
ABIE53_004015 -1.6 -1.7 hypothetical protein compare
ABIE53_003445 -1.6 -3.8 succinyl-CoA synthetase beta subunit compare
ABIE53_006517 -1.6 -2.3 cytochrome d ubiquinol oxidase subunit II compare
ABIE53_001033 -1.6 -2.5 hypothetical protein compare
ABIE53_002437 -1.6 -3.0 tight adherence protein B compare
ABIE53_003494 -1.6 -2.9 Holliday junction DNA helicase RuvA compare
ABIE53_000883 -1.6 -1.0 colicin import membrane protein compare
ABIE53_000884 -1.6 -3.9 biopolymer transport protein TolR compare
ABIE53_002507 -1.5 -4.9 [protein-PII] uridylyltransferase compare
ABIE53_005250 -1.5 -2.1 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_001905 -1.5 -2.1 3-dehydroquinate dehydratase-2 compare
ABIE53_001041 -1.5 -1.7 hypothetical protein compare
ABIE53_001272 -1.5 -4.1 putative membrane protein compare
ABIE53_003878 -1.5 -3.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
ABIE53_003541 -1.5 -7.1 RNAse (barnase) inhibitor barstar compare
ABIE53_002104 -1.5 -5.4 phytoene synthase compare
ABIE53_000667 -1.5 -6.1 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_003304 -1.5 -1.4 dUTP pyrophosphatase compare
ABIE53_000573 -1.5 -5.2 hydroxymethylglutaryl-CoA lyase compare
ABIE53_003988 -1.5 -1.3 small multidrug resistance pump compare
ABIE53_006341 -1.4 -1.4 methylglutaconyl-CoA hydratase compare
ABIE53_001720 -1.4 -1.3 LysR family transcriptional regulator of abg operon compare
ABIE53_003536 -1.4 -5.9 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_001185 -1.4 -3.7 UDP-glucose 4-epimerase compare
ABIE53_005514 -1.4 -1.7 putative ATP-grasp superfamily ATP-dependent carboligase compare
ABIE53_001611 -1.4 -2.4 acyl dehydratase compare
ABIE53_005806 -1.4 -2.4 transcriptional regulator GlxA family with amidase domain compare
ABIE53_003125 -1.4 -1.6 large subunit ribosomal protein L19 compare
ABIE53_001963 -1.4 -0.7 hypothetical protein compare
ABIE53_003196 -1.4 -2.6 uncharacterized protein YbjQ (UPF0145 family) compare
ABIE53_005204 -1.4 -1.1 DNA-binding transcriptional LysR family regulator compare
ABIE53_001586 -1.4 -3.7 polyribonucleotide nucleotidyltransferase compare
ABIE53_002450 -1.4 -4.5 cell division protein ZapE compare
ABIE53_006119 -1.4 -3.2 two-component system sensor histidine kinase QseC compare
ABIE53_005380 -1.4 -1.3 DNA-binding transcriptional LysR family regulator compare
ABIE53_003399 -1.4 -4.1 zinc/manganese transport system ATP-binding protein compare
ABIE53_005841 -1.4 -1.4 2-furoyl-CoA dehydrogenase FAD binding subunit compare
ABIE53_003017 -1.4 -5.2 trehalose 6-phosphate phosphatase compare
ABIE53_003579 -1.4 -3.9 AmpD protein compare
ABIE53_002287 -1.4 -1.9 cytochrome b561 compare
ABIE53_001549 -1.3 -3.4 methylglyoxal synthase compare
ABIE53_004630 -1.3 -0.8 hypothetical protein compare
ABIE53_001538 -1.3 -5.0 ribonuclease G compare
ABIE53_006046 -1.3 -1.6 type III secretion protein L compare
ABIE53_006381 -1.3 -1.9 hypothetical protein compare
ABIE53_000072 -1.3 -6.7 flagellar protein FliS compare
ABIE53_001544 -1.3 -1.6 coproporphyrinogen III oxidase compare
ABIE53_001662 -1.3 -4.9 fumarate hydratase class I compare
ABIE53_001226 -1.3 -6.3 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_005972 -1.3 -2.1 ATP-dependent DNA ligase compare
ABIE53_000864 -1.3 -2.7 molecular chaperone DnaK compare
ABIE53_000427 -1.3 -1.4 uncharacterized protein YigA (DUF484 family) compare
ABIE53_001297 -1.3 -4.3 ribosomal protein S18 acetylase RimI-like enzyme compare
ABIE53_004227 -1.3 -3.5 signal transduction histidine kinase compare
ABIE53_003159 -1.3 -5.3 phosphoserine aminotransferase compare
ABIE53_003261 -1.3 -5.9 undecaprenyl-diphosphatase compare
ABIE53_003650 -1.3 -6.1 GTP-binding protein YchF compare
ABIE53_003230 -1.3 -3.7 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE53_005142 -1.3 -0.8 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_002580 -1.3 -2.5 transcriptional regulator GlxA family with amidase domain compare
ABIE53_000728 -1.3 -5.3 formyltetrahydrofolate deformylase compare
ABIE53_004784 -1.3 -2.1 6,7-dimethyl-8-ribityllumazine synthase compare
ABIE53_000795 -1.3 -4.9 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_001588 -1.3 -3.5 triosephosphate isomerase compare
ABIE53_004646 -1.2 -8.1 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
ABIE53_005351 -1.2 -1.8 nitrate reductase delta subunit compare
ABIE53_006264 -1.2 -2.3 putative spermidine/putrescine transport system permease protein compare
ABIE53_006235 -1.2 -1.6 hypothetical protein compare
ABIE53_000182 -1.2 -4.2 hypothetical protein compare
ABIE53_003571 -1.2 -0.9 thiol peroxidase compare
ABIE53_004616 -1.2 -2.5 DNA-binding IclR family transcriptional regulator compare
ABIE53_000544 -1.2 -2.0 methyl-accepting chemotaxis protein compare
ABIE53_000659 -1.2 -2.7 phosphocarrier protein HPr compare
ABIE53_005342 -1.2 -1.3 cytochrome o ubiquinol oxidase subunit 3 compare
ABIE53_006066 -1.2 -0.8 ABC-type branched-subunit amino acid transport system ATPase component compare
ABIE53_003495 -1.2 -2.3 Holliday junction DNA helicase RuvB compare
ABIE53_005243 -1.2 -0.7 hypothetical protein compare
ABIE53_002700 -1.2 -1.7 prophage regulatory protein compare
ABIE53_004834 -1.2 -0.9 DNA-binding transcriptional LysR family regulator compare
ABIE53_002601 -1.2 -1.1 chaperonin GroES compare
ABIE53_005815 -1.2 -1.4 rod shape-determining protein MreB compare
ABIE53_003846 -1.2 -1.8 tRNA-Asn compare
ABIE53_004626 -1.2 -1.4 hypothetical protein compare
ABIE53_003757 -1.2 -5.1 thiol:disulfide interchange protein DsbD compare
ABIE53_002729 -1.2 -5.0 KUP system potassium uptake protein compare
ABIE53_002535 -1.2 -1.9 superfamily II DNA/RNA helicase compare
ABIE53_002115 -1.1 -5.6 ATP-dependent Clp protease protease subunit compare
ABIE53_004194 -1.1 -1.2 hypothetical protein compare
ABIE53_000063 -1.1 -2.3 adenosylhomocysteinase compare


Specific Phenotypes

For 2 genes in this experiment

For stress pinene in Paraburkholderia graminis OAS925

For stress pinene across organisms