Experiment set11IT069 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS16410 -6.5 -10.9 glycogen synthase GlgA compare
PFLU_RS14550 -6.4 -4.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28645 -6.2 -13.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS16425 -6.0 -12.2 malto-oligosyltrehalose synthase compare
PFLU_RS27365 -5.9 -8.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS16435 -5.8 -12.5 glycogen debranching protein GlgX compare
PFLU_RS18755 -5.8 -5.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS25640 -5.8 -8.8 ketol-acid reductoisomerase compare
PFLU_RS01620 -5.7 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28535 -5.7 -15.1 dihydroxy-acid dehydratase compare
PFLU_RS20540 -5.6 -10.8 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -5.6 -10.7 anthranilate phosphoribosyltransferase compare
PFLU_RS25760 -5.6 -8.5 glucose-6-phosphate isomerase compare
PFLU_RS01605 -5.5 -9.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20580 -5.5 -12.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS00180 -5.5 -3.8 tryptophan synthase subunit beta compare
PFLU_RS29095 -5.5 -31.6 polyphosphate kinase 1 compare
PFLU_RS20575 -5.5 -8.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS23380 -5.5 -3.8 HAD-IB family hydrolase compare
PFLU_RS20565 -5.4 -15.6 3-isopropylmalate dehydrogenase compare
PFLU_RS01900 -5.4 -8.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS02590 -5.3 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS04470 -5.3 -11.3 histidinol dehydrogenase compare
PFLU_RS03970 -5.3 -11.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS10430 -5.3 -3.7 peptidase compare
PFLU_RS07640 -5.1 -12.0 universal stress protein compare
PFLU_RS28385 -5.1 -15.8 homoserine O-acetyltransferase compare
PFLU_RS00175 -5.1 -6.1 tryptophan synthase subunit alpha compare
PFLU_RS06310 -5.1 -7.0 sigma E protease regulator RseP compare
PFLU_RS04465 -5.1 -10.8 ATP phosphoribosyltransferase compare
PFLU_RS25645 -5.0 -3.5 acetolactate synthase small subunit compare
PFLU_RS23115 -5.0 -19.0 dicarboxylate/amino acid:cation symporter compare
PFLU_RS07245 -5.0 -9.0 DegQ family serine endoprotease compare
PFLU_RS04220 -5.0 -5.9 FadR family transcriptional regulator compare
PFLU_RS21495 -4.9 -3.4 TlpA family protein disulfide reductase compare
PFLU_RS04315 -4.9 -4.8 rod shape-determining protein MreD compare
PFLU_RS28390 -4.9 -13.1 methionine biosynthesis protein MetW compare
PFLU_RS16415 -4.9 -16.9 malto-oligosyltrehalose trehalohydrolase compare
PFLU_RS20510 -4.9 -17.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01625 -4.9 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02490 -4.9 -14.0 phosphoserine phosphatase SerB compare
PFLU_RS07230 -4.8 -9.7 RNA polymerase sigma factor RpoE compare
PFLU_RS31440 -4.7 -3.3 hypothetical protein compare
PFLU_RS28165 -4.7 -12.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS03880 -4.6 -17.9 ATP-dependent chaperone ClpB compare
PFLU_RS28695 -4.6 -10.3 phosphoglycerate dehydrogenase compare
PFLU_RS24785 -4.6 -12.1 outer membrane protein assembly factor BamB compare
PFLU_RS24025 -4.5 -14.6 quinolinate synthase NadA compare
PFLU_RS01960 -4.4 -4.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS02580 -4.4 -7.4 FtsH protease activity modulator HflK compare
PFLU_RS26205 -4.4 -15.9 YbdD/YjiX family protein compare
PFLU_RS04435 -4.4 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25715 -4.3 -7.3 RNA polymerase-binding protein DksA compare
PFLU_RS08700 -4.3 -11.8 MFS transporter compare
PFLU_RS24205 -4.3 -3.0 DNA binding protein compare
PFLU_RS13485 -4.3 -19.9 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS26735 -4.3 -8.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS02585 -4.2 -6.5 protease modulator HflC compare
PFLU_RS04430 -4.2 -8.1 ATP-binding cassette domain-containing protein compare
PFLU_RS08160 -4.1 -11.0 sugar transferase compare
PFLU_RS24765 -4.1 -20.8 2-isopropylmalate synthase compare
PFLU_RS04150 -4.1 -7.9 DUF1043 family protein compare
PFLU_RS01285 -4.1 -2.8 HAMP domain-containing protein compare
PFLU_RS24710 -4.1 -14.2 alpha,alpha-phosphotrehalase compare
PFLU_RS08505 -4.0 -6.2 protease HtpX compare
PFLU_RS25815 -4.0 -3.9 transcription termination/antitermination protein NusA compare
