Experiment set11IT069 for Paraburkholderia graminis OAS925

Compare to:

shik 20mM

200 most important genes:

  gene name fitness t score description  
ABIE53_003158 -6.6 -3.6 phosphoserine aminotransferase compare
ABIE53_000423 -6.0 -4.2 DnaK suppressor protein compare
ABIE53_000667 -4.9 -7.6 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_004277 -4.8 -8.1 3-oxoadipate CoA-transferase alpha subunit compare
ABIE53_004921 -4.7 -3.2 protocatechuate 3,4-dioxygenase beta subunit compare
ABIE53_004075 -4.7 -4.5 shikimate dehydrogenase conserved
ABIE53_003536 -4.5 -4.4 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_003017 -4.5 -11.2 trehalose 6-phosphate phosphatase compare
ABIE53_004275 -4.5 -3.1 3-carboxy-cis,cis-muconate cycloisomerase compare
ABIE53_001227 -4.4 -3.0 uncharacterized protein (DUF934 family) compare
ABIE53_000061 -4.4 -4.3 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_004811 -4.4 -7.3 tryptophan synthase alpha chain compare
ABIE53_000414 -4.4 -14.1 homoserine O-acetyltransferase compare
ABIE53_000663 -4.3 -12.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_004803 -4.3 -3.0 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003159 -4.3 -6.6 phosphoserine aminotransferase compare
ABIE53_004630 -4.3 -1.7 hypothetical protein compare
ABIE53_004276 -4.3 -5.1 3-oxoadipate CoA-transferase beta subunit compare
ABIE53_002729 -4.3 -4.2 KUP system potassium uptake protein compare
ABIE53_003431 -4.3 -8.7 putative branched-subunit amino acid permease compare
ABIE53_000840 -4.3 -7.1 pyrroline-5-carboxylate reductase compare
ABIE53_003735 -4.3 -4.1 hypothetical protein compare
ABIE53_003157 -4.2 -7.6 chorismate mutase/prephenate dehydratase compare
ABIE53_005782 -4.2 -1.6 hypothetical protein compare
ABIE53_004817 -4.1 -8.4 O-succinylhomoserine sulfhydrylase compare
ABIE53_001644 -4.1 -6.8 aromatic-amino-acid transaminase compare
ABIE53_003428 -4.1 -2.8 phosphoglycerate kinase compare
ABIE53_003734 -4.1 -9.5 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_000768 -4.0 -13.2 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_001588 -4.0 -3.9 triosephosphate isomerase compare
ABIE53_003430 -4.0 -12.2 putative branched-subunit amino acid permease compare
ABIE53_004804 -4.0 -3.9 3-isopropylmalate dehydrogenase compare
ABIE53_004852 -4.0 -15.9 DNA polymerase-1 compare
ABIE53_002794 -3.9 -2.7 PAS domain S-box-containing protein compare
ABIE53_001228 -3.9 -5.7 phosphoadenosine phosphosulfate reductase compare
ABIE53_002077 -3.9 -2.7 phosphoserine phosphatase compare
ABIE53_001770 -3.9 -5.9 arginine N-succinyltransferase compare
ABIE53_004801 -3.9 -7.8 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_003429 -3.8 -6.9 branched-subunit amino acid transport protein compare
ABIE53_003162 -3.8 -3.7 OOP family OmpA-OmpF porin compare
ABIE53_003588 -3.8 -4.5 glutamate 5-kinase compare
ABIE53_002857 -3.8 -12.6 phosphomethylpyrimidine synthase compare
ABIE53_001230 -3.7 -9.7 sulfate adenylyltransferase subunit 1 compare
ABIE53_000838 -3.7 -10.0 starvation-inducible DNA-binding protein compare
ABIE53_000029 -3.7 -16.7 IclR family pca regulon transcriptional regulator compare
ABIE53_001229 -3.7 -7.0 sulfate adenylyltransferase subunit 2 compare
ABIE53_001226 -3.6 -7.0 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_000046 -3.6 -11.6 putative MarR family transcription regulator compare
ABIE53_000403 -3.4 -3.3 rod shape-determining protein MreD compare
