Experiment set11IT054 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Karanjin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.4 -4.2 SirA-like protein compare
Psyr_0951 -3.7 -4.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1613 -3.6 -5.9 septum site-determining protein MinC compare
Psyr_4340 -3.5 -10.3 phosphomethylpyrimidine kinase, putative compare
Psyr_4203 -3.1 -3.0 SsrA-binding protein compare
Psyr_4740 -3.0 -7.7 thiazole-phosphate synthase compare
Psyr_4580 -3.0 -3.4 anthranilate phosphoribosyltransferase compare
Psyr_1556 -2.8 -3.6 hypothetical protein compare
Psyr_4686 -2.8 -7.2 8-amino-7-oxononanoate synthase compare
Psyr_0849 -2.7 -11.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4683 -2.7 -5.6 dethiobiotin synthase compare
Psyr_3008 -2.6 -7.0 Undecaprenyl-diphosphatase compare
Psyr_4991 -2.6 -3.8 hypothetical protein compare
Psyr_1663 -2.4 -4.1 phosphoribosylanthranilate isomerase compare
Psyr_4341 -2.4 -7.4 thiamine-phosphate diphosphorylase compare
Psyr_0487 -2.1 -3.4 glutathione synthase compare
Psyr_0454 -2.1 -6.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4687 -2.1 -7.8 biotin synthase compare
Psyr_0255 -2.0 -2.9 glutamate-cysteine ligase compare
Psyr_0575 -2.0 -4.3 protease FtsH subunit HflC compare
Psyr_0574 -1.9 -5.8 protease FtsH subunit HflK compare
Psyr_0565 -1.9 -7.9 Protein of unknown function UPF0126 compare
Psyr_4091 -1.8 -4.4 8-oxo-dGTPase compare
Psyr_5135 -1.8 -2.7 Protein of unknown function DUF37 compare
Psyr_0918 -1.8 -10.7 ABC transporter compare
Psyr_0917 -1.8 -9.9 ABC-2 compare
Psyr_3808 -1.7 -2.6 hypothetical protein compare
Psyr_4684 -1.7 -3.5 biotin synthesis protein BioC compare
Psyr_3889 -1.7 -3.9 conserved hypothetical protein compare
Psyr_5132 -1.7 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_4786 -1.7 -2.9 hypothetical protein compare
Psyr_4884 -1.7 -6.5 Rhodanese-like protein compare
Psyr_2855 -1.6 -4.0 methionine synthase (B12-independent) compare
Psyr_4581 -1.5 -3.5 anthranilate synthase, component II compare
Psyr_2285 -1.5 -2.6 Twin-arginine translocation pathway signal compare
Psyr_3287 -1.5 -2.6 DNA topoisomerase I compare
Psyr_2769 -1.4 -3.9 conserved hypothetical protein compare
Psyr_4627 -1.4 -2.5 dimethyladenosine transferase compare
Psyr_0475 -1.4 -2.5 Protein of unknown function YGGT compare
Psyr_1419 -1.3 -2.9 preQ(0) biosynthesis protein QueC compare
Psyr_4634 -1.3 -2.0 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2160 -1.3 -2.5 cold-shock DNA-binding protein family compare
Psyr_2808 -1.3 -2.2 hypothetical protein compare
Psyr_3954 -1.3 -5.2 GTP-binding protein LepA compare
Psyr_1930 -1.3 -3.1 hypothetical protein compare
Psyr_1555 -1.3 -3.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_1751 -1.2 -3.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0493 -1.2 -2.5 CheW-like protein compare
Psyr_3199 -1.2 -3.0 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1748 -1.2 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0531 -1.2 -2.2 LmbE-like protein compare
Psyr_1907 -1.2 -3.2 GTP cyclohydrolase I compare
Psyr_3581 -1.2 -5.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_1418 -1.2 -3.2 Radical SAM compare
Psyr_2347 -1.2 -2.3 hypothetical protein compare
Psyr_1373 -1.2 -2.8 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2462 -1.1 -3.4 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1460 -1.1 -3.7 hypothetical protein compare
Psyr_4089 -1.1 -4.1 PAS compare
Psyr_2030 -1.1 -2.2 Calcium-binding EF-hand compare
Psyr_1975 -1.1 -2.9 Integrase, catalytic region compare
Psyr_1350 -1.1 -2.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0529 -1.1 -4.1 Glycosyl transferase, group 1 compare
Psyr_2345 -1.1 -4.9 ea59 protein compare
Psyr_1408 -1.1 -1.7 Holliday junction endonuclease RuvC compare
Psyr_0826 -1.1 -4.9 glucose-6-phosphate isomerase compare
Psyr_3193 -1.0 -2.2 Transcription factor jumonji, jmjC compare
Psyr_5133 -1.0 -3.4 tRNA modification GTPase trmE compare
Psyr_1885 -1.0 -2.1 hypothetical protein compare
Psyr_2980 -1.0 -2.4 UDP-glucose pyrophosphorylase compare
Psyr_0444 -1.0 -1.5 Malonate decarboxylase delta subunit compare
Psyr_1667 -1.0 -3.8 Colicin V production protein compare
Psyr_1935 -1.0 -3.7 Protein of unknown function DUF796 compare
Psyr_3620 -1.0 -1.7 hypothetical protein compare
Psyr_2664 -1.0 -4.6 hypothetical protein compare
Psyr_4362 -1.0 -2.7 Rare lipoprotein A compare
Psyr_2854 -0.9 -3.1 conserved hypothetical protein compare
Psyr_0014 -0.9 -2.4 lipid A biosynthesis acyltransferase compare
Psyr_1094 -0.9 -2.9 cold-shock DNA-binding protein family compare
Psyr_0919 -0.9 -6.3 Chromosome segregation ATPase-like protein compare
Psyr_3090 -0.9 -2.1 hypothetical protein compare
Psyr_1688 -0.9 -1.9 Protein of unknown function DUF1315 compare
Psyr_3807 -0.9 -4.3 hypothetical protein compare
Psyr_0724 -0.9 -1.8 conserved hypothetical protein compare
Psyr_0282 -0.9 -3.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0215 -0.9 -6.1 Exodeoxyribonuclease III xth compare
Psyr_1404 -0.9 -5.3 Ferritin and Dps compare
Psyr_3164 -0.9 -5.7 Protein of unknown function UPF0005 compare
Psyr_1410 -0.9 -3.0 Holliday junction DNA helicase RuvB compare
Psyr_2251 -0.9 -1.7 Phosphonate metabolism PhnG compare
Psyr_3120 -0.9 -1.8 D-glucarate dehydratase compare
Psyr_4519 -0.9 -5.2 General substrate transporter:Major facilitator superfamily compare
Psyr_1250 -0.9 -2.4 conserved hypothetical protein compare
Psyr_2921 -0.9 -1.7 ADP-ribosylglycohydrolase compare
Psyr_2190 -0.9 -1.4 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_3121 -0.9 -2.2 Protein of unknown function DUF1345 compare
Psyr_2346 -0.9 -3.6 conserved hypothetical protein compare
Psyr_4093 -0.9 -3.5 glutamate N-acetyltransferase compare
Psyr_2807 -0.9 -1.5 NinB compare
Psyr_0259 -0.9 -1.8 Osmolarity sensor protein envZ compare
Psyr_0184 -0.9 -2.6 Protein of unknown function DUF484 compare
Psyr_4361 -0.8 -1.6 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_1371 -0.8 -4.4 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0081 -0.8 -1.8 ABC transporter compare
Psyr_2848 -0.8 -2.4 hypothetical protein compare
Psyr_1934 -0.8 -4.3 conserved hypothetical protein compare
Psyr_2200 -0.8 -1.2 UreE urease accessory, N-terminal compare
Psyr_2770 -0.8 -4.1 tail fiber domain protein compare
Psyr_4512 -0.8 -4.0 putative phage-related protein compare
Psyr_1588 -0.8 -2.6 Putative exonuclease, RdgC compare
Psyr_5065 -0.8 -4.9 ATP-dependent DNA helicase UvrD compare
Psyr_1357 -0.8 -2.2 RNase HII compare
Psyr_2642 -0.8 -2.6 hypothetical protein compare
Psyr_0838 -0.8 -1.7 Rieske [2Fe-2S] region compare
Psyr_2899 -0.8 -2.7 conserved hypothetical protein compare
Psyr_0034 -0.8 -0.9 tryptophan synthase, beta chain compare
Psyr_0025 -0.8 -2.6 shikimate dehydrogenase compare
Psyr_0383 -0.8 -1.5 Twin-arginine translocation protein TatB compare
Psyr_0579 -0.8 -5.8 RNAse R compare
Psyr_0535 -0.8 -2.1 toluene tolerance protein, putative compare
Psyr_3926 -0.8 -2.1 transcriptional regulator, PadR family compare
Psyr_0817 -0.8 -3.0 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_0920 -0.7 -6.5 Glycosyl transferase, group 1 compare
Psyr_3289 -0.7 -1.8 3-ketoacyl-CoA thiolase compare
Psyr_2738 -0.7 -2.3 regulatory protein, LysR compare
Psyr_2847 -0.7 -1.4 hypothetical protein compare
Psyr_0281 -0.7 -1.8 ABC transporter compare
Psyr_4822 -0.7 -1.5 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0528 -0.7 -2.0 Carbamoyltransferase compare
Psyr_0959 -0.7 -3.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_3947 -0.7 -2.0 Methyltransferase, putative compare
Psyr_4112 -0.7 -4.3 Protein of unknown function UPF0011 compare
Psyr_3088 -0.7 -3.0 Glycosyl transferase, group 1 compare