PFLU_RS03755 -4.0 -15.3 PDZ domain-containing protein compare
PFLU_RS25585 -3.9 -3.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS04445 -3.9 -8.4 ABC transporter substrate-binding protein compare
PFLU_RS15410 -3.9 -4.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS08155 -3.9 -6.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS07685 -3.9 -3.8 transcriptional repressor LexA compare
PFLU_RS30525 -3.8 -15.4 SDR family oxidoreductase compare
PFLU_RS08660 -3.8 -2.6 heme exporter protein CcmD compare
PFLU_RS00440 -3.8 -19.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04440 -3.8 -11.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS26210 -3.7 -21.0 carbon starvation protein A compare
PFLU_RS25755 -3.7 -4.4 pantoate--beta-alanine ligase compare
PFLU_RS22740 -3.7 -3.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS13475 -3.7 -18.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS22095 -3.7 -21.7 GTP diphosphokinase compare
PFLU_RS07785 -3.6 -13.8 VacJ family lipoprotein compare
PFLU_RS18940 -3.6 -13.7 acyl-CoA dehydrogenase compare
PFLU_RS09055 -3.6 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28325 -3.6 -8.3 energy transducer TonB compare
PFLU_RS01400 -3.5 -16.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22595 -3.5 -2.4 OmpA family protein compare
PFLU_RS28905 -3.5 -11.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS08650 -3.5 -2.4 heme exporter protein CcmB compare
PFLU_RS21260 -3.4 -9.2 DUF3509 domain-containing protein compare
PFLU_RS30520 -3.4 -10.3 ketoacyl-ACP synthase III compare
PFLU_RS08185 -3.4 -14.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS20515 -3.4 -4.6 amidophosphoribosyltransferase compare
PFLU_RS18505 -3.4 -13.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS02275 -3.4 -2.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS18395 -3.4 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS29215 -3.3 -14.3 response regulator transcription factor compare
PFLU_RS27475 -3.3 -8.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS18620 -3.3 -9.0 NADH-quinone oxidoreductase subunit B compare
PFLU_RS01765 -3.2 -11.5 histidine utilization repressor compare
PFLU_RS09980 -3.2 -19.3 peptidase S41 compare
PFLU_RS08655 -3.2 -3.1 heme ABC transporter permease compare
PFLU_RS18665 -3.2 -7.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS16420 -3.2 -13.2 4-alpha-glucanotransferase compare
PFLU_RS07665 -3.2 -3.1 type I DNA topoisomerase compare
PFLU_RS18635 -3.2 -6.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS08675 -3.2 -3.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS12915 -3.1 -4.9 methyltransferase domain-containing protein compare
PFLU_RS23125 -3.1 -18.3 HAMP domain-containing protein compare
PFLU_RS19165 -3.1 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04070 -3.1 -3.0 peptide chain release factor 3 compare
PFLU_RS30530 -3.1 -10.0 acetyltransferase compare
PFLU_RS12980 -3.1 -12.3 nitrite/sulfite reductase compare
PFLU_RS12580 -3.1 -10.5 MurR/RpiR family transcriptional regulator compare
PFLU_RS08670 -3.1 -4.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04165 -3.1 -8.8 cell division protein ZapE compare
PFLU_RS07645 -3.0 -4.6 hypothetical protein compare
PFLU_RS08665 -3.0 -2.9 cytochrome c maturation protein CcmE compare
PFLU_RS02565 -3.0 -7.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS18670 -2.9 -4.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS08410 -2.8 -9.3 HTH-type transcriptional regulator CysB compare
PFLU_RS23235 -2.8 -3.4 Arc family DNA-binding protein compare
PFLU_RS18640 -2.8 -7.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS04205 -2.8 -11.4 cytochrome c1 compare
PFLU_RS12975 -2.8 -6.3 DUF934 domain-containing protein compare
PFLU_RS29480 -2.7 -12.5 exodeoxyribonuclease III compare
PFLU_RS18625 -2.7 -11.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25595 -2.7 -4.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS27300 -2.7 -16.5 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS04200 -2.7 -14.4 cytochrome bc complex cytochrome b subunit compare
PFLU_RS23065 -2.7 -10.3 phosphate acyltransferase PlsX compare
PFLU_RS18675 -2.6 -6.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS06320 -2.6 -3.9 OmpH family outer membrane protein compare
PFLU_RS01645 -2.6 -12.0 S41 family peptidase compare