ABIE53_000683 -3.4 -9.5 protoheme IX farnesyltransferase compare
ABIE53_004274 -3.4 -2.3 3-oxoadipate enol-lactonase compare
ABIE53_002762 -3.4 -4.0 enolase compare
ABIE53_003640 -3.3 -10.2 anthranilate synthase component 1 compare
ABIE53_000650 -3.3 -11.6 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003638 -3.3 -5.0 ribulose-phosphate 3-epimerase compare
ABIE53_005068 -3.3 -16.0 MHS family shikimate/dehydroshikimate transporter-like MFS transporter compare
ABIE53_002138 -3.3 -8.1 glucose-6-phosphate isomerase compare
ABIE53_000649 -3.3 -3.8 peroxiredoxin compare
ABIE53_003749 -3.3 -6.6 diaminopimelate decarboxylase compare
ABIE53_000678 -3.2 -8.5 cytochrome c oxidase subunit 3 compare
ABIE53_003531 -3.2 -2.2 Fur family ferric uptake transcriptional regulator compare
ABIE53_000682 -3.2 -11.1 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_004920 -3.2 -4.4 protocatechuate 3,4-dioxygenase alpha subunit compare
ABIE53_003733 -3.2 -4.0 glutamate synthase domain-containing protein 3 compare
ABIE53_003495 -3.1 -3.0 Holliday junction DNA helicase RuvB compare
ABIE53_001140 -3.1 -3.1 dTDP-4-dehydrorhamnose reductase compare
ABIE53_004077 -3.1 -12.1 4-hydroxyphenylpyruvate dioxygenase conserved
ABIE53_000674 -3.1 -8.8 cytochrome c oxidase subunit 1 compare
ABIE53_001420 -3.1 -5.1 cytochrome c553 compare
ABIE53_003426 -3.1 -2.1 fructose-bisphosphate aldolase class II compare
ABIE53_000830 -3.0 -3.7 preprotein translocase subunit YajC compare
ABIE53_002528 -3.0 -2.9 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_003231 -3.0 -2.0 DNA-directed RNA polymerase subunit omega compare
ABIE53_001994 -2.9 -11.0 LysR family cys regulon transcriptional activator compare
ABIE53_001232 -2.8 -1.9 sirohydrochlorin cobaltochelatase compare
ABIE53_005863 -2.8 -12.3 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_002004 -2.8 -8.5 anti-sigma factor RsiW compare
ABIE53_001853 -2.8 -1.5 hypothetical protein compare
ABIE53_003877 -2.8 -11.4 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_003565 -2.7 -4.8 thiol-disulfide isomerase/thioredoxin compare
ABIE53_002117 -2.7 -5.4 ATP-dependent Lon protease compare
ABIE53_000383 -2.7 -2.2 DNA invertase Pin-like site-specific DNA recombinase compare
ABIE53_003306 -2.6 -8.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003434 -2.6 -8.0 heptosyltransferase-2 compare
ABIE53_004922 -2.6 -2.9 LysR family pca operon transcriptional activator compare
ABIE53_003541 -2.6 -10.6 RNAse (barnase) inhibitor barstar compare
ABIE53_003298 -2.6 -6.4 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_003674 -2.6 -5.7 AcrR family transcriptional regulator compare
ABIE53_004810 -2.5 -11.0 site-specific DNA-methyltransferase (adenine-specific) compare
ABIE53_001421 -2.5 -2.8 cytochrome c553 compare
ABIE53_003752 -2.4 -1.4 cytochrome c-type biogenesis protein CcsB compare
ABIE53_000063 -2.4 -3.6 adenosylhomocysteinase compare
ABIE53_003757 -2.3 -6.9 thiol:disulfide interchange protein DsbD compare
ABIE53_002494 -2.3 -4.6 outer membrane protein compare
ABIE53_000289 -2.3 -6.0 hypothetical protein compare
ABIE53_002101 -2.3 -9.5 two-component system phosphate regulon response regulator OmpR compare
ABIE53_001225 -2.3 -6.2 LysR family cys regulon transcriptional activator compare
ABIE53_003494 -2.3 -3.5 Holliday junction DNA helicase RuvA compare
ABIE53_003305 -2.3 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_004076 -2.2 -4.0 3-dehydroquinate dehydratase-2 compare