Psyr_4566 -0.7 -4.6 Peptidase M23B compare
Psyr_3208 -0.7 -1.5 NADH dehydrogenase subunit M compare
Psyr_2739 -0.7 -2.6 ThiJ/PfpI compare
Psyr_0373 -0.7 -1.6 CDS compare
Psyr_2990 -0.7 -1.9 conserved hypothetical protein compare
Psyr_1832 -0.7 -2.0 Exonuclease compare
Psyr_1447 -0.7 -1.3 conserved hypothetical protein compare
Psyr_1245 -0.7 -3.5 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_2112 -0.7 -1.2 Protein with unknown function DUF469 compare
Psyr_1329 -0.7 -2.8 conserved hypothetical protein compare
Psyr_4019 -0.7 -2.7 H-NS family protein MvaT compare
Psyr_3728 -0.7 -2.6 hypothetical protein compare
Psyr_3597 -0.7 -1.1 ABC transporter compare
Psyr_1227 -0.7 -2.0 Queuosine biosynthesis protein compare
Psyr_4155 -0.7 -1.2 Protein of unknown function DUF615 compare
Psyr_3665 -0.6 -1.9 conserved hypothetical protein compare
Psyr_2824 -0.6 -2.6 conserved hypothetical protein compare
Psyr_2310 -0.6 -2.3 lipoprotein, putative compare
Psyr_4754 -0.6 -1.6 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0170 -0.6 -2.0 heat shock protein Hsp15 compare
Psyr_4806 -0.6 -2.7 hypothetical protein compare
Psyr_0195 -0.6 -3.4 conserved hypothetical protein compare
Psyr_1379 -0.6 -1.5 Regulatory protein RecX compare
Psyr_0406 -0.6 -2.9 Pilus assembly protein, PilQ compare
Psyr_1212 -0.6 -2.0 type III secretion protein HrpO compare
Psyr_3805 -0.6 -1.5 hypothetical protein compare
Psyr_4118 -0.6 -3.2 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0923 -0.6 -2.7 hypothetical protein compare
Psyr_3610 -0.6 -2.0 GAF compare
Psyr_2601 -0.6 -3.5 regulatory protein, LuxR compare
Psyr_4804 -0.6 -1.4 conserved hypothetical protein compare
Psyr_4989 -0.6 -2.5 hypothetical protein compare
Psyr_0680 -0.6 -2.4 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_4138 -0.6 -2.0 Toluene tolerance compare
Psyr_1747 -0.6 -2.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2071 -0.6 -0.9 outer membrane lipoprotein OprI compare
Psyr_1749 -0.6 -3.4 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4813 -0.6 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_0927 -0.6 -1.5 hypothetical protein compare
Psyr_1037 -0.6 -2.1 ribosomal subunit interface protein, putative compare
Psyr_3949 -0.6 -2.7 DNA replication and repair protein RecO compare
Psyr_1779 -0.6 -1.3 hypothetical protein compare
Psyr_1718 -0.6 -1.5 von Willebrand factor, type A compare
Psyr_5130 -0.6 -3.9 chromosome segregation ATPase compare
Psyr_0511 -0.6 -1.6 conserved hypothetical protein compare
Psyr_2590 -0.6 -1.6 Periplasmic binding protein compare
Psyr_2880 -0.6 -2.9 conserved hypothetical protein compare
Psyr_0214 -0.6 -1.3 conserved hypothetical protein compare
Psyr_2933 -0.6 -2.1 transcriptional regulator, TetR family compare
Psyr_1670 -0.6 -1.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_2639 -0.6 -3.1 hypothetical protein compare
Psyr_3089 -0.6 -4.7 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_2887 -0.6 -0.5 Endoribonuclease L-PSP compare
Psyr_3806 -0.6 -2.2 hypothetical protein compare
Psyr_3837 -0.6 -1.6 conserved hypothetical protein compare
Psyr_1931 -0.6 -2.9 hypothetical protein compare
Psyr_3553 -0.6 -2.5 conserved hypothetical protein compare
Psyr_1515 -0.6 -2.6 hypothetical protein compare
Psyr_1097 -0.6 -1.1 glycine cleavage system H protein compare
Psyr_0394 -0.6 -2.5 Heat shock protein HslU compare
Psyr_3583 -0.6 -2.2 condensin subunit ScpB compare
Psyr_2327 -0.6 -1.4 GTP cyclohydrolase subunit MoaA compare
Psyr_0376 -0.6 -1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_0916 -0.6 -3.8 GDP-mannose 4,6-dehydratase compare
Psyr_2496 -0.6 -3.1 lipopolysaccharide core biosynthesis domain protein compare
Psyr_3636 -0.6 -3.8 Polysaccharide biosynthesis protein CapD compare
Psyr_0053 -0.6 -1.7 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Karanjin across organisms