PFLU_RS18655 -2.6 -4.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS05655 -2.6 -4.3 DeoR/GlpR family transcriptional regulator compare
PFLU_RS08180 -2.5 -6.8 ketoacyl-ACP synthase III compare
PFLU_RS08165 -2.5 -2.6 acyl carrier protein compare
PFLU_RS19015 -2.5 -9.6 anti-sigma factor compare
PFLU_RS24555 -2.5 -4.7 thioredoxin fold domain-containing protein compare
PFLU_RS24805 -2.4 -5.6 helix-turn-helix domain-containing protein compare
PFLU_RS22645 -2.4 -13.1 EamA family transporter compare
PFLU_RS20290 -2.4 -2.5 integration host factor subunit alpha compare
PFLU_RS11325 -2.4 -7.2 helix-turn-helix domain-containing protein compare
PFLU_RS04195 -2.4 -5.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS01885 -2.3 -6.4 Sec-independent protein translocase subunit TatB compare
PFLU_RS06055 -2.3 -2.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS26635 -2.3 -7.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS01880 -2.3 -8.6 twin-arginine translocase subunit TatC compare
PFLU_RS23310 -2.3 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS00065 -2.3 -8.7 lysophospholipid acyltransferase compare
PFLU_RS18645 -2.2 -4.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS26535 -2.2 -7.4 thiamine phosphate synthase compare
PFLU_RS26545 -2.2 -9.6 sel1 repeat family protein compare
PFLU_RS24090 -2.2 -5.5 Holliday junction branch migration protein RuvA compare
PFLU_RS21425 -2.2 -3.6 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS03665 -2.2 -4.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS24085 -2.1 -6.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS00040 -2.1 -12.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS06815 -2.1 -10.6 TetR family transcriptional regulator compare
PFLU_RS04385 -2.1 -9.5 RNase adapter RapZ compare
PFLU_RS26770 -2.1 -10.5 DedA family protein compare
PFLU_RS22520 -2.1 -4.1 GntR family transcriptional regulator compare
PFLU_RS15680 -2.0 -14.1 TonB-dependent receptor compare
PFLU_RS18410 -2.0 -4.7 response regulator compare
PFLU_RS18615 -2.0 -3.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS07725 -2.0 -5.2 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS25360 -2.0 -7.9 glutamate 5-kinase compare
PFLU_RS15610 -2.0 -6.3 helix-turn-helix transcriptional regulator compare
PFLU_RS10765 -2.0 -8.4 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS02280 -1.9 -10.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS14810 -1.9 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS01965 -1.9 -2.8 ATP-dependent protease subunit HslV compare
PFLU_RS24590 -1.9 -4.1 cytochrome c assembly protein compare
PFLU_RS26530 -1.9 -11.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS21740 -1.8 -6.8 Hpt domain-containing protein compare
PFLU_RS08490 -1.8 -2.2 DEAD/DEAH box helicase compare
PFLU_RS11620 -1.8 -9.3 FadR family transcriptional regulator compare
PFLU_RS11475 -1.8 -1.8 histidine kinase compare
PFLU_RS00445 -1.7 -2.7 hypothetical protein compare
PFLU_RS29780 -1.7 -5.7 acyl-CoA thioesterase compare
PFLU_RS05880 -1.7 -5.7 CinA family protein compare
PFLU_RS02430 -1.7 -10.6 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS22380 -1.7 -5.9 sulfite exporter TauE/SafE family protein compare
PFLU_RS25750 -1.7 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS26640 -1.7 -10.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS28690 -1.6 -9.2 FAD-binding oxidoreductase compare
PFLU_RS00695 -1.6 -1.5 DUF2789 domain-containing protein compare
PFLU_RS07255 -1.6 -4.1 sulfurtransferase TusA family protein compare
PFLU_RS28420 -1.6 -6.1 thiazole synthase compare
PFLU_RS28650 -1.6 -5.2 RNA pyrophosphohydrolase compare
PFLU_RS17450 -1.6 -5.2 carboxynorspermidine decarboxylase compare
PFLU_RS13560 -1.6 -5.3 TSUP family transporter compare
PFLU_RS15725 -1.6 -7.4 siderophore-iron reductase FhuF compare
PFLU_RS08190 -1.6 -10.9 polysaccharide biosynthesis protein compare
PFLU_RS22375 -1.6 -7.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS17080 -1.6 -4.0 FadR family transcriptional regulator compare
PFLU_RS00410 -1.6 -8.4 cytochrome c4 compare
PFLU_RS11525 -1.5 -4.6 GntR family transcriptional regulator compare
PFLU_RS23100 -1.5 -3.7 ribonuclease E compare


Specific Phenotypes

For 16 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms