Experiment set11IT061 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -7.1 -4.9 response regulator compare
PFLU_RS20575 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06735 -6.1 -4.2 3-oxoadipyl-CoA thiolase compare
PFLU_RS29095 -6.1 -27.6 polyphosphate kinase 1 compare
PFLU_RS13475 -6.0 -10.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS10765 -5.9 -10.6 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS16435 -5.9 -10.6 glycogen debranching protein GlgX compare
PFLU_RS28645 -5.8 -14.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS16425 -5.8 -12.4 malto-oligosyltrehalose synthase compare
PFLU_RS16410 -5.8 -19.2 glycogen synthase GlgA compare
PFLU_RS13485 -5.7 -11.7 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS28535 -5.7 -12.8 dihydroxy-acid dehydratase compare
PFLU_RS20510 -5.6 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27365 -5.6 -8.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20290 -5.6 -3.4 integration host factor subunit alpha compare
PFLU_RS24785 -5.6 -3.9 outer membrane protein assembly factor BamB compare
PFLU_RS21260 -5.5 -7.6 DUF3509 domain-containing protein compare
PFLU_RS07640 -5.5 -8.4 universal stress protein compare
PFLU_RS25640 -5.4 -11.1 ketol-acid reductoisomerase compare
PFLU_RS16415 -5.4 -14.5 malto-oligosyltrehalose trehalohydrolase compare
PFLU_RS06765 -5.4 -7.4 4-carboxymuconolactone decarboxylase compare
PFLU_RS28420 -5.4 -10.4 thiazole synthase compare
PFLU_RS16420 -5.4 -12.5 4-alpha-glucanotransferase compare
PFLU_RS01900 -5.4 -6.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28390 -5.3 -11.4 methionine biosynthesis protein MetW compare
PFLU_RS28385 -5.3 -14.6 homoserine O-acetyltransferase compare
PFLU_RS25815 -5.3 -3.7 transcription termination/antitermination protein NusA compare
PFLU_RS27370 -5.3 -10.8 anthranilate phosphoribosyltransferase compare
PFLU_RS23380 -5.3 -3.7 HAD-IB family hydrolase compare
PFLU_RS04470 -5.2 -10.6 histidinol dehydrogenase compare
PFLU_RS02590 -5.2 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20580 -5.2 -13.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -5.2 -16.0 3-isopropylmalate dehydrogenase compare
PFLU_RS14550 -5.2 -9.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS20540 -5.2 -12.5 phosphoribosylanthranilate isomerase compare
PFLU_RS26535 -5.2 -8.6 thiamine phosphate synthase compare
PFLU_RS29480 -5.1 -7.8 exodeoxyribonuclease III compare
PFLU_RS25800 -5.1 -5.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS21300 -5.1 -6.1 cysteine hydrolase compare
PFLU_RS00180 -5.1 -5.0 tryptophan synthase subunit beta compare
PFLU_RS28695 -5.1 -9.1 phosphoglycerate dehydrogenase compare
PFLU_RS16080 -5.1 -11.8 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS12915 -5.1 -3.5 methyltransferase domain-containing protein compare
PFLU_RS01620 -5.1 -8.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS07245 -5.1 -8.5 DegQ family serine endoprotease compare
PFLU_RS26530 -5.0 -16.2 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS04465 -5.0 -10.7 ATP phosphoribosyltransferase compare
PFLU_RS31530 -5.0 -1.8 transposase compare
PFLU_RS01605 -5.0 -10.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS06430 -5.0 -15.3 RNA polymerase sigma factor RpoS compare
PFLU_RS02430 -4.9 -17.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS09980 -4.9 -18.9 peptidase S41 compare
PFLU_RS06730 -4.9 -14.2 CoA-transferase subunit beta compare
PFLU_RS24765 -4.9 -24.7 2-isopropylmalate synthase compare
PFLU_RS25760 -4.9 -13.4 glucose-6-phosphate isomerase compare
PFLU_RS25645 -4.9 -3.4 acetolactate synthase small subunit compare
PFLU_RS04220 -4.9 -5.8 FadR family transcriptional regulator compare
PFLU_RS03755 -4.9 -12.6 PDZ domain-containing protein compare
PFLU_RS00440 -4.8 -16.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27685 -4.8 -18.0 malate synthase G compare
PFLU_RS22095 -4.8 -18.7 GTP diphosphokinase compare
PFLU_RS21495 -4.8 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS28165 -4.8 -11.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS19015 -4.8 -8.7 anti-sigma factor compare
PFLU_RS00040 -4.8 -19.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS04445 -4.8 -3.3 ABC transporter substrate-binding protein compare