ABIE53_003459 -2.2 -8.6 cytochrome c553 compare
ABIE53_004482 -2.2 -1.6 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_003460 -2.2 -8.1 mono/diheme cytochrome c family protein compare
ABIE53_000875 -2.2 -5.8 tRNA dimethylallyltransferase compare
ABIE53_001544 -2.1 -3.0 coproporphyrinogen III oxidase compare
ABIE53_002485 -2.1 -11.7 pyruvate,water dikinase compare
ABIE53_005020 -2.1 -10.7 AAHS family 4-hydroxybenzoate transporter-like MFS transporter compare
ABIE53_003878 -2.1 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
ABIE53_000718 -2.1 -14.3 RNA polymerase sigma-54 factor compare
ABIE53_003260 -2.1 -6.8 tRNA (guanine-N7-)-methyltransferase compare
ABIE53_005566 -2.1 -5.3 FMN reductase compare
ABIE53_000666 -2.0 -2.9 preprotein translocase subunit SecB compare
ABIE53_004866 -2.0 -13.3 RNA polymerase primary sigma factor compare
ABIE53_004923 -2.0 -7.6 4-hydroxyphenylpyruvate dioxygenase compare
ABIE53_006219 -1.9 -1.7 hypothetical protein compare
ABIE53_000833 -1.9 -4.9 ATP-dependent DNA helicase RecG compare
ABIE53_000885 -1.9 -6.6 biopolymer transport protein TolQ compare
ABIE53_003669 -1.9 -2.3 CspA family cold shock protein compare
ABIE53_003923 -1.9 -3.2 protein phosphatase compare
ABIE53_000843 -1.8 -2.3 glycolate oxidase FAD binding subunit compare
ABIE53_005380 -1.8 -2.0 DNA-binding transcriptional LysR family regulator compare
ABIE53_000006 -1.8 -3.4 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABIE53_005978 -1.8 -2.6 sporulation protein YlmC with PRC-barrel domain compare
ABIE53_000290 -1.8 -11.6 Kef-type K+ transport system membrane component KefB compare
ABIE53_001231 -1.8 -8.7 uroporphyrin-III C-methyltransferase compare
ABIE53_002424 -1.8 -7.5 anti-sigma factor RsiW compare
ABIE53_004496 -1.7 -5.3 DNA-binding IclR family transcriptional regulator compare
ABIE53_005984 -1.7 -3.9 nitrite reductase/ring-hydroxylating ferredoxin subunit compare
ABIE53_006508 -1.7 -4.2 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_002168 -1.7 -5.5 hypothetical protein compare
ABIE53_000858 -1.7 -9.3 heat-inducible transcriptional repressor compare
ABIE53_000153 -1.7 -10.4 O-antigen ligase compare
ABIE53_002739 -1.6 -4.2 outer membrane protein assembly factor BamB compare
ABIE53_005596 -1.6 -4.8 DNA-binding IclR family transcriptional regulator compare
ABIE53_000681 -1.6 -9.7 cytochrome oxidase Cu insertion factor (SCO1/SenC/PrrC family) compare
ABIE53_006559 -1.6 -1.2 monosaccharide-transporting ATPase compare
ABIE53_001575 -1.6 -2.4 acetolactate synthase-1/3 small subunit compare
ABIE53_002846 -1.6 -2.3 uncharacterized membrane protein YtjA (UPF0391 family) compare
ABIE53_006378 -1.6 -1.8 biopolymer transport protein ExbB compare
ABIE53_005177 -1.6 -4.6 acetyl-CoA acyltransferase compare
ABIE53_000870 -1.6 -6.1 poly(A) polymerase compare
ABIE53_002450 -1.6 -6.2 cell division protein ZapE compare
ABIE53_003574 -1.5 -4.5 hypothetical protein compare
ABIE53_001383 -1.5 -4.8 DNA (cytosine-5)-methyltransferase 1 compare
ABIE53_003361 -1.5 -5.4 integrase/recombinase XerD compare
ABIE53_005070 -1.5 -6.1 DNA-binding GntR family transcriptional regulator compare
ABIE53_003815 -1.5 -2.5 tRNA-Arg compare
ABIE53_000680 -1.5 -5.5 surfeit locus 1 family protein compare
ABIE53_001049 -1.5 -2.2 hypothetical protein compare
ABIE53_000282 -1.5 -6.9 two-component system OmpR family response regulator compare
ABIE53_005243 -1.5 -1.1 hypothetical protein compare
ABIE53_005390 -1.4 -1.6 hypothetical protein compare
ABIE53_006197 -1.4 -2.0 ABC-type Zn2+ transport system substrate-binding protein/surface adhesin compare
ABIE53_000007 -1.4 -8.0 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
ABIE53_000706 -1.4 -1.7 large subunit ribosomal protein L25 compare
ABIE53_001552 -1.4 -1.8 K+-transporting ATPase KdpF subunit compare
ABIE53_001846 -1.4 -3.6 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_006290 -1.4 -2.0 3-oxoadipate enol-lactonase compare
ABIE53_005183 -1.4 -2.0 hypothetical protein compare
ABIE53_000262 -1.4 -1.7 chromosome partitioning protein compare
ABIE53_001664 -1.4 -10.2 acetyl-CoA synthetase compare
ABIE53_000288 -1.4 -5.9 carboxylate-amine ligase compare
ABIE53_005752 -1.4 -4.3 DNA-binding PadR family transcriptional regulator compare
ABIE53_002335 -1.4 -7.6 LacI family kdg operon repressor compare
ABIE53_000045 -1.4 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_000659 -1.4 -3.0 phosphocarrier protein HPr compare
ABIE53_005570 -1.4 -1.5 hypothetical protein compare
ABIE53_004344 -1.4 -2.1 peptide/nickel transport system permease protein compare
ABIE53_003186 -1.4 -5.3 disulfide bond formation protein DsbB compare
ABIE53_000978 -1.3 -1.8 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_002032 -1.3 -4.7 Rrf2 family nitric oxide-sensitive transcriptional repressor compare
ABIE53_000003 -1.3 -10.4 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA compare
ABIE53_006565 -1.3 -2.1 hypothetical protein compare
ABIE53_000883 -1.3 -1.2 colicin import membrane protein compare
ABIE53_000640 -1.3 -3.8 DeoR family fructose operon transcriptional repressor compare
ABIE53_003287 -1.3 -6.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_002232 -1.3 -1.8 tellurite resistance protein compare
ABIE53_002880 -1.3 -6.4 XRE family aerobic/anaerobic benzoate catabolism transcriptional regulator compare
ABIE53_004658 -1.3 -1.5 hypothetical protein compare
ABIE53_006341 -1.3 -0.9 methylglutaconyl-CoA hydratase compare
ABIE53_000598 -1.3 -4.8 thiol:disulfide interchange protein DsbA compare
ABIE53_001273 -1.3 -7.0 glucokinase compare
ABIE53_003288 -1.3 -3.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA compare
ABIE53_005516 -1.3 -1.0 beta-RFAP synthase compare
ABIE53_004031 -1.3 -1.8 DNA-binding transcriptional LysR family regulator compare
ABIE53_001135 -1.3 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_000673 -1.2 -6.0 cytochrome c oxidase subunit 2 compare
ABIE53_004160 -1.2 -9.2 putative porin compare
ABIE53_003040 -1.2 -6.3 serine protease Do compare
ABIE53_001142 -1.2 -4.7 hypothetical protein compare
ABIE53_006533 -1.2 -1.3 octopine/nopaline transport system ATP-binding protein compare
ABIE53_000005 -1.2 -7.5 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC compare
ABIE53_006167 -1.2 -1.4 hyperosmotically inducible protein compare
ABIE53_001538 -1.2 -4.8 ribonuclease G compare
ABIE53_002507 -1.2 -4.2 [protein-PII] uridylyltransferase compare
ABIE53_001991 -1.2 -3.3 sulfate transport system permease protein compare
ABIE53_000556 -1.2 -2.5 GGDEF domain-containing protein compare
ABIE53_001465 -1.2 -1.9 uncharacterized protein YaiI (UPF0178 family) compare
ABIE53_006272 -1.2 -3.8 AcrR family transcriptional regulator compare
ABIE53_003146 -1.2 -3.8 ADP-L-glycero-D-manno-heptose 6-epimerase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Shikimic Acid in Paraburkholderia graminis OAS925

For carbon source Shikimic Acid across organisms