PFLU_RS00175 -4.8 -7.9 tryptophan synthase subunit alpha compare
PFLU_RS06310 -4.7 -7.9 sigma E protease regulator RseP compare
PFLU_RS10430 -4.7 -4.6 peptidase compare
PFLU_RS04195 -4.7 -3.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS04205 -4.7 -7.8 cytochrome c1 compare
PFLU_RS07230 -4.7 -9.9 RNA polymerase sigma factor RpoE compare
PFLU_RS02490 -4.6 -13.4 phosphoserine phosphatase SerB compare
PFLU_RS23920 -4.6 -4.2 septation protein A compare
PFLU_RS04430 -4.6 -3.2 ATP-binding cassette domain-containing protein compare
PFLU_RS03665 -4.6 -6.4 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS28415 -4.6 -9.8 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS25360 -4.6 -8.2 glutamate 5-kinase compare
PFLU_RS01645 -4.5 -12.8 S41 family peptidase compare
PFLU_RS25750 -4.5 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS06755 -4.5 -12.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS04200 -4.5 -10.4 cytochrome bc complex cytochrome b subunit compare
PFLU_RS04440 -4.5 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS04385 -4.5 -13.2 RNase adapter RapZ compare
PFLU_RS07690 -4.4 -10.3 helix-turn-helix transcriptional regulator compare
PFLU_RS04150 -4.4 -9.0 DUF1043 family protein compare
PFLU_RS25715 -4.4 -5.2 RNA polymerase-binding protein DksA compare
PFLU_RS29290 -4.4 -5.2 hypothetical protein compare
PFLU_RS22630 -4.4 -21.3 phosphoenolpyruvate synthase compare
PFLU_RS22380 -4.3 -5.9 sulfite exporter TauE/SafE family protein compare
PFLU_RS07785 -4.3 -7.8 VacJ family lipoprotein compare
PFLU_RS22370 -4.3 -8.3 cadmium-translocating P-type ATPase compare
PFLU_RS03970 -4.3 -13.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS07255 -4.3 -5.9 sulfurtransferase TusA family protein compare
PFLU_RS24590 -4.3 -5.0 cytochrome c assembly protein compare
PFLU_RS23125 -4.2 -19.9 HAMP domain-containing protein compare
PFLU_RS12025 -4.2 -6.6 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS22395 -4.2 -6.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS08155 -4.2 -5.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS24205 -4.2 -2.9 DNA binding protein compare
PFLU_RS25735 -4.2 -5.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS06725 -4.2 -12.5 CoA transferase subunit A compare
PFLU_RS01895 -4.1 -7.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22375 -4.1 -11.3 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS08505 -4.1 -4.9 protease HtpX compare
PFLU_RS22075 -4.1 -13.4 DUF3108 domain-containing protein compare
PFLU_RS26735 -4.1 -8.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS18395 -4.1 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS04435 -4.1 -6.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS26635 -4.0 -6.7 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS02280 -4.0 -17.7 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS24025 -4.0 -14.8 quinolinate synthase NadA compare
PFLU_RS03880 -4.0 -18.1 ATP-dependent chaperone ClpB compare
PFLU_RS28905 -4.0 -8.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS16070 -4.0 -10.6 feruloyl-CoA synthase compare
PFLU_RS18755 -4.0 -10.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS22835 -4.0 -12.2 amidotransferase compare
PFLU_RS18610 -3.9 -19.1 isocitrate lyase compare
PFLU_RS01965 -3.9 -3.8 ATP-dependent protease subunit HslV compare
PFLU_RS27465 -3.9 -5.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS01285 -3.9 -2.7 HAMP domain-containing protein compare
PFLU_RS01885 -3.8 -4.5 Sec-independent protein translocase subunit TatB compare
PFLU_RS08445 -3.8 -9.5 MarR family transcriptional regulator compare
PFLU_RS25225 -3.8 -9.8 disulfide bond formation protein B compare
PFLU_RS08125 -3.8 -4.7 integration host factor subunit beta compare
PFLU_RS01880 -3.8 -4.5 twin-arginine translocase subunit TatC compare
PFLU_RS04930 -3.8 -15.1 PhoH family protein compare
PFLU_RS25875 -3.7 -5.7 transcription elongation factor GreA compare
PFLU_RS07250 -3.7 -14.5 M48 family metallopeptidase compare
PFLU_RS06760 -3.7 -14.2 3-oxoadipate enol-lactonase compare
PFLU_RS02355 -3.7 -5.6 GNAT family N-acetyltransferase compare
PFLU_RS19170 -3.6 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS12980 -3.6 -11.8 nitrite/sulfite reductase compare
PFLU_RS22740 -3.6 -2.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS08660 -3.6 -2.5 heme exporter protein CcmD compare
PFLU_RS18505 -3.6 -13.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01960 -3.6 -4.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS13560 -3.6 -6.8 TSUP family transporter compare
PFLU_RS07645 -3.6 -2.5 hypothetical protein compare
PFLU_RS25755 -3.6 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS25730 -3.5 -18.2 PAS domain S-box protein compare
PFLU_RS15380 -3.5 -6.1 DUF1652 domain-containing protein compare
PFLU_RS01390 -3.5 -9.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS01625 -3.5 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS15065 -3.5 -6.4 IclR family transcriptional regulator compare
PFLU_RS02585 -3.5 -7.8 protease modulator HflC compare
PFLU_RS14730 -3.5 -7.8 response regulator compare
PFLU_RS03645 -3.5 -14.3 tetratricopeptide repeat protein compare
PFLU_RS20515 -3.5 -3.4 amidophosphoribosyltransferase compare
PFLU_RS25585 -3.5 -4.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS00065 -3.5 -4.8 lysophospholipid acyltransferase compare
PFLU_RS18530 -3.4 -6.6 DNA translocase FtsK compare
PFLU_RS23325 -3.4 -11.9 GlxA family transcriptional regulator compare
PFLU_RS08655 -3.4 -2.4 heme ABC transporter permease compare
PFLU_RS21530 -3.4 -15.3 transporter substrate-binding domain-containing protein compare
PFLU_RS08670 -3.4 -2.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24125 -3.3 -8.0 cold-shock protein compare
PFLU_RS02580 -3.3 -13.4 FtsH protease activity modulator HflK compare
PFLU_RS16075 -3.3 -5.7 aldehyde dehydrogenase compare
PFLU_RS23235 -3.3 -3.9 Arc family DNA-binding protein compare
PFLU_RS22595 -3.3 -2.3 OmpA family protein compare
PFLU_RS08650 -3.3 -2.3 heme exporter protein CcmB compare
PFLU_RS19165 -3.3 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02625 -3.2 -10.0 ribonuclease R compare
PFLU_RS02565 -3.2 -6.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS09005 -3.2 -17.5 molecular chaperone HtpG compare
PFLU_RS29400 -3.2 -3.3 DUF1127 domain-containing protein compare
PFLU_RS07725 -3.2 -6.1 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS26250 -3.2 -15.9 ferredoxin--NADP reductase compare
PFLU_RS28325 -3.1 -9.6 energy transducer TonB compare
PFLU_RS09055 -3.1 -4.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS05235 -3.1 -10.7 leucyl aminopeptidase compare
PFLU_RS20330 -3.1 -4.4 cold-shock protein compare
PFLU_RS13065 -3.1 -7.5 ser/threonine protein phosphatase compare
PFLU_RS08665 -3.0 -2.1 cytochrome c maturation protein CcmE compare
PFLU_RS08675 -3.0 -2.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS21425 -2.9 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS06745 -2.9 -5.5 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS22105 -2.9 -4.8 cysteine synthase CysM compare
PFLU_RS08410 -2.9 -6.7 HTH-type transcriptional regulator CysB compare
PFLU_RS06740 -2.8 -10.5 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS27300 -2.8 -17.7 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS24325 -2.8 -12.1 glucokinase compare
PFLU_RS28650 -2.8 -7.5 RNA pyrophosphohydrolase compare
PFLU_RS15410 -2.7 -4.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18670 -2.7 -3.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS29990 -2.7 -5.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS07435 -2.7 -11.3 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS27495 -2.7 -16.3 SpoVR family protein compare
PFLU_RS08490 -2.7 -1.9 DEAD/DEAH box helicase compare
PFLU_RS24710 -2.7 -8.4 alpha,alpha-phosphotrehalase compare
PFLU_RS26180 -2.7 -13.2 energy-dependent translational throttle protein EttA compare
PFLU_RS08575 -2.7 -2.8 hypothetical protein compare
PFLU_RS25215 -2.6 -12.2 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS27490 -2.6 -14.8 YeaH/YhbH family protein compare
PFLU_RS13480 -2.6 -11.3 maltose alpha-D-glucosyltransferase compare
PFLU_RS07235 -2.6 -4.7 sigma factor AlgU negative regulatory protein compare
PFLU_RS02350 -2.6 -9.1 carbamoyltransferase compare
PFLU_RS04070 -2.6 -3.9 peptide chain release factor 3 compare
PFLU_RS31440 -2.6 -2.1 hypothetical protein compare


Specific Phenotypes

For 51 genes in this experiment

For stress p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For stress p-Coumaric acid across organisms